protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 751 - 907 | 1.6e-22 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 947 - 1044 | 2.1e-33 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 971 - 1074 | 1.3e-37 | RNase H-like domain found in reverse transcriptase |
| rve | PF00665 | 1221 - 1314 | 3.8e-16 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3803 |
| Acc16I | TGCGCA | 1 cut(s) | 1590 |
| Acc36I | ACCTGC | 4 cut(s) | 52, 521, 1330, 2741 |
| Acc65I | GGTACC | 1 cut(s) | 3156 |
| AccB1I | GGYRCC | 5 cut(s) | 656, 1472, 1822, 2236, 3156 |
| AccBSI | CCGCTC | 1 cut(s) | 2733 |
| AccI | GTMKAC | 2 cut(s) | 512, 3280 |
| AccIII | TCCGGA | 1 cut(s) | 3325 |
| AciI | CCGC | 6 cut(s) | 47, 2222, 2638, 2731, 3371, 3858 |
| AclI | AACGTT | 3 cut(s) | 360, 3401, 3909 |
| AclWI | GGATC | 9 cut(s) | 31, 52, 154, 284, 333, 1127, 1140, 2210, 2430 |
| AcoI | YGGCCR | 1 cut(s) | 2356 |
| AcuI | CTGAAG | 2 cut(s) | 1794, 1937 |
| AcvI | CACGTG | 1 cut(s) | 128 |
| AcyI | GRCGYC | 2 cut(s) | 2136, 3300 |
| AfaI | GTAC | 5 cut(s) | 1332, 2506, 3118, 3158, 3905 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 50, 1063, 1384, 1437, 1483, 1684, 2301, 2818 |
| AflII | CTTAAG | 2 cut(s) | 1838, 3440 |
| AflIII | ACRYGT | 3 cut(s) | 125, 1723, 3578 |
| AhlI | ACTAGT | 2 cut(s) | 1169, 3283 |
| AjnI | CCWGG | 6 cut(s) | 313, 1135, 2500, 3017, 3348, 3767 |
| AleI | CACNNNNGTG | 2 cut(s) | 2210, 2717 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3478, 3510 |
| Alw21I | GWGCWC | 2 cut(s) | 373, 1692 |
| Alw26I | GTCTC | 3 cut(s) | 1042, 1096, 2813 |
| Alw44I | GTGCAC | 1 cut(s) | 369 |
| AlwI | GGATC | 9 cut(s) | 31, 52, 154, 284, 333, 1127, 1140, 2210, 2430 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 17 |
| Aor13HI | TCCGGA | 1 cut(s) | 3325 |
| AoxI | GGCC | 7 cut(s) | 75, 107, 930, 990, 2356, 2795, 2964 |
| ApaLI | GTGCAC | 1 cut(s) | 369 |
| ApeKI | GCWGC | 2 cut(s) | 11, 3146 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2250, 2282 |
| AseI | ATTAAT | 1 cut(s) | 3506 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3096 |
| Asp718I | GGTACC | 1 cut(s) | 3156 |
| AspA2I | CCTAGG | 1 cut(s) | 281 |
| AspLEI | GCGC | 2 cut(s) | 1591, 2766 |
| AsuHPI | GGTGA | 6 cut(s) | 320, 1084, 1265, 1358, 1508, 2163 |
| AsuII | TTCGAA | 3 cut(s) | 446, 1179, 2651 |
| AvaII | GGWCC | 7 cut(s) | 136, 2308, 2728, 3021, 3611, 3686, 4007 |
| AvrII | CCTAGG | 1 cut(s) | 281 |
| AxyI | CCTNAGG | 2 cut(s) | 1311, 1680 |
| BaeGI | GKGCMC | 2 cut(s) | 373, 3251 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1611, 1644, 3108, 3141 |
| BamHI | GGATCC | 1 cut(s) | 1132 |
| BanI | GGYRCC | 5 cut(s) | 656, 1472, 1822, 2236, 3156 |
| BanII | GRGCYC | 2 cut(s) | 1395, 1692 |
| BarI | GAAGNNNNNNTAC | 8 cut(s) | 1753, 1785, 1853, 1885, 1935, 1967, 3288, 3320 |
| BbrPI | CACGTG | 1 cut(s) | 128 |
| BbsI | GAAGAC | 2 cut(s) | 2438, 3303 |
| Bbv12I | GWGCWC | 2 cut(s) | 373, 1692 |
| BbvI | GCAGC | 2 cut(s) | 23, 3158 |
| BceAI | ACGGC | 6 cut(s) | 677, 1458, 1710, 2464, 2951, 4080 |
| BciT130I | CCWGG | 6 cut(s) | 315, 1137, 2502, 3019, 3350, 3769 |
| BciVI | GTATCC | 3 cut(s) | 1545, 1612, 3195 |
| BclI | TGATCA | 4 cut(s) | 492, 2332, 3139, 3499 |
| BcoDI | GTCTC | 3 cut(s) | 1042, 1096, 2813 |
| BcuI | ACTAGT | 2 cut(s) | 1169, 3283 |
| BfmI | CTRYAG | 4 cut(s) | 816, 2278, 2467, 3309 |
| BfoI | RGCGCY | 1 cut(s) | 2767 |
| BfrI | CTTAAG | 2 cut(s) | 1838, 3440 |
| BfuAI | ACCTGC | 4 cut(s) | 52, 521, 1330, 2741 |
| BfuI | GTATCC | 3 cut(s) | 1545, 1612, 3195 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 399, 938, 4052 |
| BglII | AGATCT | 2 cut(s) | 747, 2686 |
| BisI | GCNGC | 4 cut(s) | 12, 48, 2639, 3147 |
| BlnI | CCTAGG | 1 cut(s) | 281 |
| BlpI | GCTNAGC | 1 cut(s) | 3453 |
| BlsI | GCNGC | 4 cut(s) | 13, 49, 2640, 3148 |
| Bme1390I | CCNGG | 6 cut(s) | 315, 1137, 2502, 3019, 3350, 3769 |
| Bme18I | GGWCC | 7 cut(s) | 136, 2308, 2728, 3021, 3611, 3686, 4007 |
| BmrFI | CCNGG | 6 cut(s) | 315, 1137, 2502, 3019, 3350, 3769 |
| BpiI | GAAGAC | 2 cut(s) | 2438, 3303 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1076, 1108, 1379, 1411, 2717, 2749 |
| BpmI | CTGGAG | 1 cut(s) | 2484 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3896 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3453 |
| Bpu14I | TTCGAA | 3 cut(s) | 446, 1179, 2651 |
| Bsa29I | ATCGAT | 1 cut(s) | 1294 |
| BsaAI | YACGTR | 1 cut(s) | 128 |
| BsaHI | GRCGYC | 2 cut(s) | 2136, 3300 |
| BsaJI | CCNNGG | 5 cut(s) | 281, 1136, 3185, 3362, 4002 |
| BsaWI | WCCGGW | 1 cut(s) | 3325 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 868, 898, 2216, 2246 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 50, 1063, 1384, 1437, 1483, 1684, 2301, 2818 |
| Bse118I | RCCGGY | 1 cut(s) | 2354 |
| Bse1I | ACTGG | 3 cut(s) | 2174, 2260, 3604 |
| Bse21I | CCTNAGG | 2 cut(s) | 1311, 1680 |
| Bse3DI | GCAATG | 4 cut(s) | 1533, 1635, 2409, 2500 |
| BseAI | TCCGGA | 1 cut(s) | 3325 |
| BseBI | CCWGG | 6 cut(s) | 315, 1137, 2502, 3019, 3350, 3769 |
| BseCI | ATCGAT | 1 cut(s) | 1294 |
| BseDI | CCNNGG | 5 cut(s) | 281, 1136, 3185, 3362, 4002 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 50, 1063, 1384, 1437, 1483, 1684, 2301, 2818 |
| BseMI | GCAATG | 4 cut(s) | 1533, 1635, 2409, 2500 |
| BseMII | CTCAG | 4 cut(s) | 573, 1107, 2166, 2255 |
| BseNI | ACTGG | 3 cut(s) | 2174, 2260, 3604 |
| BseRI | GAGGAG | 5 cut(s) | 782, 785, 1403, 1700, 2801 |
| BseSI | GKGCMC | 2 cut(s) | 373, 3251 |
| BseXI | GCAGC | 2 cut(s) | 23, 3158 |
| BseYI | CCCAGC | 1 cut(s) | 1360 |
| BsgI | GTGCAG | 2 cut(s) | 1358, 2874 |
| BshFI | GGCC | 7 cut(s) | 77, 109, 932, 992, 2358, 2797, 2966 |
| BshNI | GGYRCC | 5 cut(s) | 656, 1472, 1822, 2236, 3156 |
| BshVI | ATCGAT | 1 cut(s) | 1294 |
| BsiHKAI | GWGCWC | 2 cut(s) | 373, 1692 |
| BsiSI | CCGG | 2 cut(s) | 2355, 3326 |
| BslFI | GGGAC | 3 cut(s) | 1413, 2470, 4020 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 50, 1063, 1384, 1437, 1483, 1684, 2301, 2818 |
| BsmAI | GTCTC | 3 cut(s) | 1042, 1096, 2813 |
| BsmBI | CGTCTC | 1 cut(s) | 2813 |
| BsmFI | GGGAC | 3 cut(s) | 1413, 2470, 4020 |
| BsmI | GAATGC | 4 cut(s) | 1119, 2224, 2481, 2858 |
| BsnI | GGCC | 7 cut(s) | 77, 109, 932, 992, 2358, 2797, 2966 |
| Bsp119I | TTCGAA | 3 cut(s) | 446, 1179, 2651 |
| Bsp1286I | GDGCHC | 4 cut(s) | 373, 1395, 1692, 3251 |
| Bsp13I | TCCGGA | 1 cut(s) | 3325 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3453 |
| BspACI | CCGC | 6 cut(s) | 47, 2222, 2638, 2731, 3371, 3858 |
| BspANI | GGCC | 7 cut(s) | 77, 109, 932, 992, 2358, 2797, 2966 |
| BspCNI | CTCAG | 4 cut(s) | 574, 1106, 2165, 2254 |
| BspDI | ATCGAT | 1 cut(s) | 1294 |
| BspEI | TCCGGA | 1 cut(s) | 3325 |
| BspHI | TCATGA | 2 cut(s) | 631, 1434 |
| BspMI | ACCTGC | 4 cut(s) | 52, 521, 1330, 2741 |
| BspPI | GGATC | 9 cut(s) | 31, 52, 154, 284, 333, 1127, 1140, 2210, 2430 |
| BspT104I | TTCGAA | 3 cut(s) | 446, 1179, 2651 |
| BspT107I | GGYRCC | 5 cut(s) | 656, 1472, 1822, 2236, 3156 |
| BspTI | CTTAAG | 2 cut(s) | 1838, 3440 |
| BsrBI | CCGCTC | 1 cut(s) | 2733 |
| BsrDI | GCAATG | 4 cut(s) | 1533, 1635, 2409, 2500 |
| BsrFI | RCCGGY | 1 cut(s) | 2354 |
| BsrI | ACTGG | 3 cut(s) | 2174, 2260, 3604 |
| BssAI | RCCGGY | 1 cut(s) | 2354 |
| BssECI | CCNNGG | 5 cut(s) | 281, 1136, 3185, 3362, 4002 |
| BssNI | GRCGYC | 2 cut(s) | 2136, 3300 |
| BssT1I | CCWWGG | 3 cut(s) | 281, 3185, 3362 |
| Bst2UI | CCWGG | 6 cut(s) | 315, 1137, 2502, 3019, 3350, 3769 |
| Bst4CI | ACNGT | 5 cut(s) | 817, 1058, 2209, 2251, 4003 |
| Bst6I | CTCTTC | 1 cut(s) | 3344 |
| BstACI | GRCGYC | 2 cut(s) | 2136, 3300 |
| BstAFI | CTTAAG | 2 cut(s) | 1838, 3440 |
| BstBAI | YACGTR | 1 cut(s) | 128 |
| BstBI | TTCGAA | 3 cut(s) | 446, 1179, 2651 |
| BstC8I | GCNNGC | 4 cut(s) | 684, 2356, 3423, 3833 |
| BstDSI | CCRYGG | 1 cut(s) | 4002 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1435, 2816 |
| BstH2I | RGCGCY | 1 cut(s) | 2767 |
| BstHHI | GCGC | 2 cut(s) | 1591, 2766 |
| BstMAI | GTCTC | 3 cut(s) | 1042, 1096, 2813 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 399, 527, 938, 1417, 1957, 2963, 4052 |
| BstNI | CCWGG | 6 cut(s) | 315, 1137, 2502, 3019, 3350, 3769 |
| BstNSI | RCATGY | 7 cut(s) | 197, 1727, 2448, 2750, 3425, 3582, 3835 |
| BstSCI | CCNGG | 6 cut(s) | 313, 1135, 2500, 3017, 3348, 3767 |
| BstSFI | CTRYAG | 4 cut(s) | 816, 2278, 2467, 3309 |
| BstSLI | GKGCMC | 2 cut(s) | 373, 3251 |
| BstV1I | GCAGC | 2 cut(s) | 23, 3158 |
| BstV2I | GAAGAC | 2 cut(s) | 2438, 3303 |
| BstX2I | RGATCY | 4 cut(s) | 23, 747, 1132, 2686 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2913, 3599 |
| BstYI | RGATCY | 4 cut(s) | 23, 747, 1132, 2686 |
| Bsu15I | ATCGAT | 1 cut(s) | 1294 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1311, 1680 |
| BsuI | GTATCC | 3 cut(s) | 1545, 1612, 3195 |
| BsuRI | GGCC | 7 cut(s) | 77, 109, 932, 992, 2358, 2797, 2966 |
| BsuTUI | ATCGAT | 1 cut(s) | 1294 |
| BtgI | CCRYGG | 1 cut(s) | 4002 |
| BtsIMutI | CAGTG | 1 cut(s) | 1818 |
| BveI | ACCTGC | 4 cut(s) | 52, 521, 1330, 2741 |
| Cac8I | GCNNGC | 4 cut(s) | 684, 2356, 3423, 3833 |
| CaiI | CAGNNNCTG | 1 cut(s) | 17 |
| CciI | TCATGA | 2 cut(s) | 631, 1434 |
| CfoI | GCGC | 2 cut(s) | 1591, 2766 |
| Cfr10I | RCCGGY | 1 cut(s) | 2354 |
| ClaI | ATCGAT | 1 cut(s) | 1294 |
| CseI | GACGC | 3 cut(s) | 2125, 2951, 3308 |
| Csp6I | GTAC | 5 cut(s) | 1331, 2505, 3117, 3157, 3904 |
| CviQI | GTAC | 5 cut(s) | 1331, 2505, 3117, 3157, 3904 |
| DraI | TTTAAA | 1 cut(s) | 3633 |
| EaeI | YGGCCR | 1 cut(s) | 2356 |
| Eam1104I | CTCTTC | 1 cut(s) | 3344 |
| EarI | CTCTTC | 1 cut(s) | 3344 |
| Ecl136II | GAGCTC | 1 cut(s) | 1690 |
| Eco130I | CCWWGG | 3 cut(s) | 281, 3185, 3362 |
| Eco24I | GRGCYC | 2 cut(s) | 1395, 1692 |
| Eco32I | GATATC | 1 cut(s) | 1993 |
| Eco47I | GGWCC | 7 cut(s) | 136, 2308, 2728, 3021, 3611, 3686, 4007 |
| Eco53kI | GAGCTC | 1 cut(s) | 1690 |
| Eco57I | CTGAAG | 2 cut(s) | 1794, 1937 |
| Eco72I | CACGTG | 1 cut(s) | 128 |
| Eco81I | CCTNAGG | 2 cut(s) | 1311, 1680 |
| EcoICRI | GAGCTC | 1 cut(s) | 1690 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1435, 2816 |
| EcoO109I | RGGNCCY | 5 cut(s) | 75, 3021, 3611, 3686, 4007 |
| EcoRI | GAATTC | 2 cut(s) | 2028, 3566 |
| EcoRII | CCWGG | 6 cut(s) | 313, 1135, 2500, 3017, 3348, 3767 |
| EcoRV | GATATC | 1 cut(s) | 1993 |
| EcoT14I | CCWWGG | 3 cut(s) | 281, 3185, 3362 |
| EcoT22I | ATGCAT | 4 cut(s) | 1306, 2522, 3016, 3562 |
| EcoT38I | GRGCYC | 2 cut(s) | 1395, 1692 |
| ErhI | CCWWGG | 3 cut(s) | 281, 3185, 3362 |
| Esp3I | CGTCTC | 1 cut(s) | 2813 |
| FaqI | GGGAC | 3 cut(s) | 1413, 2470, 4020 |
| FauNDI | CATATG | 1 cut(s) | 3562 |
| FbaI | TGATCA | 4 cut(s) | 492, 2332, 3139, 3499 |
| FblI | GTMKAC | 2 cut(s) | 512, 3280 |
| Fnu4HI | GCNGC | 4 cut(s) | 12, 48, 2639, 3147 |
| FriOI | GRGCYC | 2 cut(s) | 1395, 1692 |
| Fsp4HI | GCNGC | 4 cut(s) | 12, 48, 2639, 3147 |
| FspI | TGCGCA | 1 cut(s) | 1590 |
| GlaI | GCGC | 2 cut(s) | 1590, 2765 |
| GluI | GCNGC | 4 cut(s) | 12, 48, 2639, 3147 |
| GsaI | CCCAGC | 1 cut(s) | 1364 |
| GsuI | CTGGAG | 1 cut(s) | 2484 |
| HaeII | RGCGCY | 1 cut(s) | 2767 |
| HaeIII | GGCC | 7 cut(s) | 77, 109, 932, 992, 2358, 2797, 2966 |
| HapII | CCGG | 2 cut(s) | 2355, 3326 |
| HgaI | GACGC | 3 cut(s) | 2125, 2951, 3308 |
| HhaI | GCGC | 2 cut(s) | 1591, 2766 |
| Hin1I | GRCGYC | 2 cut(s) | 2136, 3300 |
| Hin6I | GCGC | 2 cut(s) | 1589, 2764 |
| HinP1I | GCGC | 2 cut(s) | 1589, 2764 |
| HincII | GTYRAC | 6 cut(s) | 34, 247, 1407, 1923, 3281, 4031 |
| HindII | GTYRAC | 6 cut(s) | 34, 247, 1407, 1923, 3281, 4031 |
| HindIII | AAGCTT | 3 cut(s) | 519, 2120, 3888 |
| HinfI | GANTC | 9 cut(s) | 82, 601, 1176, 1816, 2156, 3277, 3345, 3779, 4027 |
| HpaII | CCGG | 2 cut(s) | 2355, 3326 |
| HphI | GGTGA | 6 cut(s) | 320, 1084, 1265, 1358, 1508, 2163 |
| HpyCH4III | ACNGT | 5 cut(s) | 817, 1058, 2209, 2251, 4003 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 399, 527, 938, 1417, 1957, 2963, 4052 |
| Hsp92I | GRCGYC | 2 cut(s) | 2136, 3300 |
| HspAI | GCGC | 2 cut(s) | 1589, 2764 |
| Kpn2I | TCCGGA | 1 cut(s) | 3325 |
| KpnI | GGTACC | 1 cut(s) | 3160 |
| KroI | GCCGGC | 1 cut(s) | 2354 |
| KroNI | GCCGGC | 1 cut(s) | 2356 |
| Ksp22I | TGATCA | 4 cut(s) | 492, 2332, 3139, 3499 |
| LmnI | GCTCC | 4 cut(s) | 1390, 1687, 2045, 2503 |
| Lsp1109I | GCAGC | 2 cut(s) | 23, 3158 |
| MaeIII | GTNAC | 8 cut(s) | 645, 694, 802, 2251, 2393, 2916, 2939, 3910 |
| MbiI | CCGCTC | 1 cut(s) | 2733 |
| MfeI | CAATTG | 2 cut(s) | 1971, 4080 |
| MflI | RGATCY | 4 cut(s) | 23, 747, 1132, 2686 |
| MhlI | GDGCHC | 4 cut(s) | 373, 1395, 1692, 3251 |
| MlyI | GAGTC | 4 cut(s) | 610, 2150, 3286, 4036 |
| MmeI | TCCRAC | 7 cut(s) | 286, 298, 323, 409, 755, 899, 1630 |
| Mph1103I | ATGCAT | 4 cut(s) | 1306, 2522, 3016, 3562 |
| MroI | TCCGGA | 1 cut(s) | 3325 |
| MroNI | GCCGGC | 1 cut(s) | 2354 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3096 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1269, 1604, 1704, 1707, 2210, 2717 |
| MspA1I | CMGCKG | 2 cut(s) | 1097, 1364 |
| MspCI | CTTAAG | 2 cut(s) | 1838, 3440 |
| MspI | CCGG | 2 cut(s) | 2355, 3326 |
| MspR9I | CCNGG | 6 cut(s) | 315, 1137, 2502, 3019, 3350, 3769 |
| MunI | CAATTG | 2 cut(s) | 1971, 4080 |
| Mva1269I | GAATGC | 4 cut(s) | 1119, 2224, 2481, 2858 |
| MvaI | CCWGG | 6 cut(s) | 315, 1137, 2502, 3019, 3350, 3769 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 399, 527, 938, 1417, 1957, 2963, 4052 |
| NaeI | GCCGGC | 1 cut(s) | 2356 |
| NdeI | CATATG | 1 cut(s) | 3562 |
| NgoMIV | GCCGGC | 1 cut(s) | 2354 |
| NmuCI | GTSAC | 4 cut(s) | 802, 2251, 2916, 2939 |
| NsbI | TGCGCA | 1 cut(s) | 1590 |
| NsiI | ATGCAT | 4 cut(s) | 1306, 2522, 3016, 3562 |
| NspI | RCATGY | 7 cut(s) | 197, 1727, 2448, 2750, 3425, 3582, 3835 |
| NspV | TTCGAA | 3 cut(s) | 446, 1179, 2651 |
| OliI | CACNNNNGTG | 2 cut(s) | 2210, 2717 |
| PaeI | GCATGC | 2 cut(s) | 3425, 3835 |
| PagI | TCATGA | 2 cut(s) | 631, 1434 |
| PciI | ACATGT | 2 cut(s) | 1723, 3578 |
| PctI | GAATGC | 4 cut(s) | 1119, 2224, 2481, 2858 |
| PdiI | GCCGGC | 1 cut(s) | 2356 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3096 |
| PfeI | GAWTC | 5 cut(s) | 82, 1176, 1816, 3345, 3779 |
| PfoI | TCCNGGA | 2 cut(s) | 313, 3017 |
| PkrI | GCNGC | 4 cut(s) | 13, 49, 2640, 3148 |
| PleI | GAGTC | 4 cut(s) | 609, 2150, 3285, 4035 |
| PmaCI | CACGTG | 1 cut(s) | 128 |
| PmlI | CACGTG | 1 cut(s) | 128 |
| PpsI | GAGTC | 4 cut(s) | 609, 2150, 3285, 4035 |
| Ppu21I | YACGTR | 1 cut(s) | 128 |
| PpuMI | RGGWCCY | 4 cut(s) | 3021, 3611, 3686, 4007 |
| PscI | ACATGT | 2 cut(s) | 1723, 3578 |
| PshBI | ATTAAT | 1 cut(s) | 3506 |
| PsiI | TTATAA | 1 cut(s) | 3803 |
| Psp124BI | GAGCTC | 1 cut(s) | 1692 |
| Psp1406I | AACGTT | 3 cut(s) | 360, 3401, 3909 |
| Psp5II | RGGWCCY | 4 cut(s) | 3021, 3611, 3686, 4007 |
| Psp6I | CCWGG | 6 cut(s) | 313, 1135, 2500, 3017, 3348, 3767 |
| PspCI | CACGTG | 1 cut(s) | 128 |
| PspFI | CCCAGC | 1 cut(s) | 1360 |
| PspGI | CCWGG | 6 cut(s) | 313, 1135, 2500, 3017, 3348, 3767 |
| PspPPI | RGGWCCY | 4 cut(s) | 3021, 3611, 3686, 4007 |
| PstNI | CAGNNNCTG | 1 cut(s) | 17 |
| PsuI | RGATCY | 4 cut(s) | 23, 747, 1132, 2686 |
| PvuII | CAGCTG | 2 cut(s) | 1097, 1364 |
| RsaI | GTAC | 5 cut(s) | 1332, 2506, 3118, 3158, 3905 |
| RsaNI | GTAC | 5 cut(s) | 1331, 2505, 3117, 3157, 3904 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1269, 1604, 1704, 1707, 2210, 2717 |
| SacI | GAGCTC | 1 cut(s) | 1692 |
| SalI | GTCGAC | 1 cut(s) | 3279 |
| SatI | GCNGC | 4 cut(s) | 12, 48, 2639, 3147 |
| SchI | GAGTC | 4 cut(s) | 610, 2150, 3286, 4036 |
| ScrFI | CCNGG | 6 cut(s) | 315, 1137, 2502, 3019, 3350, 3769 |
| SduI | GDGCHC | 4 cut(s) | 373, 1395, 1692, 3251 |
| SfcI | CTRYAG | 4 cut(s) | 816, 2278, 2467, 3309 |
| SfuI | TTCGAA | 3 cut(s) | 446, 1179, 2651 |
| SinI | GGWCC | 7 cut(s) | 136, 2308, 2728, 3021, 3611, 3686, 4007 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1269, 1604, 1704, 1707, 2210, 2717 |
| SpeI | ACTAGT | 2 cut(s) | 1169, 3283 |
| SphI | GCATGC | 2 cut(s) | 3425, 3835 |
| SsiI | CCGC | 6 cut(s) | 47, 2222, 2638, 2731, 3371, 3858 |
| SspI | AATATT | 1 cut(s) | 3491 |
| SstI | GAGCTC | 1 cut(s) | 1692 |
| StyD4I | CCNGG | 6 cut(s) | 313, 1135, 2500, 3017, 3348, 3767 |
| StyI | CCWWGG | 3 cut(s) | 281, 3185, 3362 |
| TaaI | ACNGT | 5 cut(s) | 817, 1058, 2209, 2251, 4003 |
| TaqI | TCGA | 8 cut(s) | 446, 1179, 1294, 2026, 2263, 2651, 3280, 3651 |
| TatI | WGTACW | 2 cut(s) | 1330, 3903 |
| TauI | GCSGC | 2 cut(s) | 50, 2641 |
| TfiI | GAWTC | 5 cut(s) | 82, 1176, 1816, 3345, 3779 |
| TscAI | CASTG | 1 cut(s) | 1818 |
| TseFI | GTSAC | 4 cut(s) | 802, 2251, 2916, 2939 |
| TseI | GCWGC | 2 cut(s) | 11, 3146 |
| Tsp45I | GTSAC | 4 cut(s) | 802, 2251, 2916, 2939 |
| TspRI | CASTG | 1 cut(s) | 1818 |
| Vha464I | CTTAAG | 2 cut(s) | 1838, 3440 |
| VneI | GTGCAC | 1 cut(s) | 369 |
| VpaK11BI | GGWCC | 7 cut(s) | 136, 2308, 2728, 3021, 3611, 3686, 4007 |
| VspI | ATTAAT | 1 cut(s) | 3506 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1435, 2816 |
| XceI | RCATGY | 7 cut(s) | 197, 1727, 2448, 2750, 3425, 3582, 3835 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3310 |
| XmaJI | CCTAGG | 1 cut(s) | 281 |
| XmiI | GTMKAC | 2 cut(s) | 512, 3280 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3096 |
| Zsp2I | ATGCAT | 4 cut(s) | 1306, 2522, 3016, 3562 |