transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| rve | PF00665 | 194 - 243 | 4.5e-06 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 519 |
| Acc36I | ACCTGC | 2 cut(s) | 199, 605 |
| Acc65I | GGTACC | 1 cut(s) | 150 |
| AccB1I | GGYRCC | 1 cut(s) | 150 |
| AccII | CGCG | 1 cut(s) | 206 |
| AciI | CCGC | 1 cut(s) | 482 |
| AclWI | GGATC | 2 cut(s) | 412, 425 |
| AcuI | CTGAAG | 2 cut(s) | 240, 413 |
| AcvI | CACGTG | 1 cut(s) | 659 |
| AcyI | GRCGYC | 2 cut(s) | 43, 516 |
| AfaI | GTAC | 3 cut(s) | 83, 152, 700 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 54 |
| AflIII | ACRYGT | 1 cut(s) | 658 |
| AgsI | TTSAA | 5 cut(s) | 130, 140, 169, 603, 625 |
| AjnI | CCWGG | 2 cut(s) | 587, 641 |
| AluBI | AGCT | 1 cut(s) | 553 |
| AluI | AGCT | 1 cut(s) | 553 |
| AlwI | GGATC | 2 cut(s) | 412, 425 |
| AoxI | GGCC | 2 cut(s) | 342, 393 |
| ApeKI | GCWGC | 2 cut(s) | 465, 550 |
| Asp718I | GGTACC | 1 cut(s) | 150 |
| AspLEI | GCGC | 1 cut(s) | 208 |
| AspS9I | GGNCC | 1 cut(s) | 484 |
| AsuHPI | GGTGA | 2 cut(s) | 88, 125 |
| AvaII | GGWCC | 1 cut(s) | 484 |
| BamHI | GGATCC | 1 cut(s) | 417 |
| BanI | GGYRCC | 1 cut(s) | 150 |
| BbrPI | CACGTG | 1 cut(s) | 659 |
| BbsI | GAAGAC | 1 cut(s) | 519 |
| BbvI | GCAGC | 2 cut(s) | 477, 562 |
| BccI | CCATC | 3 cut(s) | 104, 408, 668 |
| BciT130I | CCWGG | 2 cut(s) | 589, 643 |
| BclI | TGATCA | 2 cut(s) | 330, 381 |
| BfaI | CTAG | 3 cut(s) | 254, 324, 443 |
| BfmI | CTRYAG | 1 cut(s) | 527 |
| BfuAI | ACCTGC | 2 cut(s) | 199, 605 |
| BisI | GCNGC | 2 cut(s) | 466, 551 |
| BlsI | GCNGC | 2 cut(s) | 467, 552 |
| Bme1390I | CCNGG | 2 cut(s) | 589, 643 |
| Bme18I | GGWCC | 1 cut(s) | 484 |
| BmgT120I | GGNCC | 1 cut(s) | 484 |
| BmiI | GGNNCC | 4 cut(s) | 152, 288, 321, 419 |
| BmrFI | CCNGG | 2 cut(s) | 589, 643 |
| BmsI | GCATC | 1 cut(s) | 265 |
| BpiI | GAAGAC | 1 cut(s) | 519 |
| BpmI | CTGGAG | 1 cut(s) | 371 |
| Bsa29I | ATCGAT | 1 cut(s) | 75 |
| BsaAI | YACGTR | 1 cut(s) | 659 |
| BsaHI | GRCGYC | 2 cut(s) | 43, 516 |
| BsaJI | CCNNGG | 2 cut(s) | 99, 297 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 54 |
| Bse1I | ACTGG | 1 cut(s) | 354 |
| Bse3DI | GCAATG | 1 cut(s) | 231 |
| BseBI | CCWGG | 2 cut(s) | 589, 643 |
| BseCI | ATCGAT | 1 cut(s) | 75 |
| BseDI | CCNNGG | 2 cut(s) | 99, 297 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 54 |
| BseMI | GCAATG | 1 cut(s) | 231 |
| BseNI | ACTGG | 1 cut(s) | 354 |
| BseRI | GAGGAG | 1 cut(s) | 332 |
| BseXI | GCAGC | 2 cut(s) | 477, 562 |
| Bsh1236I | CGCG | 1 cut(s) | 206 |
| BshFI | GGCC | 2 cut(s) | 344, 395 |
| BshNI | GGYRCC | 1 cut(s) | 150 |
| BshVI | ATCGAT | 1 cut(s) | 75 |
| BslFI | GGGAC | 3 cut(s) | 30, 103, 323 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 54 |
| BsmFI | GGGAC | 3 cut(s) | 30, 103, 323 |
| BsnI | GGCC | 2 cut(s) | 344, 395 |
| Bsp1407I | TGTACA | 1 cut(s) | 81 |
| Bsp143I | GATC | 4 cut(s) | 330, 381, 417, 447 |
| Bsp19I | CCATGG | 1 cut(s) | 99 |
| BspACI | CCGC | 1 cut(s) | 482 |
| BspANI | GGCC | 2 cut(s) | 344, 395 |
| BspDI | ATCGAT | 1 cut(s) | 75 |
| BspFNI | CGCG | 1 cut(s) | 206 |
| BspLI | GGNNCC | 4 cut(s) | 152, 288, 321, 419 |
| BspMI | ACCTGC | 2 cut(s) | 199, 605 |
| BspPI | GGATC | 2 cut(s) | 412, 425 |
| BspT107I | GGYRCC | 1 cut(s) | 150 |
| BsrDI | GCAATG | 1 cut(s) | 231 |
| BsrGI | TGTACA | 1 cut(s) | 81 |
| BsrI | ACTGG | 1 cut(s) | 354 |
| BssECI | CCNNGG | 2 cut(s) | 99, 297 |
| BssMI | GATC | 4 cut(s) | 330, 381, 417, 447 |
| BssNI | GRCGYC | 2 cut(s) | 43, 516 |
| BssT1I | CCWWGG | 2 cut(s) | 99, 297 |
| Bst2UI | CCWGG | 2 cut(s) | 589, 643 |
| Bst4CI | ACNGT | 2 cut(s) | 340, 698 |
| BstACI | GRCGYC | 2 cut(s) | 43, 516 |
| BstAUI | TGTACA | 1 cut(s) | 81 |
| BstBAI | YACGTR | 1 cut(s) | 659 |
| BstDSI | CCRYGG | 1 cut(s) | 99 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 52 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstFNI | CGCG | 1 cut(s) | 206 |
| BstHHI | GCGC | 1 cut(s) | 208 |
| BstKTI | GATC | 4 cut(s) | 333, 384, 420, 450 |
| BstMBI | GATC | 4 cut(s) | 330, 381, 417, 447 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 661 |
| BstNI | CCWGG | 2 cut(s) | 589, 643 |
| BstSCI | CCNGG | 2 cut(s) | 587, 641 |
| BstSFI | CTRYAG | 1 cut(s) | 527 |
| BstUI | CGCG | 1 cut(s) | 206 |
| BstV1I | GCAGC | 2 cut(s) | 477, 562 |
| BstV2I | GAAGAC | 1 cut(s) | 519 |
| BstX2I | RGATCY | 1 cut(s) | 417 |
| BstYI | RGATCY | 1 cut(s) | 417 |
| Bsu15I | ATCGAT | 1 cut(s) | 75 |
| BsuRI | GGCC | 2 cut(s) | 344, 395 |
| BsuTUI | ATCGAT | 1 cut(s) | 75 |
| BtgI | CCRYGG | 1 cut(s) | 99 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| BtsIMutI | CAGTG | 2 cut(s) | 347, 676 |
| BveI | ACCTGC | 2 cut(s) | 199, 605 |
| CfoI | GCGC | 1 cut(s) | 208 |
| Cfr13I | GGNCC | 1 cut(s) | 484 |
| ClaI | ATCGAT | 1 cut(s) | 75 |
| CseI | GACGC | 1 cut(s) | 32 |
| Csp6I | GTAC | 3 cut(s) | 82, 151, 699 |
| CviAII | CATG | 3 cut(s) | 100, 145, 506 |
| CviQI | GTAC | 3 cut(s) | 82, 151, 699 |
| DpnI | GATC | 4 cut(s) | 332, 383, 419, 449 |
| DpnII | GATC | 4 cut(s) | 330, 381, 417, 447 |
| EciI | GGCGGA | 1 cut(s) | 497 |
| Eco130I | CCWWGG | 2 cut(s) | 99, 297 |
| Eco32I | GATATC | 1 cut(s) | 374 |
| Eco47I | GGWCC | 1 cut(s) | 484 |
| Eco57I | CTGAAG | 2 cut(s) | 240, 413 |
| Eco72I | CACGTG | 1 cut(s) | 659 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 52 |
| EcoRII | CCWGG | 2 cut(s) | 587, 641 |
| EcoRV | GATATC | 1 cut(s) | 374 |
| EcoT14I | CCWWGG | 2 cut(s) | 99, 297 |
| ErhI | CCWWGG | 2 cut(s) | 99, 297 |
| FaeI | CATG | 3 cut(s) | 103, 148, 509 |
| FaiI | YATR | 9 cut(s) | 53, 101, 122, 146, 273, 365, 507, 635, 726 |
| FaqI | GGGAC | 3 cut(s) | 30, 103, 323 |
| FatI | CATG | 3 cut(s) | 99, 144, 505 |
| FbaI | TGATCA | 2 cut(s) | 330, 381 |
| Fnu4HI | GCNGC | 2 cut(s) | 466, 551 |
| FokI | GGATG | 1 cut(s) | 248 |
| Fsp4HI | GCNGC | 2 cut(s) | 466, 551 |
| FspBI | CTAG | 3 cut(s) | 254, 324, 443 |
| GlaI | GCGC | 1 cut(s) | 207 |
| GluI | GCNGC | 2 cut(s) | 466, 551 |
| GsuI | CTGGAG | 1 cut(s) | 371 |
| HaeIII | GGCC | 2 cut(s) | 344, 395 |
| HgaI | GACGC | 1 cut(s) | 32 |
| HhaI | GCGC | 1 cut(s) | 208 |
| Hin1I | GRCGYC | 2 cut(s) | 43, 516 |
| Hin1II | CATG | 3 cut(s) | 103, 148, 509 |
| Hin6I | GCGC | 1 cut(s) | 206 |
| HinP1I | GCGC | 1 cut(s) | 206 |
| HinfI | GANTC | 5 cut(s) | 8, 91, 197, 409, 599 |
| HphI | GGTGA | 2 cut(s) | 88, 125 |
| Hpy166II | GTNNAC | 1 cut(s) | 82 |
| Hpy188I | TCNGA | 5 cut(s) | 163, 220, 249, 269, 378 |
| Hpy188III | TCNNGA | 5 cut(s) | 137, 334, 385, 431, 622 |
| Hpy8I | GTNNAC | 1 cut(s) | 82 |
| HpyAV | CCTTC | 2 cut(s) | 382, 454 |
| HpyCH4III | ACNGT | 2 cut(s) | 340, 698 |
| HpyCH4IV | ACGT | 3 cut(s) | 312, 516, 658 |
| HpyCH4V | TGCA | 4 cut(s) | 62, 278, 614, 693 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 661 |
| HpySE526I | ACGT | 3 cut(s) | 312, 516, 658 |
| Hsp92I | GRCGYC | 2 cut(s) | 43, 516 |
| Hsp92II | CATG | 3 cut(s) | 103, 148, 509 |
| HspAI | GCGC | 1 cut(s) | 206 |
| KpnI | GGTACC | 1 cut(s) | 154 |
| Ksp22I | TGATCA | 2 cut(s) | 330, 381 |
| Kzo9I | GATC | 4 cut(s) | 330, 381, 417, 447 |
| LmnI | GCTCC | 1 cut(s) | 319 |
| Lsp1109I | GCAGC | 2 cut(s) | 477, 562 |
| LweI | GCATC | 1 cut(s) | 265 |
| MaeI | CTAG | 3 cut(s) | 254, 324, 443 |
| MaeII | ACGT | 3 cut(s) | 312, 516, 658 |
| MalI | GATC | 4 cut(s) | 332, 383, 419, 449 |
| MboI | GATC | 4 cut(s) | 330, 381, 417, 447 |
| MboII | GAAGA | 2 cut(s) | 524, 730 |
| MflI | RGATCY | 1 cut(s) | 417 |
| MluCI | AATT | 1 cut(s) | 239 |
| MlyI | GAGTC | 1 cut(s) | 85 |
| MmeI | TCCRAC | 1 cut(s) | 247 |
| MspR9I | CCNGG | 2 cut(s) | 589, 643 |
| MvaI | CCWGG | 2 cut(s) | 589, 643 |
| MvnI | CGCG | 1 cut(s) | 206 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 661 |
| NcoI | CCATGG | 1 cut(s) | 99 |
| NdeII | GATC | 4 cut(s) | 330, 381, 417, 447 |
| NlaIII | CATG | 3 cut(s) | 103, 148, 509 |
| NlaIV | GGNNCC | 4 cut(s) | 152, 288, 321, 419 |
| PfeI | GAWTC | 4 cut(s) | 8, 197, 409, 599 |
| PflFI | GACNNNGTC | 1 cut(s) | 263 |
| PkrI | GCNGC | 2 cut(s) | 467, 552 |
| PleI | GAGTC | 1 cut(s) | 85 |
| PmaCI | CACGTG | 1 cut(s) | 659 |
| PmlI | CACGTG | 1 cut(s) | 659 |
| PpsI | GAGTC | 1 cut(s) | 85 |
| Ppu21I | YACGTR | 1 cut(s) | 659 |
| Psp6I | CCWGG | 2 cut(s) | 587, 641 |
| PspCI | CACGTG | 1 cut(s) | 659 |
| PspGI | CCWGG | 2 cut(s) | 587, 641 |
| PspN4I | GGNNCC | 4 cut(s) | 152, 288, 321, 419 |
| PspPI | GGNCC | 1 cut(s) | 484 |
| PsuI | RGATCY | 1 cut(s) | 417 |
| PsyI | GACNNNGTC | 1 cut(s) | 263 |
| RsaI | GTAC | 3 cut(s) | 83, 152, 700 |
| RsaNI | GTAC | 3 cut(s) | 82, 151, 699 |
| SatI | GCNGC | 2 cut(s) | 466, 551 |
| Sau3AI | GATC | 4 cut(s) | 330, 381, 417, 447 |
| Sau96I | GGNCC | 1 cut(s) | 484 |
| SchI | GAGTC | 1 cut(s) | 85 |
| ScrFI | CCNGG | 2 cut(s) | 589, 643 |
| SfaNI | GCATC | 1 cut(s) | 265 |
| SfcI | CTRYAG | 1 cut(s) | 527 |
| SinI | GGWCC | 1 cut(s) | 484 |
| Sse9I | AATT | 1 cut(s) | 239 |
| SsiI | CCGC | 1 cut(s) | 482 |
| SspMI | CTAG | 3 cut(s) | 254, 324, 443 |
| StyD4I | CCNGG | 2 cut(s) | 587, 641 |
| StyI | CCWWGG | 2 cut(s) | 99, 297 |
| TaaI | ACNGT | 2 cut(s) | 340, 698 |
| TaiI | ACGT | 3 cut(s) | 315, 519, 661 |
| TaqI | TCGA | 2 cut(s) | 75, 412 |
| TasI | AATT | 1 cut(s) | 239 |
| TatI | WGTACW | 1 cut(s) | 81 |
| TfiI | GAWTC | 4 cut(s) | 8, 197, 409, 599 |
| TscAI | CASTG | 2 cut(s) | 354, 676 |
| TseI | GCWGC | 2 cut(s) | 465, 550 |
| TspDTI | ATGAA | 1 cut(s) | 252 |
| TspRI | CASTG | 2 cut(s) | 354, 676 |
| Tth111I | GACNNNGTC | 1 cut(s) | 263 |
| VpaK11BI | GGWCC | 1 cut(s) | 484 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 52 |
| XspI | CTAG | 3 cut(s) | 254, 324, 443 |
| ZraI | GACGTC | 1 cut(s) | 517 |