transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1072 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1220 |
| Acc36I | ACCTGC | 1 cut(s) | 1072 |
| AccB1I | GGYRCC | 3 cut(s) | 556, 877, 1007 |
| AciI | CCGC | 2 cut(s) | 321, 502 |
| AcsI | RAATTY | 4 cut(s) | 59, 82, 481, 757 |
| AcyI | GRCGYC | 1 cut(s) | 878 |
| AfaI | GTAC | 2 cut(s) | 326, 1208 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 140, 262, 321, 792, 1004, 1223 |
| AflII | CTTAAG | 1 cut(s) | 1124 |
| AflIII | ACRYGT | 1 cut(s) | 305 |
| AgsI | TTSAA | 6 cut(s) | 282, 361, 747, 757, 941, 1187 |
| AluBI | AGCT | 7 cut(s) | 181, 221, 299, 530, 971, 1154, 1176 |
| AluI | AGCT | 7 cut(s) | 181, 221, 299, 530, 971, 1154, 1176 |
| Alw21I | GWGCWC | 2 cut(s) | 1089, 1178 |
| AoxI | GGCC | 1 cut(s) | 649 |
| ApeKI | GCWGC | 1 cut(s) | 386 |
| ApoI | RAATTY | 4 cut(s) | 59, 82, 481, 757 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 377 |
| AspLEI | GCGC | 2 cut(s) | 386, 880 |
| AspS9I | GGNCC | 1 cut(s) | 1213 |
| AsuHPI | GGTGA | 3 cut(s) | 169, 683, 1031 |
| AsuII | TTCGAA | 1 cut(s) | 629 |
| AvaII | GGWCC | 1 cut(s) | 1213 |
| BaeGI | GKGCMC | 1 cut(s) | 1012 |
| BanI | GGYRCC | 3 cut(s) | 556, 877, 1007 |
| BanII | GRGCYC | 1 cut(s) | 1178 |
| Bbv12I | GWGCWC | 2 cut(s) | 1089, 1178 |
| BbvI | GCAGC | 1 cut(s) | 373 |
| BccI | CCATC | 1 cut(s) | 863 |
| BfaI | CTAG | 1 cut(s) | 696 |
| BfmI | CTRYAG | 1 cut(s) | 933 |
| BfoI | RGCGCY | 2 cut(s) | 387, 881 |
| BfrI | CTTAAG | 1 cut(s) | 1124 |
| BfuAI | ACCTGC | 1 cut(s) | 1072 |
| BglII | AGATCT | 1 cut(s) | 1023 |
| BisI | GCNGC | 1 cut(s) | 387 |
| BlsI | GCNGC | 1 cut(s) | 388 |
| Bme18I | GGWCC | 1 cut(s) | 1213 |
| BmgT120I | GGNCC | 1 cut(s) | 1213 |
| BmiI | GGNNCC | 5 cut(s) | 476, 558, 879, 1009, 1215 |
| BmrI | ACTGGG | 1 cut(s) | 1006 |
| BmsI | GCATC | 3 cut(s) | 816, 835, 1060 |
| BmuI | ACTGGG | 1 cut(s) | 1006 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 254, 286 |
| Bpu10I | CCTNAGC | 1 cut(s) | 342 |
| Bpu14I | TTCGAA | 1 cut(s) | 629 |
| BpuEI | CTTGAG | 1 cut(s) | 441 |
| BsaHI | GRCGYC | 1 cut(s) | 878 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 140, 262, 321, 792, 1004, 1223 |
| Bse1I | ACTGG | 4 cut(s) | 256, 619, 652, 1012 |
| Bse3DI | GCAATG | 1 cut(s) | 98 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 140, 262, 321, 792, 1004, 1223 |
| BseMI | GCAATG | 1 cut(s) | 98 |
| BseMII | CTCAG | 6 cut(s) | 101, 252, 333, 387, 548, 995 |
| BseNI | ACTGG | 4 cut(s) | 256, 619, 652, 1012 |
| BseRI | GAGGAG | 3 cut(s) | 36, 156, 522 |
| BseSI | GKGCMC | 1 cut(s) | 1012 |
| BseXI | GCAGC | 1 cut(s) | 373 |
| BseYI | CCCAGC | 1 cut(s) | 561 |
| BshFI | GGCC | 1 cut(s) | 651 |
| BshNI | GGYRCC | 3 cut(s) | 556, 877, 1007 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1089, 1178 |
| BslFI | GGGAC | 2 cut(s) | 896, 947 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 140, 262, 321, 792, 1004, 1223 |
| BsmFI | GGGAC | 2 cut(s) | 896, 947 |
| BsmI | GAATGC | 1 cut(s) | 292 |
| BsnI | GGCC | 1 cut(s) | 651 |
| Bsp119I | TTCGAA | 1 cut(s) | 629 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1012, 1089, 1178 |
| Bsp143I | GATC | 1 cut(s) | 1023 |
| BspACI | CCGC | 2 cut(s) | 321, 502 |
| BspANI | GGCC | 1 cut(s) | 651 |
| BspCNI | CTCAG | 6 cut(s) | 100, 253, 334, 388, 547, 994 |
| BspLI | GGNNCC | 5 cut(s) | 476, 558, 879, 1009, 1215 |
| BspMI | ACCTGC | 1 cut(s) | 1072 |
| BspT104I | TTCGAA | 1 cut(s) | 629 |
| BspT107I | GGYRCC | 3 cut(s) | 556, 877, 1007 |
| BspTI | CTTAAG | 1 cut(s) | 1124 |
| BsrDI | GCAATG | 1 cut(s) | 98 |
| BsrI | ACTGG | 4 cut(s) | 256, 619, 652, 1012 |
| BssMI | GATC | 1 cut(s) | 1023 |
| BssNI | GRCGYC | 1 cut(s) | 878 |
| Bst4CI | ACNGT | 1 cut(s) | 664 |
| Bst6I | CTCTTC | 2 cut(s) | 892, 907 |
| BstACI | GRCGYC | 1 cut(s) | 878 |
| BstAFI | CTTAAG | 1 cut(s) | 1124 |
| BstBI | TTCGAA | 1 cut(s) | 629 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1002 |
| BstH2I | RGCGCY | 2 cut(s) | 387, 881 |
| BstHHI | GCGC | 2 cut(s) | 386, 880 |
| BstKTI | GATC | 1 cut(s) | 1026 |
| BstMBI | GATC | 1 cut(s) | 1023 |
| BstNSI | RCATGY | 1 cut(s) | 309 |
| BstSFI | CTRYAG | 1 cut(s) | 933 |
| BstSLI | GKGCMC | 1 cut(s) | 1012 |
| BstV1I | GCAGC | 1 cut(s) | 373 |
| BstX2I | RGATCY | 1 cut(s) | 1023 |
| BstYI | RGATCY | 1 cut(s) | 1023 |
| BsuRI | GGCC | 1 cut(s) | 651 |
| BveI | ACCTGC | 1 cut(s) | 1072 |
| CfoI | GCGC | 2 cut(s) | 386, 880 |
| Cfr13I | GGNCC | 1 cut(s) | 1213 |
| Csp6I | GTAC | 2 cut(s) | 325, 1207 |
| CviAII | CATG | 5 cut(s) | 235, 306, 316, 604, 764 |
| CviQI | GTAC | 2 cut(s) | 325, 1207 |
| DinI | GGCGCC | 1 cut(s) | 879 |
| DpnI | GATC | 1 cut(s) | 1025 |
| DpnII | GATC | 1 cut(s) | 1023 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1220 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1220 |
| Eam1104I | CTCTTC | 2 cut(s) | 892, 907 |
| EarI | CTCTTC | 2 cut(s) | 892, 907 |
| EciI | GGCGGA | 1 cut(s) | 491 |
| Ecl136II | GAGCTC | 1 cut(s) | 1176 |
| Eco24I | GRGCYC | 1 cut(s) | 1178 |
| Eco47I | GGWCC | 1 cut(s) | 1213 |
| Eco53kI | GAGCTC | 1 cut(s) | 1176 |
| EcoICRI | GAGCTC | 1 cut(s) | 1176 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1002 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1213 |
| EcoRI | GAATTC | 1 cut(s) | 757 |
| EcoT22I | ATGCAT | 1 cut(s) | 294 |
| EcoT38I | GRGCYC | 1 cut(s) | 1178 |
| EgeI | GGCGCC | 1 cut(s) | 879 |
| EheI | GGCGCC | 1 cut(s) | 879 |
| FaeI | CATG | 5 cut(s) | 238, 309, 319, 607, 767 |
| FaqI | GGGAC | 2 cut(s) | 896, 947 |
| FatI | CATG | 5 cut(s) | 234, 305, 315, 603, 763 |
| FauI | CCCGC | 1 cut(s) | 314 |
| FauNDI | CATATG | 1 cut(s) | 1093 |
| Fnu4HI | GCNGC | 1 cut(s) | 387 |
| FriOI | GRGCYC | 1 cut(s) | 1178 |
| Fsp4HI | GCNGC | 1 cut(s) | 387 |
| FspBI | CTAG | 1 cut(s) | 696 |
| GlaI | GCGC | 2 cut(s) | 385, 879 |
| GluI | GCNGC | 1 cut(s) | 387 |
| GsaI | CCCAGC | 1 cut(s) | 565 |
| HaeII | RGCGCY | 2 cut(s) | 387, 881 |
| HaeIII | GGCC | 1 cut(s) | 651 |
| HhaI | GCGC | 2 cut(s) | 386, 880 |
| Hin1I | GRCGYC | 1 cut(s) | 878 |
| Hin1II | CATG | 5 cut(s) | 238, 309, 319, 607, 767 |
| Hin6I | GCGC | 2 cut(s) | 384, 878 |
| HinP1I | GCGC | 2 cut(s) | 384, 878 |
| HincII | GTYRAC | 1 cut(s) | 247 |
| HindII | GTYRAC | 1 cut(s) | 247 |
| HindIII | AAGCTT | 1 cut(s) | 1152 |
| HinfI | GANTC | 4 cut(s) | 8, 587, 994, 1044 |
| HphI | GGTGA | 3 cut(s) | 169, 683, 1031 |
| Hpy166II | GTNNAC | 3 cut(s) | 247, 463, 740 |
| Hpy188III | TCNNGA | 2 cut(s) | 65, 201 |
| Hpy8I | GTNNAC | 3 cut(s) | 247, 463, 740 |
| HpyAV | CCTTC | 2 cut(s) | 321, 753 |
| HpyCH4III | ACNGT | 1 cut(s) | 664 |
| HpyCH4V | TGCA | 4 cut(s) | 292, 389, 607, 1119 |
| Hsp92I | GRCGYC | 1 cut(s) | 878 |
| Hsp92II | CATG | 5 cut(s) | 238, 309, 319, 607, 767 |
| HspAI | GCGC | 2 cut(s) | 384, 878 |
| KasI | GGCGCC | 1 cut(s) | 877 |
| Kzo9I | GATC | 1 cut(s) | 1023 |
| LmnI | GCTCC | 4 cut(s) | 23, 535, 853, 976 |
| Lsp1109I | GCAGC | 1 cut(s) | 373 |
| LweI | GCATC | 3 cut(s) | 816, 835, 1060 |
| MaeI | CTAG | 1 cut(s) | 696 |
| MaeIII | GTNAC | 1 cut(s) | 610 |
| MalI | GATC | 1 cut(s) | 1025 |
| MboI | GATC | 1 cut(s) | 1023 |
| MboII | GAAGA | 3 cut(s) | 854, 879, 894 |
| MflI | RGATCY | 1 cut(s) | 1023 |
| MhlI | GDGCHC | 3 cut(s) | 1012, 1089, 1178 |
| Mly113I | GGCGCC | 1 cut(s) | 878 |
| MlyI | GAGTC | 2 cut(s) | 17, 1053 |
| MmeI | TCCRAC | 1 cut(s) | 1204 |
| Mph1103I | ATGCAT | 1 cut(s) | 294 |
| MroXI | GAANNNNTTC | 1 cut(s) | 377 |
| MseI | TTAA | 2 cut(s) | 1038, 1125 |
| MspCI | CTTAAG | 1 cut(s) | 1124 |
| Mva1269I | GAATGC | 1 cut(s) | 292 |
| NarI | GGCGCC | 1 cut(s) | 878 |
| NdeI | CATATG | 1 cut(s) | 1093 |
| NdeII | GATC | 1 cut(s) | 1023 |
| NlaIII | CATG | 5 cut(s) | 238, 309, 319, 607, 767 |
| NlaIV | GGNNCC | 5 cut(s) | 476, 558, 879, 1009, 1215 |
| NsiI | ATGCAT | 1 cut(s) | 294 |
| NspI | RCATGY | 1 cut(s) | 309 |
| NspV | TTCGAA | 1 cut(s) | 629 |
| PaqCI | CACCTGC | 1 cut(s) | 1072 |
| PciI | ACATGT | 1 cut(s) | 305 |
| PctI | GAATGC | 1 cut(s) | 292 |
| PdmI | GAANNNNTTC | 1 cut(s) | 377 |
| PfeI | GAWTC | 2 cut(s) | 587, 994 |
| PkrI | GCNGC | 1 cut(s) | 388 |
| PleI | GAGTC | 2 cut(s) | 16, 1052 |
| PluTI | GGCGCC | 1 cut(s) | 881 |
| PpsI | GAGTC | 2 cut(s) | 16, 1052 |
| PpuMI | RGGWCCY | 1 cut(s) | 1213 |
| PscI | ACATGT | 1 cut(s) | 305 |
| Psp124BI | GAGCTC | 1 cut(s) | 1178 |
| Psp5II | RGGWCCY | 1 cut(s) | 1213 |
| PspFI | CCCAGC | 1 cut(s) | 561 |
| PspN4I | GGNNCC | 5 cut(s) | 476, 558, 879, 1009, 1215 |
| PspPI | GGNCC | 1 cut(s) | 1213 |
| PspPPI | RGGWCCY | 1 cut(s) | 1213 |
| PsuI | RGATCY | 1 cut(s) | 1023 |
| RsaI | GTAC | 2 cut(s) | 326, 1208 |
| RsaNI | GTAC | 2 cut(s) | 325, 1207 |
| SacI | GAGCTC | 1 cut(s) | 1178 |
| SaqAI | TTAA | 2 cut(s) | 1038, 1125 |
| SatI | GCNGC | 1 cut(s) | 387 |
| Sau3AI | GATC | 1 cut(s) | 1023 |
| Sau96I | GGNCC | 1 cut(s) | 1213 |
| SchI | GAGTC | 2 cut(s) | 17, 1053 |
| SduI | GDGCHC | 3 cut(s) | 1012, 1089, 1178 |
| SfaNI | GCATC | 3 cut(s) | 816, 835, 1060 |
| SfcI | CTRYAG | 1 cut(s) | 933 |
| SfoI | GGCGCC | 1 cut(s) | 879 |
| SfuI | TTCGAA | 1 cut(s) | 629 |
| SinI | GGWCC | 1 cut(s) | 1213 |
| SmlI | CTYRAG | 2 cut(s) | 456, 1124 |
| SmoI | CTYRAG | 2 cut(s) | 456, 1124 |
| SsiI | CCGC | 2 cut(s) | 321, 502 |
| SspDI | GGCGCC | 1 cut(s) | 877 |
| SspMI | CTAG | 1 cut(s) | 696 |
| SstI | GAGCTC | 1 cut(s) | 1178 |
| TaaI | ACNGT | 1 cut(s) | 664 |
| TaqI | TCGA | 3 cut(s) | 66, 629, 905 |
| TatI | WGTACW | 1 cut(s) | 1206 |
| TfiI | GAWTC | 2 cut(s) | 587, 994 |
| Tru1I | TTAA | 2 cut(s) | 1038, 1125 |
| Tru9I | TTAA | 2 cut(s) | 1038, 1125 |
| TseI | GCWGC | 1 cut(s) | 386 |
| TspDTI | ATGAA | 5 cut(s) | 29, 63, 72, 592, 855 |
| TspGWI | ACGGA | 1 cut(s) | 1178 |
| Vha464I | CTTAAG | 1 cut(s) | 1124 |
| VpaK11BI | GGWCC | 1 cut(s) | 1213 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1002 |
| XapI | RAATTY | 4 cut(s) | 59, 82, 481, 757 |
| XceI | RCATGY | 1 cut(s) | 309 |
| XmnI | GAANNNNTTC | 1 cut(s) | 377 |
| XspI | CTAG | 1 cut(s) | 696 |
| Zsp2I | ATGCAT | 1 cut(s) | 294 |