protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 220 - 311 | 2.4e-15 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 348 - 446 | 3e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 373 - 476 | 1e-37 | RNase H-like domain found in reverse transcriptase |
| rve | PF00665 | 581 - 674 | 1.5e-16 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2589 |
| AarI | CACCTGC | 1 cut(s) | 683 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 812, 1008 |
| AatII | GACGTC | 1 cut(s) | 132 |
| Acc36I | ACCTGC | 4 cut(s) | 683, 947, 960, 2264 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 286 |
| AccII | CGCG | 1 cut(s) | 1920 |
| AciI | CCGC | 1 cut(s) | 299 |
| AclI | AACGTT | 1 cut(s) | 745 |
| AclWI | GGATC | 6 cut(s) | 209, 528, 1948, 2351, 2377, 2544 |
| AcoI | YGGCCR | 1 cut(s) | 2491 |
| AcsI | RAATTY | 3 cut(s) | 847, 1040, 1424 |
| AcuI | CTGAAG | 5 cut(s) | 1004, 1097, 1304, 1379, 1997 |
| AcyI | GRCGYC | 2 cut(s) | 129, 306 |
| AfaI | GTAC | 4 cut(s) | 401, 736, 936, 1364 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 148, 172, 228, 286, 1810, 2269 |
| AflIII | ACRYGT | 1 cut(s) | 1918 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1198, 1819 |
| AjnI | CCWGG | 4 cut(s) | 730, 1419, 1568, 2449 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 922, 954 |
| Alw21I | GWGCWC | 1 cut(s) | 1275 |
| Alw26I | GTCTC | 8 cut(s) | 468, 476, 568, 1387, 1517, 2008, 2050, 2175 |
| AlwI | GGATC | 6 cut(s) | 209, 528, 1948, 2351, 2377, 2544 |
| Ama87I | CYCGRG | 2 cut(s) | 1863, 2361 |
| AoxI | GGCC | 9 cut(s) | 162, 366, 1766, 1842, 2086, 2133, 2325, 2407, 2491 |
| ApaI | GGGCCC | 1 cut(s) | 2090 |
| ApeKI | GCWGC | 1 cut(s) | 1352 |
| ApoI | RAATTY | 3 cut(s) | 847, 1040, 1424 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 68, 100, 1019, 1051 |
| AspS9I | GGNCC | 9 cut(s) | 139, 163, 1122, 1766, 2086, 2087, 2133, 2407, 2466 |
| AsuC2I | CCSGG | 1 cut(s) | 1849 |
| AsuHPI | GGTGA | 9 cut(s) | 268, 301, 610, 619, 664, 931, 1363, 2009, 2497 |
| AvaI | CYCGRG | 2 cut(s) | 1863, 2361 |
| AvaII | GGWCC | 3 cut(s) | 139, 1122, 2466 |
| BaeGI | GKGCMC | 2 cut(s) | 585, 2090 |
| BalI | TGGCCA | 1 cut(s) | 2493 |
| BanII | GRGCYC | 2 cut(s) | 1275, 2090 |
| BbsI | GAAGAC | 1 cut(s) | 2084 |
| Bbv12I | GWGCWC | 1 cut(s) | 1275 |
| BbvI | GCAGC | 1 cut(s) | 1364 |
| BccI | CCATC | 8 cut(s) | 281, 296, 320, 1109, 1217, 1398, 1928, 2502 |
| BciT130I | CCWGG | 4 cut(s) | 732, 1421, 1570, 2451 |
| BciVI | GTATCC | 3 cut(s) | 284, 1401, 2061 |
| BclI | TGATCA | 4 cut(s) | 354, 1345, 1474, 1705 |
| BcnI | CCSGG | 1 cut(s) | 1849 |
| BcoDI | GTCTC | 8 cut(s) | 468, 476, 568, 1387, 1517, 2008, 2050, 2175 |
| BfmI | CTRYAG | 3 cut(s) | 697, 1260, 2137 |
| BfuAI | ACCTGC | 4 cut(s) | 683, 947, 960, 2264 |
| BfuI | GTATCC | 3 cut(s) | 284, 1401, 2061 |
| BisI | GCNGC | 1 cut(s) | 1353 |
| BlsI | GCNGC | 1 cut(s) | 1354 |
| BmcAI | AGTACT | 1 cut(s) | 1364 |
| Bme1390I | CCNGG | 5 cut(s) | 732, 1421, 1570, 1849, 2451 |
| Bme18I | GGWCC | 3 cut(s) | 139, 1122, 2466 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1198, 1819 |
| BmeT110I | CYCGRG | 2 cut(s) | 1863, 2361 |
| BmgT120I | GGNCC | 9 cut(s) | 139, 163, 1122, 1766, 2086, 2087, 2133, 2407, 2466 |
| BmiI | GGNNCC | 2 cut(s) | 1767, 2088 |
| BmrFI | CCNGG | 5 cut(s) | 732, 1421, 1570, 1849, 2451 |
| BmsI | GCATC | 3 cut(s) | 232, 1138, 2113 |
| BpiI | GAAGAC | 1 cut(s) | 2084 |
| BpmI | CTGGAG | 4 cut(s) | 552, 1098, 1403, 2276 |
| Bpu10I | CCTNAGC | 2 cut(s) | 122, 1839 |
| BpuEI | CTTGAG | 2 cut(s) | 395, 449 |
| BpuMI | CCSGG | 1 cut(s) | 1849 |
| Bsa29I | ATCGAT | 1 cut(s) | 2497 |
| BsaHI | GRCGYC | 2 cut(s) | 129, 306 |
| BsaI | GGTCTC | 4 cut(s) | 568, 1517, 2008, 2050 |
| BsaJI | CCNNGG | 3 cut(s) | 280, 1568, 2386 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1401, 1431, 1542, 1572 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 148, 172, 228, 286, 1810, 2269 |
| Bse1I | ACTGG | 5 cut(s) | 491, 569, 1124, 2210, 2293 |
| Bse3DI | GCAATG | 3 cut(s) | 252, 485, 730 |
| BseBI | CCWGG | 4 cut(s) | 732, 1421, 1570, 2451 |
| BseCI | ATCGAT | 1 cut(s) | 2497 |
| BseDI | CCNNGG | 3 cut(s) | 280, 1568, 2386 |
| BseGI | GGATG | 7 cut(s) | 181, 307, 312, 808, 1681, 1778, 2172 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 148, 172, 228, 286, 1810, 2269 |
| BseMI | GCAATG | 3 cut(s) | 252, 485, 730 |
| BseMII | CTCAG | 3 cut(s) | 27, 1256, 2036 |
| BseNI | ACTGG | 5 cut(s) | 491, 569, 1124, 2210, 2293 |
| BseRI | GAGGAG | 4 cut(s) | 185, 632, 1514, 2324 |
| BseSI | GKGCMC | 2 cut(s) | 585, 2090 |
| BseXI | GCAGC | 1 cut(s) | 1364 |
| Bsh1236I | CGCG | 1 cut(s) | 1920 |
| BshFI | GGCC | 9 cut(s) | 164, 368, 1768, 1844, 2088, 2135, 2327, 2409, 2493 |
| BshVI | ATCGAT | 1 cut(s) | 2497 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1275 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1863, 2361 |
| BsiSI | CCGG | 1 cut(s) | 1849 |
| BslFI | GGGAC | 5 cut(s) | 18, 116, 140, 700, 1712 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 148, 172, 228, 286, 1810, 2269 |
| BsmAI | GTCTC | 8 cut(s) | 468, 476, 568, 1387, 1517, 2008, 2050, 2175 |
| BsmFI | GGGAC | 5 cut(s) | 18, 116, 140, 700, 1712 |
| BsmI | GAATGC | 1 cut(s) | 1917 |
| BsnI | GGCC | 9 cut(s) | 164, 368, 1768, 1844, 2088, 2135, 2327, 2409, 2493 |
| Bso31I | GGTCTC | 4 cut(s) | 568, 1517, 2008, 2050 |
| BsoBI | CYCGRG | 2 cut(s) | 1863, 2361 |
| Bsp120I | GGGCCC | 1 cut(s) | 2086 |
| Bsp1286I | GDGCHC | 3 cut(s) | 585, 1275, 2090 |
| BspACI | CCGC | 1 cut(s) | 299 |
| BspANI | GGCC | 9 cut(s) | 164, 368, 1768, 1844, 2088, 2135, 2327, 2409, 2493 |
| BspCNI | CTCAG | 3 cut(s) | 28, 1255, 2035 |
| BspDI | ATCGAT | 1 cut(s) | 2497 |
| BspFNI | CGCG | 1 cut(s) | 1920 |
| BspHI | TCATGA | 1 cut(s) | 2371 |
| BspLI | GGNNCC | 2 cut(s) | 1767, 2088 |
| BspMI | ACCTGC | 4 cut(s) | 683, 947, 960, 2264 |
| BspPI | GGATC | 6 cut(s) | 209, 528, 1948, 2351, 2377, 2544 |
| BspTNI | GGTCTC | 4 cut(s) | 568, 1517, 2008, 2050 |
| BsrDI | GCAATG | 3 cut(s) | 252, 485, 730 |
| BsrI | ACTGG | 5 cut(s) | 491, 569, 1124, 2210, 2293 |
| BssECI | CCNNGG | 3 cut(s) | 280, 1568, 2386 |
| BssNI | GRCGYC | 2 cut(s) | 129, 306 |
| BssT1I | CCWWGG | 1 cut(s) | 280 |
| Bst2UI | CCWGG | 4 cut(s) | 732, 1421, 1570, 2451 |
| Bst4CI | ACNGT | 3 cut(s) | 364, 604, 2083 |
| Bst6I | CTCTTC | 2 cut(s) | 411, 1550 |
| BstACI | GRCGYC | 2 cut(s) | 129, 306 |
| BstC8I | GCNNGC | 1 cut(s) | 1922 |
| BstDEI | CTNAG | 6 cut(s) | 36, 122, 1242, 1839, 2022, 2438 |
| BstDSI | CCRYGG | 1 cut(s) | 2386 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2267 |
| BstF5I | GGATG | 7 cut(s) | 181, 307, 312, 808, 1681, 1778, 2172 |
| BstFNI | CGCG | 1 cut(s) | 1920 |
| BstMAI | GTCTC | 8 cut(s) | 468, 476, 568, 1387, 1517, 2008, 2050, 2175 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1169, 1921, 2132, 2237, 2287 |
| BstNI | CCWGG | 4 cut(s) | 732, 1421, 1570, 2451 |
| BstSCI | CCNGG | 5 cut(s) | 730, 1419, 1568, 1847, 2449 |
| BstSFI | CTRYAG | 3 cut(s) | 697, 1260, 2137 |
| BstSLI | GKGCMC | 2 cut(s) | 585, 2090 |
| BstUI | CGCG | 1 cut(s) | 1920 |
| BstV1I | GCAGC | 1 cut(s) | 1364 |
| BstV2I | GAAGAC | 1 cut(s) | 2084 |
| BstX2I | RGATCY | 2 cut(s) | 1940, 2343 |
| BstYI | RGATCY | 2 cut(s) | 1940, 2343 |
| Bsu15I | ATCGAT | 1 cut(s) | 2497 |
| BsuI | GTATCC | 3 cut(s) | 284, 1401, 2061 |
| BsuRI | GGCC | 9 cut(s) | 164, 368, 1768, 1844, 2088, 2135, 2327, 2409, 2493 |
| BsuTUI | ATCGAT | 1 cut(s) | 2497 |
| BtgI | CCRYGG | 1 cut(s) | 2386 |
| BtgZI | GCGATG | 1 cut(s) | 1947 |
| BtsCI | GGATG | 7 cut(s) | 181, 307, 312, 808, 1681, 1778, 2172 |
| BtsI | GCAGTG | 2 cut(s) | 294, 2247 |
| BtsIMutI | CAGTG | 4 cut(s) | 294, 498, 2217, 2247 |
| BveI | ACCTGC | 4 cut(s) | 683, 947, 960, 2264 |
| Cac8I | GCNNGC | 1 cut(s) | 1922 |
| CciI | TCATGA | 1 cut(s) | 2371 |
| Cfr13I | GGNCC | 9 cut(s) | 139, 163, 1122, 1766, 2086, 2087, 2133, 2407, 2466 |
| ClaI | ATCGAT | 1 cut(s) | 2497 |
| CseI | GACGC | 3 cut(s) | 295, 1237, 1247 |
| CsiI | ACCWGGT | 1 cut(s) | 730 |
| Csp6I | GTAC | 4 cut(s) | 400, 735, 935, 1363 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1812, 1847 |
| CviQI | GTAC | 4 cut(s) | 400, 735, 935, 1363 |
| DdeI | CTNAG | 6 cut(s) | 36, 122, 1242, 1839, 2022, 2438 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 812, 1008 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1198, 1819 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 812, 1008 |
| EaeI | YGGCCR | 1 cut(s) | 2491 |
| Eam1104I | CTCTTC | 2 cut(s) | 411, 1550 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1198, 1819 |
| EarI | CTCTTC | 2 cut(s) | 411, 1550 |
| Ecl136II | GAGCTC | 1 cut(s) | 1273 |
| Eco130I | CCWWGG | 1 cut(s) | 280 |
| Eco147I | AGGCCT | 1 cut(s) | 2327 |
| Eco24I | GRGCYC | 2 cut(s) | 1275, 2090 |
| Eco31I | GGTCTC | 4 cut(s) | 568, 1517, 2008, 2050 |
| Eco32I | GATATC | 1 cut(s) | 33 |
| Eco47I | GGWCC | 3 cut(s) | 139, 1122, 2466 |
| Eco53kI | GAGCTC | 1 cut(s) | 1273 |
| Eco57I | CTGAAG | 5 cut(s) | 1004, 1097, 1304, 1379, 1997 |
| Eco88I | CYCGRG | 2 cut(s) | 1863, 2361 |
| EcoICRI | GAGCTC | 1 cut(s) | 1273 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2267 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1766 |
| EcoRI | GAATTC | 2 cut(s) | 1040, 1424 |
| EcoRII | CCWGG | 4 cut(s) | 730, 1419, 1568, 2449 |
| EcoRV | GATATC | 1 cut(s) | 33 |
| EcoT14I | CCWWGG | 1 cut(s) | 280 |
| EcoT38I | GRGCYC | 2 cut(s) | 1275, 2090 |
| ErhI | CCWWGG | 1 cut(s) | 280 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 896, 928 |
| FaqI | GGGAC | 5 cut(s) | 18, 116, 140, 700, 1712 |
| FauNDI | CATATG | 1 cut(s) | 2598 |
| FbaI | TGATCA | 4 cut(s) | 354, 1345, 1474, 1705 |
| Fnu4HI | GCNGC | 1 cut(s) | 1353 |
| FokI | GGATG | 7 cut(s) | 188, 299, 314, 815, 1688, 1765, 2179 |
| FriOI | GRGCYC | 2 cut(s) | 1275, 2090 |
| Fsp4HI | GCNGC | 1 cut(s) | 1353 |
| GluI | GCNGC | 1 cut(s) | 1353 |
| GsuI | CTGGAG | 4 cut(s) | 552, 1098, 1403, 2276 |
| HaeIII | GGCC | 9 cut(s) | 164, 368, 1768, 1844, 2088, 2135, 2327, 2409, 2493 |
| HapII | CCGG | 1 cut(s) | 1849 |
| HgaI | GACGC | 3 cut(s) | 295, 1237, 1247 |
| Hin1I | GRCGYC | 2 cut(s) | 129, 306 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HindIII | AAGCTT | 3 cut(s) | 47, 1062, 2229 |
| HinfI | GANTC | 7 cut(s) | 83, 833, 1395, 1859, 2107, 2155, 2359 |
| HpaII | CCGG | 1 cut(s) | 1849 |
| HphI | GGTGA | 9 cut(s) | 268, 301, 610, 619, 664, 931, 1363, 2009, 2497 |
| Hpy166II | GTNNAC | 6 cut(s) | 16, 402, 1565, 1588, 1813, 2033 |
| Hpy188III | TCNNGA | 8 cut(s) | 524, 1115, 1613, 1863, 2054, 2062, 2372, 2433 |
| Hpy8I | GTNNAC | 6 cut(s) | 16, 402, 1565, 1588, 1813, 2033 |
| HpyCH4III | ACNGT | 3 cut(s) | 364, 604, 2083 |
| HpyCH4IV | ACGT | 5 cut(s) | 129, 183, 703, 745, 937 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1169, 1921, 2132, 2237, 2287 |
| HpyF3I | CTNAG | 6 cut(s) | 36, 122, 1242, 1839, 2022, 2438 |
| HpySE526I | ACGT | 5 cut(s) | 129, 183, 703, 745, 937 |
| Hsp92I | GRCGYC | 2 cut(s) | 129, 306 |
| Ksp22I | TGATCA | 4 cut(s) | 354, 1345, 1474, 1705 |
| LmnI | GCTCC | 6 cut(s) | 231, 1113, 1270, 1278, 1422, 2295 |
| Lsp1109I | GCAGC | 1 cut(s) | 1364 |
| LweI | GCATC | 3 cut(s) | 232, 1138, 2113 |
| MabI | ACCWGGT | 1 cut(s) | 730 |
| MaeII | ACGT | 5 cut(s) | 129, 183, 703, 745, 937 |
| MaeIII | GTNAC | 9 cut(s) | 307, 438, 598, 646, 908, 919, 1597, 1990, 2201 |
| MboII | GAAGA | 9 cut(s) | 263, 381, 398, 562, 622, 1537, 1990, 2089, 2257 |
| MflI | RGATCY | 2 cut(s) | 1940, 2343 |
| MhlI | GDGCHC | 3 cut(s) | 585, 1275, 2090 |
| MlsI | TGGCCA | 1 cut(s) | 2493 |
| MluI | ACGCGT | 1 cut(s) | 1918 |
| MluNI | TGGCCA | 1 cut(s) | 2493 |
| MlyI | GAGTC | 5 cut(s) | 92, 1389, 2116, 2149, 2353 |
| Mox20I | TGGCCA | 1 cut(s) | 2493 |
| MscI | TGGCCA | 1 cut(s) | 2493 |
| MseI | TTAA | 9 cut(s) | 857, 863, 1139, 1440, 1622, 1647, 2253, 2481, 2576 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1701, 2165, 2601 |
| Msp20I | TGGCCA | 1 cut(s) | 2493 |
| MspI | CCGG | 1 cut(s) | 1849 |
| MspR9I | CCNGG | 5 cut(s) | 732, 1421, 1570, 1849, 2451 |
| Mva1269I | GAATGC | 1 cut(s) | 1917 |
| MvaI | CCWGG | 4 cut(s) | 732, 1421, 1570, 2451 |
| MvnI | CGCG | 1 cut(s) | 1920 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1169, 1921, 2132, 2237, 2287 |
| NciI | CCSGG | 1 cut(s) | 1849 |
| NdeI | CATATG | 1 cut(s) | 2598 |
| NlaIV | GGNNCC | 2 cut(s) | 1767, 2088 |
| NmuCI | GTSAC | 7 cut(s) | 307, 598, 646, 908, 919, 1597, 2201 |
| PaeR7I | CTCGAG | 2 cut(s) | 1863, 2361 |
| PagI | TCATGA | 1 cut(s) | 2371 |
| PaqCI | CACCTGC | 1 cut(s) | 683 |
| PceI | AGGCCT | 1 cut(s) | 2327 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2328 |
| PctI | GAATGC | 1 cut(s) | 1917 |
| PfeI | GAWTC | 2 cut(s) | 833, 1859 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 286 |
| PfoI | TCCNGGA | 1 cut(s) | 1419 |
| PkrI | GCNGC | 1 cut(s) | 1354 |
| PleI | GAGTC | 5 cut(s) | 91, 1389, 2115, 2149, 2353 |
| PpsI | GAGTC | 5 cut(s) | 91, 1389, 2115, 2149, 2353 |
| PsiI | TTATAA | 1 cut(s) | 2589 |
| Psp124BI | GAGCTC | 1 cut(s) | 1275 |
| Psp1406I | AACGTT | 1 cut(s) | 745 |
| Psp6I | CCWGG | 4 cut(s) | 730, 1419, 1568, 2449 |
| PspGI | CCWGG | 4 cut(s) | 730, 1419, 1568, 2449 |
| PspN4I | GGNNCC | 2 cut(s) | 1767, 2088 |
| PspOMI | GGGCCC | 1 cut(s) | 2086 |
| PspPI | GGNCC | 9 cut(s) | 139, 163, 1122, 1766, 2086, 2087, 2133, 2407, 2466 |
| PspXI | VCTCGAGB | 1 cut(s) | 2361 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2312, 2344 |
| PsuI | RGATCY | 2 cut(s) | 1940, 2343 |
| RsaI | GTAC | 4 cut(s) | 401, 736, 936, 1364 |
| RsaNI | GTAC | 4 cut(s) | 400, 735, 935, 1363 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1701, 2165, 2601 |
| SacI | GAGCTC | 1 cut(s) | 1275 |
| SaqAI | TTAA | 9 cut(s) | 857, 863, 1139, 1440, 1622, 1647, 2253, 2481, 2576 |
| SatI | GCNGC | 1 cut(s) | 1353 |
| Sau96I | GGNCC | 9 cut(s) | 139, 163, 1122, 1766, 2086, 2087, 2133, 2407, 2466 |
| ScaI | AGTACT | 1 cut(s) | 1364 |
| SchI | GAGTC | 5 cut(s) | 92, 1389, 2116, 2149, 2353 |
| ScrFI | CCNGG | 5 cut(s) | 732, 1421, 1570, 1849, 2451 |
| SduI | GDGCHC | 3 cut(s) | 585, 1275, 2090 |
| SexAI | ACCWGGT | 1 cut(s) | 730 |
| SfaNI | GCATC | 3 cut(s) | 232, 1138, 2113 |
| SfcI | CTRYAG | 3 cut(s) | 697, 1260, 2137 |
| Sfr274I | CTCGAG | 2 cut(s) | 1863, 2361 |
| SinI | GGWCC | 3 cut(s) | 139, 1122, 2466 |
| SlaI | CTCGAG | 2 cut(s) | 1863, 2361 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1701, 2165, 2601 |
| SmlI | CTYRAG | 4 cut(s) | 374, 428, 1863, 2361 |
| SmoI | CTYRAG | 4 cut(s) | 374, 428, 1863, 2361 |
| SseBI | AGGCCT | 1 cut(s) | 2327 |
| SsiI | CCGC | 1 cut(s) | 299 |
| SspI | AATATT | 1 cut(s) | 1737 |
| SstI | GAGCTC | 1 cut(s) | 1275 |
| StuI | AGGCCT | 1 cut(s) | 2327 |
| StyD4I | CCNGG | 5 cut(s) | 730, 1419, 1568, 1847, 2449 |
| StyI | CCWWGG | 1 cut(s) | 280 |
| TaaI | ACNGT | 3 cut(s) | 364, 604, 2083 |
| TaiI | ACGT | 5 cut(s) | 132, 186, 706, 748, 940 |
| TaqI | TCGA | 6 cut(s) | 831, 1428, 1864, 2118, 2362, 2497 |
| TaqII | GACCGA | 1 cut(s) | 2483 |
| TatI | WGTACW | 1 cut(s) | 1362 |
| TfiI | GAWTC | 2 cut(s) | 833, 1859 |
| Tru1I | TTAA | 9 cut(s) | 857, 863, 1139, 1440, 1622, 1647, 2253, 2481, 2576 |
| Tru9I | TTAA | 9 cut(s) | 857, 863, 1139, 1440, 1622, 1647, 2253, 2481, 2576 |
| TscAI | CASTG | 4 cut(s) | 301, 498, 2217, 2247 |
| TseFI | GTSAC | 7 cut(s) | 307, 598, 646, 908, 919, 1597, 2201 |
| TseI | GCWGC | 1 cut(s) | 1352 |
| Tsp45I | GTSAC | 7 cut(s) | 307, 598, 646, 908, 919, 1597, 2201 |
| TspGWI | ACGGA | 3 cut(s) | 1394, 2375, 2549 |
| TspRI | CASTG | 4 cut(s) | 301, 498, 2217, 2247 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 286 |
| VpaK11BI | GGWCC | 3 cut(s) | 139, 1122, 2466 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2267 |
| XapI | RAATTY | 3 cut(s) | 847, 1040, 1424 |
| XbaI | TCTAGA | 1 cut(s) | 2432 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 325 |
| XhoI | CTCGAG | 2 cut(s) | 1863, 2361 |
| ZraI | GACGTC | 1 cut(s) | 130 |
| ZrmI | AGTACT | 1 cut(s) | 1364 |