transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 177 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 563 |
| AciI | CCGC | 1 cut(s) | 121 |
| AcoI | YGGCCR | 2 cut(s) | 30, 58 |
| AcsI | RAATTY | 3 cut(s) | 339, 361, 408 |
| AcuI | CTGAAG | 1 cut(s) | 302 |
| AfaI | GTAC | 1 cut(s) | 169 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 563 |
| AgsI | TTSAA | 5 cut(s) | 68, 325, 428, 545, 598 |
| AjnI | CCWGG | 2 cut(s) | 60, 475 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 590, 622 |
| AluBI | AGCT | 3 cut(s) | 173, 224, 484 |
| AluI | AGCT | 3 cut(s) | 173, 224, 484 |
| AoxI | GGCC | 2 cut(s) | 30, 58 |
| ApeKI | GCWGC | 1 cut(s) | 589 |
| ApoI | RAATTY | 3 cut(s) | 339, 361, 408 |
| AseI | ATTAAT | 1 cut(s) | 209 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 339, 392 |
| AspS9I | GGNCC | 2 cut(s) | 503, 553 |
| AsuHPI | GGTGA | 1 cut(s) | 35 |
| AvaII | GGWCC | 2 cut(s) | 503, 553 |
| BalI | TGGCCA | 2 cut(s) | 32, 60 |
| BbvI | GCAGC | 1 cut(s) | 601 |
| BccI | CCATC | 2 cut(s) | 489, 644 |
| BciT130I | CCWGG | 2 cut(s) | 62, 477 |
| BfaI | CTAG | 6 cut(s) | 366, 432, 459, 492, 623, 644 |
| BfmI | CTRYAG | 2 cut(s) | 202, 237 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 263 |
| BisI | GCNGC | 1 cut(s) | 590 |
| BlsI | GCNGC | 1 cut(s) | 591 |
| Bme1390I | CCNGG | 2 cut(s) | 62, 477 |
| Bme18I | GGWCC | 2 cut(s) | 503, 553 |
| BmgT120I | GGNCC | 2 cut(s) | 503, 553 |
| BmiI | GGNNCC | 1 cut(s) | 555 |
| BmrFI | CCNGG | 2 cut(s) | 62, 477 |
| BmsI | GCATC | 2 cut(s) | 139, 286 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 563 |
| Bse1I | ACTGG | 1 cut(s) | 300 |
| BseBI | CCWGG | 2 cut(s) | 62, 477 |
| BseGI | GGATG | 1 cut(s) | 634 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 563 |
| BseNI | ACTGG | 1 cut(s) | 300 |
| BseXI | GCAGC | 1 cut(s) | 601 |
| BshFI | GGCC | 2 cut(s) | 32, 60 |
| BslFI | GGGAC | 1 cut(s) | 181 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 563 |
| BsmFI | GGGAC | 1 cut(s) | 181 |
| BsnI | GGCC | 2 cut(s) | 32, 60 |
| Bsp143I | GATC | 1 cut(s) | 267 |
| BspACI | CCGC | 1 cut(s) | 121 |
| BspANI | GGCC | 2 cut(s) | 32, 60 |
| BspLI | GGNNCC | 1 cut(s) | 555 |
| BsrI | ACTGG | 1 cut(s) | 300 |
| BssMI | GATC | 1 cut(s) | 267 |
| Bst2UI | CCWGG | 2 cut(s) | 62, 477 |
| Bst4CI | ACNGT | 2 cut(s) | 109, 167 |
| BstDEI | CTNAG | 1 cut(s) | 308 |
| BstF5I | GGATG | 1 cut(s) | 634 |
| BstKTI | GATC | 1 cut(s) | 270 |
| BstMBI | GATC | 1 cut(s) | 267 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 158, 263 |
| BstNI | CCWGG | 2 cut(s) | 62, 477 |
| BstSCI | CCNGG | 2 cut(s) | 60, 475 |
| BstSFI | CTRYAG | 2 cut(s) | 202, 237 |
| BstV1I | GCAGC | 1 cut(s) | 601 |
| BsuRI | GGCC | 2 cut(s) | 32, 60 |
| BtsCI | GGATG | 1 cut(s) | 634 |
| BtsIMutI | CAGTG | 1 cut(s) | 114 |
| Cfr13I | GGNCC | 2 cut(s) | 503, 553 |
| Csp6I | GTAC | 1 cut(s) | 168 |
| CviAII | CATG | 1 cut(s) | 398 |
| CviJI | RGCY | 7 cut(s) | 32, 60, 161, 173, 224, 257, 484 |
| CviKI_1 | RGCY | 7 cut(s) | 32, 60, 161, 173, 224, 257, 484 |
| CviQI | GTAC | 1 cut(s) | 168 |
| DdeI | CTNAG | 1 cut(s) | 308 |
| DpnI | GATC | 1 cut(s) | 269 |
| DpnII | GATC | 1 cut(s) | 267 |
| DraI | TTTAAA | 1 cut(s) | 577 |
| EaeI | YGGCCR | 2 cut(s) | 30, 58 |
| Eco47I | GGWCC | 2 cut(s) | 503, 553 |
| Eco57I | CTGAAG | 1 cut(s) | 302 |
| EcoO109I | RGGNCCY | 1 cut(s) | 553 |
| EcoRII | CCWGG | 2 cut(s) | 60, 475 |
| FaeI | CATG | 1 cut(s) | 401 |
| FaqI | GGGAC | 1 cut(s) | 181 |
| FatI | CATG | 1 cut(s) | 397 |
| FauNDI | CATATG | 1 cut(s) | 355 |
| Fnu4HI | GCNGC | 1 cut(s) | 590 |
| FokI | GGATG | 1 cut(s) | 641 |
| Fsp4HI | GCNGC | 1 cut(s) | 590 |
| FspBI | CTAG | 6 cut(s) | 366, 432, 459, 492, 623, 644 |
| GluI | GCNGC | 1 cut(s) | 590 |
| HaeIII | GGCC | 2 cut(s) | 32, 60 |
| Hin1II | CATG | 1 cut(s) | 401 |
| HindIII | AAGCTT | 2 cut(s) | 222, 482 |
| HinfI | GANTC | 1 cut(s) | 649 |
| HphI | GGTGA | 1 cut(s) | 35 |
| Hpy166II | GTNNAC | 1 cut(s) | 112 |
| Hpy188I | TCNGA | 1 cut(s) | 345 |
| Hpy188III | TCNNGA | 5 cut(s) | 271, 459, 492, 623, 644 |
| Hpy8I | GTNNAC | 1 cut(s) | 112 |
| HpyCH4III | ACNGT | 2 cut(s) | 109, 167 |
| HpyCH4V | TGCA | 3 cut(s) | 152, 466, 662 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 158, 263 |
| HpyF3I | CTNAG | 1 cut(s) | 308 |
| Hsp92II | CATG | 1 cut(s) | 401 |
| Kzo9I | GATC | 1 cut(s) | 267 |
| LpnPI | CCDG | 7 cut(s) | 47, 74, 249, 313, 462, 486, 489 |
| Lsp1109I | GCAGC | 1 cut(s) | 601 |
| LweI | GCATC | 2 cut(s) | 139, 286 |
| MaeI | CTAG | 6 cut(s) | 366, 432, 459, 492, 623, 644 |
| MaeIII | GTNAC | 2 cut(s) | 16, 227 |
| MalI | GATC | 1 cut(s) | 269 |
| MboI | GATC | 1 cut(s) | 267 |
| MboII | GAAGA | 2 cut(s) | 16, 347 |
| MfeI | CAATTG | 1 cut(s) | 186 |
| MlsI | TGGCCA | 2 cut(s) | 32, 60 |
| MluNI | TGGCCA | 2 cut(s) | 32, 60 |
| MnlI | CCTC | 2 cut(s) | 544, 619 |
| Mox20I | TGGCCA | 2 cut(s) | 32, 60 |
| MroXI | GAANNNNTTC | 2 cut(s) | 339, 392 |
| MscI | TGGCCA | 2 cut(s) | 32, 60 |
| MseI | TTAA | 4 cut(s) | 209, 279, 516, 576 |
| Msp20I | TGGCCA | 2 cut(s) | 32, 60 |
| MspR9I | CCNGG | 2 cut(s) | 62, 477 |
| MunI | CAATTG | 1 cut(s) | 186 |
| MvaI | CCWGG | 2 cut(s) | 62, 477 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 158, 263 |
| NdeI | CATATG | 1 cut(s) | 355 |
| NdeII | GATC | 1 cut(s) | 267 |
| NlaIII | CATG | 1 cut(s) | 401 |
| NlaIV | GGNNCC | 1 cut(s) | 555 |
| NmuCI | GTSAC | 1 cut(s) | 227 |
| PdmI | GAANNNNTTC | 2 cut(s) | 339, 392 |
| PfeI | GAWTC | 1 cut(s) | 649 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 563 |
| PkrI | GCNGC | 1 cut(s) | 591 |
| PpuMI | RGGWCCY | 1 cut(s) | 553 |
| PshBI | ATTAAT | 1 cut(s) | 209 |
| PsiI | TTATAA | 1 cut(s) | 177 |
| Psp5II | RGGWCCY | 1 cut(s) | 553 |
| Psp6I | CCWGG | 2 cut(s) | 60, 475 |
| PspGI | CCWGG | 2 cut(s) | 60, 475 |
| PspN4I | GGNNCC | 1 cut(s) | 555 |
| PspPI | GGNCC | 2 cut(s) | 503, 553 |
| PspPPI | RGGWCCY | 1 cut(s) | 553 |
| RsaI | GTAC | 1 cut(s) | 169 |
| RsaNI | GTAC | 1 cut(s) | 168 |
| SaqAI | TTAA | 4 cut(s) | 209, 279, 516, 576 |
| SatI | GCNGC | 1 cut(s) | 590 |
| Sau3AI | GATC | 1 cut(s) | 267 |
| Sau96I | GGNCC | 2 cut(s) | 503, 553 |
| ScrFI | CCNGG | 2 cut(s) | 62, 477 |
| SetI | ASST | 8 cut(s) | 66, 175, 226, 238, 425, 433, 486, 505 |
| SfaNI | GCATC | 2 cut(s) | 139, 286 |
| SfcI | CTRYAG | 2 cut(s) | 202, 237 |
| SinI | GGWCC | 2 cut(s) | 503, 553 |
| SsiI | CCGC | 1 cut(s) | 121 |
| SspI | AATATT | 1 cut(s) | 616 |
| SspMI | CTAG | 6 cut(s) | 366, 432, 459, 492, 623, 644 |
| StyD4I | CCNGG | 2 cut(s) | 60, 475 |
| TaaI | ACNGT | 2 cut(s) | 109, 167 |
| TfiI | GAWTC | 1 cut(s) | 649 |
| Tru1I | TTAA | 4 cut(s) | 209, 279, 516, 576 |
| Tru9I | TTAA | 4 cut(s) | 209, 279, 516, 576 |
| TscAI | CASTG | 1 cut(s) | 114 |
| TseFI | GTSAC | 1 cut(s) | 227 |
| TseI | GCWGC | 1 cut(s) | 589 |
| Tsp45I | GTSAC | 1 cut(s) | 227 |
| TspDTI | ATGAA | 6 cut(s) | 17, 342, 363, 372, 401, 645 |
| TspRI | CASTG | 1 cut(s) | 114 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 563 |
| VpaK11BI | GGWCC | 2 cut(s) | 503, 553 |
| VspI | ATTAAT | 1 cut(s) | 209 |
| XapI | RAATTY | 3 cut(s) | 339, 361, 408 |
| XbaI | TCTAGA | 4 cut(s) | 458, 491, 622, 643 |
| XmnI | GAANNNNTTC | 2 cut(s) | 339, 392 |
| XspI | CTAG | 6 cut(s) | 366, 432, 459, 492, 623, 644 |