Retrotransposon gag protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 119 - 205 | 3.4e-17 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 395 |
| AciI | CCGC | 4 cut(s) | 935, 995, 1072, 1100 |
| AclWI | GGATC | 3 cut(s) | 38, 406, 965 |
| AcoI | YGGCCR | 1 cut(s) | 135 |
| AcsI | RAATTY | 1 cut(s) | 1015 |
| AfaI | GTAC | 3 cut(s) | 41, 145, 775 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 364, 1316 |
| AflII | CTTAAG | 3 cut(s) | 233, 302, 752 |
| AflIII | ACRYGT | 2 cut(s) | 877, 890 |
| AgsI | TTSAA | 3 cut(s) | 791, 947, 1196 |
| AjnI | CCWGG | 1 cut(s) | 1078 |
| Alw21I | GWGCWC | 2 cut(s) | 585, 866 |
| Alw26I | GTCTC | 1 cut(s) | 1152 |
| AlwI | GGATC | 3 cut(s) | 38, 406, 965 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 344 |
| Aor13HI | TCCGGA | 1 cut(s) | 395 |
| AoxI | GGCC | 2 cut(s) | 135, 959 |
| ApeKI | GCWGC | 2 cut(s) | 464, 644 |
| ApoI | RAATTY | 1 cut(s) | 1015 |
| AspLEI | GCGC | 1 cut(s) | 841 |
| AsuHPI | GGTGA | 2 cut(s) | 187, 397 |
| BalI | TGGCCA | 1 cut(s) | 137 |
| BbsI | GAAGAC | 2 cut(s) | 135, 360 |
| Bbv12I | GWGCWC | 2 cut(s) | 585, 866 |
| BbvI | GCAGC | 2 cut(s) | 451, 656 |
| BccI | CCATC | 3 cut(s) | 88, 898, 904 |
| BceAI | ACGGC | 1 cut(s) | 78 |
| BciT130I | CCWGG | 1 cut(s) | 1080 |
| BclI | TGATCA | 2 cut(s) | 1006, 1302 |
| BcoDI | GTCTC | 1 cut(s) | 1152 |
| BfaI | CTAG | 4 cut(s) | 53, 1095, 1247, 1290 |
| BfoI | RGCGCY | 1 cut(s) | 842 |
| BfrI | CTTAAG | 3 cut(s) | 233, 302, 752 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 461 |
| BisI | GCNGC | 2 cut(s) | 465, 645 |
| BlsI | GCNGC | 2 cut(s) | 466, 646 |
| BmcAI | AGTACT | 1 cut(s) | 775 |
| Bme1390I | CCNGG | 1 cut(s) | 1080 |
| BmrFI | CCNGG | 1 cut(s) | 1080 |
| BmsI | GCATC | 6 cut(s) | 74, 201, 277, 307, 624, 631 |
| BpiI | GAAGAC | 2 cut(s) | 135, 360 |
| Bpu10I | CCTNAGC | 2 cut(s) | 48, 369 |
| BpuEI | CTTGAG | 6 cut(s) | 115, 458, 660, 1038, 1172, 1247 |
| BsaJI | CCNNGG | 2 cut(s) | 268, 358 |
| BsaWI | WCCGGW | 1 cut(s) | 395 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 364, 1316 |
| BseAI | TCCGGA | 1 cut(s) | 395 |
| BseBI | CCWGG | 1 cut(s) | 1080 |
| BseDI | CCNNGG | 2 cut(s) | 268, 358 |
| BseGI | GGATG | 4 cut(s) | 65, 80, 292, 1009 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 364, 1316 |
| BseMII | CTCAG | 2 cut(s) | 27, 39 |
| BseRI | GAGGAG | 2 cut(s) | 1110, 1113 |
| BseXI | GCAGC | 2 cut(s) | 451, 656 |
| BshFI | GGCC | 2 cut(s) | 137, 961 |
| BsiHKAI | GWGCWC | 2 cut(s) | 585, 866 |
| BsiSI | CCGG | 2 cut(s) | 396, 496 |
| BslFI | GGGAC | 1 cut(s) | 888 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 364, 1316 |
| BsmAI | GTCTC | 1 cut(s) | 1152 |
| BsmFI | GGGAC | 1 cut(s) | 888 |
| BsmI | GAATGC | 2 cut(s) | 431, 659 |
| BsnI | GGCC | 2 cut(s) | 137, 961 |
| Bsp1286I | GDGCHC | 2 cut(s) | 585, 866 |
| Bsp13I | TCCGGA | 1 cut(s) | 395 |
| Bsp143I | GATC | 7 cut(s) | 28, 43, 398, 625, 970, 1006, 1302 |
| Bsp19I | CCATGG | 2 cut(s) | 268, 358 |
| BspACI | CCGC | 4 cut(s) | 935, 995, 1072, 1100 |
| BspANI | GGCC | 2 cut(s) | 137, 961 |
| BspCNI | CTCAG | 2 cut(s) | 28, 40 |
| BspEI | TCCGGA | 1 cut(s) | 395 |
| BspPI | GGATC | 3 cut(s) | 38, 406, 965 |
| BspTI | CTTAAG | 3 cut(s) | 233, 302, 752 |
| BssECI | CCNNGG | 2 cut(s) | 268, 358 |
| BssMI | GATC | 7 cut(s) | 28, 43, 398, 625, 970, 1006, 1302 |
| BssT1I | CCWWGG | 2 cut(s) | 268, 358 |
| Bst2UI | CCWGG | 1 cut(s) | 1080 |
| Bst4CI | ACNGT | 3 cut(s) | 143, 346, 747 |
| Bst6I | CTCTTC | 2 cut(s) | 102, 111 |
| BstAFI | CTTAAG | 3 cut(s) | 233, 302, 752 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 861 |
| BstC8I | GCNNGC | 3 cut(s) | 339, 469, 927 |
| BstDEI | CTNAG | 4 cut(s) | 36, 48, 261, 369 |
| BstDSI | CCRYGG | 2 cut(s) | 268, 358 |
| BstF5I | GGATG | 4 cut(s) | 65, 80, 292, 1009 |
| BstH2I | RGCGCY | 1 cut(s) | 842 |
| BstHHI | GCGC | 1 cut(s) | 841 |
| BstKTI | GATC | 7 cut(s) | 31, 46, 401, 628, 973, 1009, 1305 |
| BstMAI | GTCTC | 1 cut(s) | 1152 |
| BstMBI | GATC | 7 cut(s) | 28, 43, 398, 625, 970, 1006, 1302 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 461, 861, 958, 1172 |
| BstNI | CCWGG | 1 cut(s) | 1080 |
| BstNSI | RCATGY | 2 cut(s) | 881, 894 |
| BstSCI | CCNGG | 1 cut(s) | 1078 |
| BstV1I | GCAGC | 2 cut(s) | 451, 656 |
| BstV2I | GAAGAC | 2 cut(s) | 135, 360 |
| BsuRI | GGCC | 2 cut(s) | 137, 961 |
| BtgI | CCRYGG | 2 cut(s) | 268, 358 |
| BtsCI | GGATG | 4 cut(s) | 65, 80, 292, 1009 |
| BtsI | GCAGTG | 1 cut(s) | 862 |
| BtsIMutI | CAGTG | 1 cut(s) | 862 |
| Cac8I | GCNNGC | 3 cut(s) | 339, 469, 927 |
| CaiI | CAGNNNCTG | 1 cut(s) | 344 |
| CfoI | GCGC | 1 cut(s) | 841 |
| CseI | GACGC | 2 cut(s) | 748, 1220 |
| Csp6I | GTAC | 3 cut(s) | 40, 144, 774 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 75, 110 |
| CviQI | GTAC | 3 cut(s) | 40, 144, 774 |
| DdeI | CTNAG | 4 cut(s) | 36, 48, 261, 369 |
| DpnI | GATC | 7 cut(s) | 30, 45, 400, 627, 972, 1008, 1304 |
| DpnII | GATC | 7 cut(s) | 28, 43, 398, 625, 970, 1006, 1302 |
| EaeI | YGGCCR | 1 cut(s) | 135 |
| Eam1104I | CTCTTC | 2 cut(s) | 102, 111 |
| EarI | CTCTTC | 2 cut(s) | 102, 111 |
| Eco130I | CCWWGG | 2 cut(s) | 268, 358 |
| EcoRII | CCWGG | 1 cut(s) | 1078 |
| EcoT14I | CCWWGG | 2 cut(s) | 268, 358 |
| EcoT22I | ATGCAT | 1 cut(s) | 507 |
| ErhI | CCWWGG | 2 cut(s) | 268, 358 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 420, 452 |
| FaqI | GGGAC | 1 cut(s) | 888 |
| FauI | CCCGC | 2 cut(s) | 988, 1079 |
| FauNDI | CATATG | 1 cut(s) | 315 |
| FbaI | TGATCA | 2 cut(s) | 1006, 1302 |
| Fnu4HI | GCNGC | 2 cut(s) | 465, 645 |
| FokI | GGATG | 4 cut(s) | 52, 67, 299, 996 |
| Fsp4HI | GCNGC | 2 cut(s) | 465, 645 |
| FspBI | CTAG | 4 cut(s) | 53, 1095, 1247, 1290 |
| GlaI | GCGC | 1 cut(s) | 840 |
| GluI | GCNGC | 2 cut(s) | 465, 645 |
| HaeII | RGCGCY | 1 cut(s) | 842 |
| HaeIII | GGCC | 2 cut(s) | 137, 961 |
| HapII | CCGG | 2 cut(s) | 396, 496 |
| HgaI | GACGC | 2 cut(s) | 748, 1220 |
| HhaI | GCGC | 1 cut(s) | 841 |
| Hin6I | GCGC | 1 cut(s) | 839 |
| HinP1I | GCGC | 1 cut(s) | 839 |
| HincII | GTYRAC | 1 cut(s) | 1244 |
| HindII | GTYRAC | 1 cut(s) | 1244 |
| HinfI | GANTC | 8 cut(s) | 247, 415, 512, 537, 673, 1083, 1222, 1240 |
| HpaII | CCGG | 2 cut(s) | 396, 496 |
| HphI | GGTGA | 2 cut(s) | 187, 397 |
| Hpy166II | GTNNAC | 1 cut(s) | 1244 |
| Hpy188I | TCNGA | 5 cut(s) | 210, 580, 886, 1014, 1296 |
| Hpy188III | TCNNGA | 5 cut(s) | 47, 327, 396, 1151, 1226 |
| Hpy8I | GTNNAC | 1 cut(s) | 1244 |
| HpyAV | CCTTC | 5 cut(s) | 6, 402, 472, 596, 602 |
| HpyCH4III | ACNGT | 3 cut(s) | 143, 346, 747 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 192, 298, 467, 491, 505, 644, 855, 1048 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 461, 861, 958, 1172 |
| HpyF3I | CTNAG | 4 cut(s) | 36, 48, 261, 369 |
| HspAI | GCGC | 1 cut(s) | 839 |
| Kpn2I | TCCGGA | 1 cut(s) | 395 |
| Ksp22I | TGATCA | 2 cut(s) | 1006, 1302 |
| Kzo9I | GATC | 7 cut(s) | 28, 43, 398, 625, 970, 1006, 1302 |
| LmnI | GCTCC | 7 cut(s) | 307, 580, 656, 907, 1026, 1141, 1290 |
| Lsp1109I | GCAGC | 2 cut(s) | 451, 656 |
| LweI | GCATC | 6 cut(s) | 74, 201, 277, 307, 624, 631 |
| MaeI | CTAG | 4 cut(s) | 53, 1095, 1247, 1290 |
| MaeIII | GTNAC | 1 cut(s) | 747 |
| MalI | GATC | 7 cut(s) | 30, 45, 400, 627, 972, 1008, 1304 |
| MboI | GATC | 7 cut(s) | 28, 43, 398, 625, 970, 1006, 1302 |
| MboII | GAAGA | 5 cut(s) | 119, 125, 128, 140, 365 |
| MhlI | GDGCHC | 2 cut(s) | 585, 866 |
| MlsI | TGGCCA | 1 cut(s) | 137 |
| MluCI | AATT | 7 cut(s) | 385, 725, 778, 791, 797, 1015, 1063 |
| MluNI | TGGCCA | 1 cut(s) | 137 |
| MlyI | GAGTC | 3 cut(s) | 521, 667, 1249 |
| MmeI | TCCRAC | 1 cut(s) | 919 |
| Mox20I | TGGCCA | 1 cut(s) | 137 |
| Mph1103I | ATGCAT | 1 cut(s) | 507 |
| MroI | TCCGGA | 1 cut(s) | 395 |
| MscI | TGGCCA | 1 cut(s) | 137 |
| MseI | TTAA | 6 cut(s) | 234, 303, 698, 753, 809, 1020 |
| Msp20I | TGGCCA | 1 cut(s) | 137 |
| MspCI | CTTAAG | 3 cut(s) | 233, 302, 752 |
| MspI | CCGG | 2 cut(s) | 396, 496 |
| MspR9I | CCNGG | 1 cut(s) | 1080 |
| Mva1269I | GAATGC | 2 cut(s) | 431, 659 |
| MvaI | CCWGG | 1 cut(s) | 1080 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 461, 861, 958, 1172 |
| NcoI | CCATGG | 2 cut(s) | 268, 358 |
| NdeI | CATATG | 1 cut(s) | 315 |
| NdeII | GATC | 7 cut(s) | 28, 43, 398, 625, 970, 1006, 1302 |
| NmuCI | GTSAC | 1 cut(s) | 747 |
| NsiI | ATGCAT | 1 cut(s) | 507 |
| NspI | RCATGY | 2 cut(s) | 881, 894 |
| PciI | ACATGT | 2 cut(s) | 877, 890 |
| PctI | GAATGC | 2 cut(s) | 431, 659 |
| PfeI | GAWTC | 5 cut(s) | 247, 415, 537, 1083, 1222 |
| PkrI | GCNGC | 2 cut(s) | 466, 646 |
| PleI | GAGTC | 3 cut(s) | 520, 667, 1248 |
| PpsI | GAGTC | 3 cut(s) | 520, 667, 1248 |
| PscI | ACATGT | 2 cut(s) | 877, 890 |
| Psp6I | CCWGG | 1 cut(s) | 1078 |
| PspGI | CCWGG | 1 cut(s) | 1078 |
| PstNI | CAGNNNCTG | 1 cut(s) | 344 |
| RsaI | GTAC | 3 cut(s) | 41, 145, 775 |
| RsaNI | GTAC | 3 cut(s) | 40, 144, 774 |
| SaqAI | TTAA | 6 cut(s) | 234, 303, 698, 753, 809, 1020 |
| SatI | GCNGC | 2 cut(s) | 465, 645 |
| Sau3AI | GATC | 7 cut(s) | 28, 43, 398, 625, 970, 1006, 1302 |
| ScaI | AGTACT | 1 cut(s) | 775 |
| SchI | GAGTC | 3 cut(s) | 521, 667, 1249 |
| ScrFI | CCNGG | 1 cut(s) | 1080 |
| SduI | GDGCHC | 2 cut(s) | 585, 866 |
| SfaNI | GCATC | 6 cut(s) | 74, 201, 277, 307, 624, 631 |
| SmlI | CTYRAG | 9 cut(s) | 94, 233, 302, 437, 675, 752, 1053, 1151, 1226 |
| SmoI | CTYRAG | 9 cut(s) | 94, 233, 302, 437, 675, 752, 1053, 1151, 1226 |
| Sse9I | AATT | 7 cut(s) | 385, 725, 778, 791, 797, 1015, 1063 |
| SsiI | CCGC | 4 cut(s) | 935, 995, 1072, 1100 |
| SspI | AATATT | 4 cut(s) | 446, 527, 599, 787 |
| SspMI | CTAG | 4 cut(s) | 53, 1095, 1247, 1290 |
| StyD4I | CCNGG | 1 cut(s) | 1078 |
| StyI | CCWWGG | 2 cut(s) | 268, 358 |
| TaaI | ACNGT | 3 cut(s) | 143, 346, 747 |
| TaqI | TCGA | 2 cut(s) | 10, 721 |
| TasI | AATT | 7 cut(s) | 385, 725, 778, 791, 797, 1015, 1063 |
| TatI | WGTACW | 1 cut(s) | 773 |
| TfiI | GAWTC | 5 cut(s) | 247, 415, 537, 1083, 1222 |
| Tru1I | TTAA | 6 cut(s) | 234, 303, 698, 753, 809, 1020 |
| Tru9I | TTAA | 6 cut(s) | 234, 303, 698, 753, 809, 1020 |
| TscAI | CASTG | 1 cut(s) | 862 |
| TseFI | GTSAC | 1 cut(s) | 747 |
| TseI | GCWGC | 2 cut(s) | 464, 644 |
| Tsp45I | GTSAC | 1 cut(s) | 747 |
| TspDTI | ATGAA | 6 cut(s) | 366, 529, 546, 621, 652, 756 |
| TspRI | CASTG | 1 cut(s) | 862 |
| Vha464I | CTTAAG | 3 cut(s) | 233, 302, 752 |
| XapI | RAATTY | 1 cut(s) | 1015 |
| XceI | RCATGY | 2 cut(s) | 881, 894 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 356 |
| XspI | CTAG | 4 cut(s) | 53, 1095, 1247, 1290 |
| ZrmI | AGTACT | 1 cut(s) | 775 |
| Zsp2I | ATGCAT | 1 cut(s) | 507 |