Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 497, 607 |
| AccI | GTMKAC | 1 cut(s) | 288 |
| AclWI | GGATC | 3 cut(s) | 195, 599, 674 |
| AcsI | RAATTY | 5 cut(s) | 57, 74, 403, 576, 794 |
| AcyI | GRCGYC | 2 cut(s) | 45, 487 |
| AfaI | GTAC | 3 cut(s) | 214, 511, 636 |
| AfeI | AGCGCT | 1 cut(s) | 151 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 102 |
| AgsI | TTSAA | 9 cut(s) | 13, 82, 161, 665, 689, 731, 757, 800, 865 |
| AluBI | AGCT | 6 cut(s) | 88, 181, 198, 467, 743, 826 |
| AluI | AGCT | 6 cut(s) | 88, 181, 198, 467, 743, 826 |
| Alw21I | GWGCWC | 2 cut(s) | 90, 770 |
| Alw26I | GTCTC | 1 cut(s) | 812 |
| AlwI | GGATC | 3 cut(s) | 195, 599, 674 |
| Aor51HI | AGCGCT | 1 cut(s) | 151 |
| ApeKI | GCWGC | 2 cut(s) | 195, 761 |
| ApoI | RAATTY | 5 cut(s) | 57, 74, 403, 576, 794 |
| AseI | ATTAAT | 1 cut(s) | 27 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 656 |
| AspLEI | GCGC | 1 cut(s) | 152 |
| AspS9I | GGNCC | 2 cut(s) | 241, 308 |
| AvaII | GGWCC | 2 cut(s) | 241, 308 |
| BaeGI | GKGCMC | 1 cut(s) | 834 |
| BanII | GRGCYC | 1 cut(s) | 90 |
| Bbv12I | GWGCWC | 2 cut(s) | 90, 770 |
| BbvCI | CCTCAGC | 1 cut(s) | 744 |
| BbvI | GCAGC | 2 cut(s) | 207, 773 |
| BccI | CCATC | 1 cut(s) | 56 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 333, 367 |
| BciVI | GTATCC | 1 cut(s) | 372 |
| BcoDI | GTCTC | 1 cut(s) | 812 |
| BfaI | CTAG | 1 cut(s) | 389 |
| BfmI | CTRYAG | 2 cut(s) | 504, 600 |
| BfoI | RGCGCY | 1 cut(s) | 153 |
| BfuAI | ACCTGC | 2 cut(s) | 497, 607 |
| BfuI | GTATCC | 1 cut(s) | 372 |
| BisI | GCNGC | 2 cut(s) | 196, 762 |
| BlsI | GCNGC | 2 cut(s) | 197, 763 |
| Bme18I | GGWCC | 2 cut(s) | 241, 308 |
| BmgT120I | GGNCC | 2 cut(s) | 241, 308 |
| BmsI | GCATC | 2 cut(s) | 336, 574 |
| Bpu10I | CCTNAGC | 1 cut(s) | 744 |
| BpuEI | CTTGAG | 1 cut(s) | 167 |
| BsaHI | GRCGYC | 2 cut(s) | 45, 487 |
| BsaI | GGTCTC | 1 cut(s) | 812 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 102 |
| Bse3DI | GCAATG | 1 cut(s) | 35 |
| BseGI | GGATG | 2 cut(s) | 388, 634 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 102 |
| BseMI | GCAATG | 1 cut(s) | 35 |
| BseMII | CTCAG | 1 cut(s) | 735 |
| BseSI | GKGCMC | 1 cut(s) | 834 |
| BseXI | GCAGC | 2 cut(s) | 207, 773 |
| BsgI | GTGCAG | 1 cut(s) | 41 |
| BsiHKAI | GWGCWC | 2 cut(s) | 90, 770 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 102 |
| BsmAI | GTCTC | 1 cut(s) | 812 |
| BsmI | GAATGC | 1 cut(s) | 763 |
| Bso31I | GGTCTC | 1 cut(s) | 812 |
| Bsp1286I | GDGCHC | 3 cut(s) | 90, 770, 834 |
| Bsp143I | GATC | 4 cut(s) | 187, 453, 604, 679 |
| BspCNI | CTCAG | 1 cut(s) | 736 |
| BspMAI | CTGCAG | 2 cut(s) | 508, 604 |
| BspMI | ACCTGC | 2 cut(s) | 497, 607 |
| BspPI | GGATC | 3 cut(s) | 195, 599, 674 |
| BspQI | GCTCTTC | 1 cut(s) | 474 |
| BspTNI | GGTCTC | 1 cut(s) | 812 |
| BsrDI | GCAATG | 1 cut(s) | 35 |
| BssMI | GATC | 4 cut(s) | 187, 453, 604, 679 |
| BssNI | GRCGYC | 2 cut(s) | 45, 487 |
| Bst4CI | ACNGT | 3 cut(s) | 350, 550, 813 |
| Bst6I | CTCTTC | 2 cut(s) | 474, 876 |
| BstACI | GRCGYC | 2 cut(s) | 45, 487 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 758 |
| BstC8I | GCNNGC | 1 cut(s) | 766 |
| BstDEI | CTNAG | 1 cut(s) | 744 |
| BstF5I | GGATG | 2 cut(s) | 388, 634 |
| BstH2I | RGCGCY | 1 cut(s) | 153 |
| BstHHI | GCGC | 1 cut(s) | 152 |
| BstKTI | GATC | 4 cut(s) | 190, 456, 607, 682 |
| BstMAI | GTCTC | 1 cut(s) | 812 |
| BstMBI | GATC | 4 cut(s) | 187, 453, 604, 679 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 178, 749, 758 |
| BstNSI | RCATGY | 1 cut(s) | 672 |
| BstSFI | CTRYAG | 2 cut(s) | 504, 600 |
| BstSLI | GKGCMC | 1 cut(s) | 834 |
| BstV1I | GCAGC | 2 cut(s) | 207, 773 |
| BstX2I | RGATCY | 3 cut(s) | 187, 604, 679 |
| BstYI | RGATCY | 3 cut(s) | 187, 604, 679 |
| BsuI | GTATCC | 1 cut(s) | 372 |
| BtsCI | GGATG | 2 cut(s) | 388, 634 |
| BtsIMutI | CAGTG | 1 cut(s) | 555 |
| BveI | ACCTGC | 2 cut(s) | 497, 607 |
| Cac8I | GCNNGC | 1 cut(s) | 766 |
| CfoI | GCGC | 1 cut(s) | 152 |
| Cfr13I | GGNCC | 2 cut(s) | 241, 308 |
| CseI | GACGC | 2 cut(s) | 53, 476 |
| Csp6I | GTAC | 3 cut(s) | 213, 510, 635 |
| CviAII | CATG | 7 cut(s) | 274, 439, 496, 554, 570, 669, 707 |
| CviJI | RGCY | 7 cut(s) | 88, 181, 198, 467, 500, 743, 826 |
| CviKI_1 | RGCY | 7 cut(s) | 88, 181, 198, 467, 500, 743, 826 |
| CviQI | GTAC | 3 cut(s) | 213, 510, 635 |
| DdeI | CTNAG | 1 cut(s) | 744 |
| DpnI | GATC | 4 cut(s) | 189, 455, 606, 681 |
| DpnII | GATC | 4 cut(s) | 187, 453, 604, 679 |
| Eam1104I | CTCTTC | 2 cut(s) | 474, 876 |
| EarI | CTCTTC | 2 cut(s) | 474, 876 |
| Ecl136II | GAGCTC | 1 cut(s) | 88 |
| Eco24I | GRGCYC | 1 cut(s) | 90 |
| Eco31I | GGTCTC | 1 cut(s) | 812 |
| Eco47I | GGWCC | 2 cut(s) | 241, 308 |
| Eco47III | AGCGCT | 1 cut(s) | 151 |
| Eco53kI | GAGCTC | 1 cut(s) | 88 |
| EcoICRI | GAGCTC | 1 cut(s) | 88 |
| EcoO109I | RGGNCCY | 1 cut(s) | 241 |
| EcoT22I | ATGCAT | 1 cut(s) | 589 |
| EcoT38I | GRGCYC | 1 cut(s) | 90 |
| FaeI | CATG | 7 cut(s) | 277, 442, 499, 557, 573, 672, 710 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 669, 701 |
| FatI | CATG | 7 cut(s) | 273, 438, 495, 553, 569, 668, 706 |
| FauNDI | CATATG | 1 cut(s) | 67 |
| FblI | GTMKAC | 1 cut(s) | 288 |
| Fnu4HI | GCNGC | 2 cut(s) | 196, 762 |
| FokI | GGATG | 2 cut(s) | 395, 641 |
| FriOI | GRGCYC | 1 cut(s) | 90 |
| Fsp4HI | GCNGC | 2 cut(s) | 196, 762 |
| FspBI | CTAG | 1 cut(s) | 389 |
| GlaI | GCGC | 1 cut(s) | 151 |
| GluI | GCNGC | 2 cut(s) | 196, 762 |
| HaeII | RGCGCY | 1 cut(s) | 153 |
| HgaI | GACGC | 2 cut(s) | 53, 476 |
| HhaI | GCGC | 1 cut(s) | 152 |
| Hin1I | GRCGYC | 2 cut(s) | 45, 487 |
| Hin1II | CATG | 7 cut(s) | 277, 442, 499, 557, 573, 672, 710 |
| Hin6I | GCGC | 1 cut(s) | 150 |
| HinP1I | GCGC | 1 cut(s) | 150 |
| HincII | GTYRAC | 2 cut(s) | 540, 844 |
| HindII | GTYRAC | 2 cut(s) | 540, 844 |
| HindIII | AAGCTT | 1 cut(s) | 824 |
| HinfI | GANTC | 2 cut(s) | 268, 800 |
| Hpy166II | GTNNAC | 4 cut(s) | 213, 289, 540, 844 |
| Hpy188I | TCNGA | 4 cut(s) | 139, 458, 792, 817 |
| Hpy188III | TCNNGA | 2 cut(s) | 13, 686 |
| Hpy8I | GTNNAC | 4 cut(s) | 213, 289, 540, 844 |
| Hpy99I | CGWCG | 1 cut(s) | 47 |
| HpyAV | CCTTC | 5 cut(s) | 10, 72, 76, 232, 524 |
| HpyCH4III | ACNGT | 3 cut(s) | 350, 550, 813 |
| HpyCH4V | TGCA | 8 cut(s) | 22, 344, 506, 553, 587, 602, 761, 808 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 178, 749, 758 |
| HpyF3I | CTNAG | 1 cut(s) | 744 |
| Hsp92I | GRCGYC | 2 cut(s) | 45, 487 |
| Hsp92II | CATG | 7 cut(s) | 277, 442, 499, 557, 573, 672, 710 |
| HspAI | GCGC | 1 cut(s) | 150 |
| Kzo9I | GATC | 4 cut(s) | 187, 453, 604, 679 |
| LguI | GCTCTTC | 1 cut(s) | 474 |
| LmnI | GCTCC | 2 cut(s) | 4, 85 |
| LpnPI | CCDG | 3 cut(s) | 429, 492, 612 |
| Lsp1109I | GCAGC | 2 cut(s) | 207, 773 |
| LweI | GCATC | 2 cut(s) | 336, 574 |
| MaeI | CTAG | 1 cut(s) | 389 |
| MalI | GATC | 4 cut(s) | 189, 455, 606, 681 |
| MboI | GATC | 4 cut(s) | 187, 453, 604, 679 |
| MboII | GAAGA | 4 cut(s) | 404, 461, 661, 863 |
| MflI | RGATCY | 3 cut(s) | 187, 604, 679 |
| MhlI | GDGCHC | 3 cut(s) | 90, 770, 834 |
| MluCI | AATT | 8 cut(s) | 57, 74, 167, 403, 477, 516, 576, 794 |
| MmeI | TCCRAC | 2 cut(s) | 117, 717 |
| Mph1103I | ATGCAT | 1 cut(s) | 589 |
| MroXI | GAANNNNTTC | 1 cut(s) | 656 |
| MseI | TTAA | 5 cut(s) | 27, 393, 476, 525, 590 |
| MslI | CAYNNNNRTG | 1 cut(s) | 781 |
| Mva1269I | GAATGC | 1 cut(s) | 763 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 178, 749, 758 |
| NdeI | CATATG | 1 cut(s) | 67 |
| NdeII | GATC | 4 cut(s) | 187, 453, 604, 679 |
| NlaIII | CATG | 7 cut(s) | 277, 442, 499, 557, 573, 672, 710 |
| NsiI | ATGCAT | 1 cut(s) | 589 |
| NspI | RCATGY | 1 cut(s) | 672 |
| PciSI | GCTCTTC | 1 cut(s) | 474 |
| PctI | GAATGC | 1 cut(s) | 763 |
| PdmI | GAANNNNTTC | 1 cut(s) | 656 |
| PfeI | GAWTC | 2 cut(s) | 268, 800 |
| PkrI | GCNGC | 2 cut(s) | 197, 763 |
| PpuMI | RGGWCCY | 1 cut(s) | 241 |
| PshBI | ATTAAT | 1 cut(s) | 27 |
| Psp124BI | GAGCTC | 1 cut(s) | 90 |
| Psp5II | RGGWCCY | 1 cut(s) | 241 |
| PspPI | GGNCC | 2 cut(s) | 241, 308 |
| PspPPI | RGGWCCY | 1 cut(s) | 241 |
| PstI | CTGCAG | 2 cut(s) | 508, 604 |
| PsuI | RGATCY | 3 cut(s) | 187, 604, 679 |
| RsaI | GTAC | 3 cut(s) | 214, 511, 636 |
| RsaNI | GTAC | 3 cut(s) | 213, 510, 635 |
| RseI | CAYNNNNRTG | 1 cut(s) | 781 |
| SacI | GAGCTC | 1 cut(s) | 90 |
| SapI | GCTCTTC | 1 cut(s) | 474 |
| SaqAI | TTAA | 5 cut(s) | 27, 393, 476, 525, 590 |
| SatI | GCNGC | 2 cut(s) | 196, 762 |
| Sau3AI | GATC | 4 cut(s) | 187, 453, 604, 679 |
| Sau96I | GGNCC | 2 cut(s) | 241, 308 |
| SduI | GDGCHC | 3 cut(s) | 90, 770, 834 |
| SfaNI | GCATC | 2 cut(s) | 336, 574 |
| SfcI | CTRYAG | 2 cut(s) | 504, 600 |
| SinI | GGWCC | 2 cut(s) | 241, 308 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 781 |
| SmlI | CTYRAG | 1 cut(s) | 182 |
| SmoI | CTYRAG | 1 cut(s) | 182 |
| Sse9I | AATT | 8 cut(s) | 57, 74, 167, 403, 477, 516, 576, 794 |
| SspMI | CTAG | 1 cut(s) | 389 |
| SstI | GAGCTC | 1 cut(s) | 90 |
| TaaI | ACNGT | 3 cut(s) | 350, 550, 813 |
| TaqI | TCGA | 1 cut(s) | 42 |
| TasI | AATT | 8 cut(s) | 57, 74, 167, 403, 477, 516, 576, 794 |
| TfiI | GAWTC | 2 cut(s) | 268, 800 |
| Tru1I | TTAA | 5 cut(s) | 27, 393, 476, 525, 590 |
| Tru9I | TTAA | 5 cut(s) | 27, 393, 476, 525, 590 |
| TscAI | CASTG | 1 cut(s) | 555 |
| TseI | GCWGC | 2 cut(s) | 195, 761 |
| TspDTI | ATGAA | 4 cut(s) | 54, 135, 484, 649 |
| TspRI | CASTG | 1 cut(s) | 555 |
| VpaK11BI | GGWCC | 2 cut(s) | 241, 308 |
| VspI | ATTAAT | 1 cut(s) | 27 |
| XapI | RAATTY | 5 cut(s) | 57, 74, 403, 576, 794 |
| XceI | RCATGY | 1 cut(s) | 672 |
| XmiI | GTMKAC | 1 cut(s) | 288 |
| XmnI | GAANNNNTTC | 1 cut(s) | 656 |
| XspI | CTAG | 1 cut(s) | 389 |
| Zsp2I | ATGCAT | 1 cut(s) | 589 |