transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| rve | PF00665 | 13 - 105 | 1.4e-17 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 319 |
| AccBSI | CCGCTC | 1 cut(s) | 324 |
| AccI | GTMKAC | 1 cut(s) | 730 |
| AccII | CGCG | 2 cut(s) | 727, 918 |
| AciI | CCGC | 2 cut(s) | 324, 916 |
| AclWI | GGATC | 1 cut(s) | 914 |
| AcoI | YGGCCR | 1 cut(s) | 138 |
| AcsI | RAATTY | 3 cut(s) | 173, 275, 360 |
| AfaI | GTAC | 4 cut(s) | 148, 215, 816, 909 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 830 |
| AflIII | ACRYGT | 1 cut(s) | 837 |
| AgsI | TTSAA | 7 cut(s) | 120, 172, 181, 280, 515, 721, 844 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 707 |
| AjnI | CCWGG | 2 cut(s) | 209, 742 |
| AluBI | AGCT | 5 cut(s) | 75, 263, 511, 598, 913 |
| AluI | AGCT | 5 cut(s) | 75, 263, 511, 598, 913 |
| Alw26I | GTCTC | 1 cut(s) | 468 |
| AlwI | GGATC | 1 cut(s) | 914 |
| AoxI | GGCC | 2 cut(s) | 138, 770 |
| ApeKI | GCWGC | 1 cut(s) | 260 |
| ApoI | RAATTY | 3 cut(s) | 173, 275, 360 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 839 |
| AspS9I | GGNCC | 3 cut(s) | 62, 380, 770 |
| AsuC2I | CCSGG | 1 cut(s) | 388 |
| AsuHPI | GGTGA | 1 cut(s) | 901 |
| AvaII | GGWCC | 2 cut(s) | 62, 380 |
| BalI | TGGCCA | 1 cut(s) | 140 |
| BbsI | GAAGAC | 1 cut(s) | 377 |
| BbvI | GCAGC | 1 cut(s) | 272 |
| BccI | CCATC | 2 cut(s) | 221, 692 |
| BceAI | ACGGC | 1 cut(s) | 453 |
| BciT130I | CCWGG | 2 cut(s) | 211, 744 |
| BciVI | GTATCC | 1 cut(s) | 349 |
| BcnI | CCSGG | 1 cut(s) | 388 |
| BcoDI | GTCTC | 1 cut(s) | 468 |
| BfaI | CTAG | 4 cut(s) | 72, 599, 759, 929 |
| BfmI | CTRYAG | 1 cut(s) | 882 |
| BfuAI | ACCTGC | 1 cut(s) | 319 |
| BfuI | GTATCC | 1 cut(s) | 349 |
| BisI | GCNGC | 1 cut(s) | 261 |
| BlsI | GCNGC | 1 cut(s) | 262 |
| Bme1390I | CCNGG | 3 cut(s) | 211, 388, 744 |
| Bme18I | GGWCC | 2 cut(s) | 62, 380 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 707 |
| BmgT120I | GGNCC | 3 cut(s) | 62, 380, 770 |
| BmiI | GGNNCC | 2 cut(s) | 63, 235 |
| BmrFI | CCNGG | 3 cut(s) | 211, 388, 744 |
| BmsI | GCATC | 2 cut(s) | 145, 553 |
| BpiI | GAAGAC | 1 cut(s) | 377 |
| Bpu10I | CCTNAGC | 1 cut(s) | 269 |
| BpuMI | CCSGG | 1 cut(s) | 388 |
| BsaJI | CCNNGG | 2 cut(s) | 209, 742 |
| BsaWI | WCCGGW | 1 cut(s) | 502 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 830 |
| Bse1I | ACTGG | 1 cut(s) | 923 |
| BseBI | CCWGG | 2 cut(s) | 211, 744 |
| BseDI | CCNNGG | 2 cut(s) | 209, 742 |
| BseGI | GGATG | 2 cut(s) | 310, 465 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 830 |
| BseMII | CTCAG | 2 cut(s) | 92, 329 |
| BseNI | ACTGG | 1 cut(s) | 923 |
| BseXI | GCAGC | 1 cut(s) | 272 |
| BseYI | CCCAGC | 1 cut(s) | 6 |
| Bsh1236I | CGCG | 2 cut(s) | 727, 918 |
| BshFI | GGCC | 2 cut(s) | 140, 772 |
| BsiSI | CCGG | 2 cut(s) | 388, 503 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 830 |
| BsmAI | GTCTC | 1 cut(s) | 468 |
| BsnI | GGCC | 2 cut(s) | 140, 772 |
| Bsp143I | GATC | 1 cut(s) | 919 |
| BspACI | CCGC | 2 cut(s) | 324, 916 |
| BspANI | GGCC | 2 cut(s) | 140, 772 |
| BspCNI | CTCAG | 2 cut(s) | 91, 328 |
| BspFNI | CGCG | 2 cut(s) | 727, 918 |
| BspHI | TCATGA | 1 cut(s) | 664 |
| BspLI | GGNNCC | 2 cut(s) | 63, 235 |
| BspMAI | CTGCAG | 1 cut(s) | 886 |
| BspMI | ACCTGC | 1 cut(s) | 319 |
| BspPI | GGATC | 1 cut(s) | 914 |
| BsrBI | CCGCTC | 1 cut(s) | 324 |
| BsrI | ACTGG | 1 cut(s) | 923 |
| BssECI | CCNNGG | 2 cut(s) | 209, 742 |
| BssMI | GATC | 1 cut(s) | 919 |
| Bst2UI | CCWGG | 2 cut(s) | 211, 744 |
| Bst4CI | ACNGT | 4 cut(s) | 163, 189, 376, 870 |
| BstC8I | GCNNGC | 2 cut(s) | 326, 882 |
| BstDEI | CTNAG | 4 cut(s) | 78, 269, 315, 409 |
| BstF5I | GGATG | 2 cut(s) | 310, 465 |
| BstFNI | CGCG | 2 cut(s) | 727, 918 |
| BstKTI | GATC | 1 cut(s) | 922 |
| BstMAI | GTCTC | 1 cut(s) | 468 |
| BstMBI | GATC | 1 cut(s) | 919 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 425, 530, 803, 934 |
| BstNI | CCWGG | 2 cut(s) | 211, 744 |
| BstSCI | CCNGG | 3 cut(s) | 209, 386, 742 |
| BstSFI | CTRYAG | 1 cut(s) | 882 |
| BstUI | CGCG | 2 cut(s) | 727, 918 |
| BstV1I | GCAGC | 1 cut(s) | 272 |
| BstV2I | GAAGAC | 1 cut(s) | 377 |
| BsuI | GTATCC | 1 cut(s) | 349 |
| BsuRI | GGCC | 2 cut(s) | 140, 772 |
| BtsCI | GGATG | 2 cut(s) | 310, 465 |
| BtsI | GCAGTG | 1 cut(s) | 141 |
| BtsIMutI | CAGTG | 4 cut(s) | 141, 185, 229, 930 |
| BveI | ACCTGC | 1 cut(s) | 319 |
| Cac8I | GCNNGC | 2 cut(s) | 326, 882 |
| CciI | TCATGA | 1 cut(s) | 664 |
| Cfr13I | GGNCC | 3 cut(s) | 62, 380, 770 |
| CseI | GACGC | 1 cut(s) | 716 |
| Csp6I | GTAC | 4 cut(s) | 147, 214, 815, 908 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 108, 143 |
| CviAII | CATG | 2 cut(s) | 665, 800 |
| CviQI | GTAC | 4 cut(s) | 147, 214, 815, 908 |
| DdeI | CTNAG | 4 cut(s) | 78, 269, 315, 409 |
| DpnI | GATC | 1 cut(s) | 921 |
| DpnII | GATC | 1 cut(s) | 919 |
| DriI | GACNNNNNGTC | 1 cut(s) | 707 |
| EaeI | YGGCCR | 1 cut(s) | 138 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 707 |
| Eco47I | GGWCC | 2 cut(s) | 62, 380 |
| EcoO109I | RGGNCCY | 1 cut(s) | 62 |
| EcoRII | CCWGG | 2 cut(s) | 209, 742 |
| FaeI | CATG | 2 cut(s) | 668, 803 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 673, 705, 699, 731 |
| FatI | CATG | 2 cut(s) | 664, 799 |
| FauI | CCCGC | 1 cut(s) | 317 |
| FblI | GTMKAC | 1 cut(s) | 730 |
| Fnu4HI | GCNGC | 1 cut(s) | 261 |
| FokI | GGATG | 2 cut(s) | 297, 472 |
| Fsp4HI | GCNGC | 1 cut(s) | 261 |
| FspBI | CTAG | 4 cut(s) | 72, 599, 759, 929 |
| GluI | GCNGC | 1 cut(s) | 261 |
| GsaI | CCCAGC | 1 cut(s) | 10 |
| HaeIII | GGCC | 2 cut(s) | 140, 772 |
| HapII | CCGG | 2 cut(s) | 388, 503 |
| HgaI | GACGC | 1 cut(s) | 716 |
| Hin1II | CATG | 2 cut(s) | 668, 803 |
| HincII | GTYRAC | 1 cut(s) | 404 |
| HindII | GTYRAC | 1 cut(s) | 404 |
| HinfI | GANTC | 4 cut(s) | 400, 607, 626, 636 |
| HpaII | CCGG | 2 cut(s) | 388, 503 |
| HphI | GGTGA | 1 cut(s) | 901 |
| Hpy166II | GTNNAC | 4 cut(s) | 404, 731, 749, 850 |
| Hpy188I | TCNGA | 2 cut(s) | 318, 825 |
| Hpy188III | TCNNGA | 1 cut(s) | 665 |
| Hpy8I | GTNNAC | 4 cut(s) | 404, 731, 749, 850 |
| HpyCH4III | ACNGT | 4 cut(s) | 163, 189, 376, 870 |
| HpyCH4IV | ACGT | 1 cut(s) | 839 |
| HpyCH4V | TGCA | 4 cut(s) | 104, 260, 806, 884 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 425, 530, 803, 934 |
| HpyF3I | CTNAG | 4 cut(s) | 78, 269, 315, 409 |
| HpySE526I | ACGT | 1 cut(s) | 839 |
| Hsp92II | CATG | 2 cut(s) | 668, 803 |
| Kzo9I | GATC | 1 cut(s) | 919 |
| LmnI | GCTCC | 3 cut(s) | 508, 918, 934 |
| Lsp1109I | GCAGC | 1 cut(s) | 272 |
| LweI | GCATC | 2 cut(s) | 145, 553 |
| MaeI | CTAG | 4 cut(s) | 72, 599, 759, 929 |
| MaeII | ACGT | 1 cut(s) | 839 |
| MaeIII | GTNAC | 2 cut(s) | 245, 582 |
| MalI | GATC | 1 cut(s) | 921 |
| MbiI | CCGCTC | 1 cut(s) | 324 |
| MboI | GATC | 1 cut(s) | 919 |
| MboII | GAAGA | 4 cut(s) | 382, 491, 838, 914 |
| MlsI | TGGCCA | 1 cut(s) | 140 |
| MluCI | AATT | 5 cut(s) | 15, 173, 275, 360, 721 |
| MluNI | TGGCCA | 1 cut(s) | 140 |
| MlyI | GAGTC | 2 cut(s) | 409, 635 |
| MmeI | TCCRAC | 2 cut(s) | 358, 366 |
| MnlI | CCTC | 6 cut(s) | 124, 224, 324, 409, 805, 880 |
| Mox20I | TGGCCA | 1 cut(s) | 140 |
| MroXI | GAANNNNTTC | 1 cut(s) | 839 |
| MscI | TGGCCA | 1 cut(s) | 140 |
| MseI | TTAA | 4 cut(s) | 537, 546, 678, 786 |
| Msp20I | TGGCCA | 1 cut(s) | 140 |
| MspI | CCGG | 2 cut(s) | 388, 503 |
| MspR9I | CCNGG | 3 cut(s) | 211, 388, 744 |
| MvaI | CCWGG | 2 cut(s) | 211, 744 |
| MvnI | CGCG | 2 cut(s) | 727, 918 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 425, 530, 803, 934 |
| NciI | CCSGG | 1 cut(s) | 388 |
| NdeII | GATC | 1 cut(s) | 919 |
| NlaIII | CATG | 2 cut(s) | 668, 803 |
| NlaIV | GGNNCC | 2 cut(s) | 63, 235 |
| PagI | TCATGA | 1 cut(s) | 664 |
| PdmI | GAANNNNTTC | 1 cut(s) | 839 |
| PfeI | GAWTC | 2 cut(s) | 607, 636 |
| PkrI | GCNGC | 1 cut(s) | 262 |
| PleI | GAGTC | 2 cut(s) | 408, 634 |
| PpsI | GAGTC | 2 cut(s) | 408, 634 |
| PpuMI | RGGWCCY | 1 cut(s) | 62 |
| Psp5II | RGGWCCY | 1 cut(s) | 62 |
| Psp6I | CCWGG | 2 cut(s) | 209, 742 |
| PspFI | CCCAGC | 1 cut(s) | 6 |
| PspGI | CCWGG | 2 cut(s) | 209, 742 |
| PspN4I | GGNNCC | 2 cut(s) | 63, 235 |
| PspPI | GGNCC | 3 cut(s) | 62, 380, 770 |
| PspPPI | RGGWCCY | 1 cut(s) | 62 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 739, 771 |
| PstI | CTGCAG | 1 cut(s) | 886 |
| RsaI | GTAC | 4 cut(s) | 148, 215, 816, 909 |
| RsaNI | GTAC | 4 cut(s) | 147, 214, 815, 908 |
| SaqAI | TTAA | 4 cut(s) | 537, 546, 678, 786 |
| SatI | GCNGC | 1 cut(s) | 261 |
| Sau3AI | GATC | 1 cut(s) | 919 |
| Sau96I | GGNCC | 3 cut(s) | 62, 380, 770 |
| SchI | GAGTC | 2 cut(s) | 409, 635 |
| ScrFI | CCNGG | 3 cut(s) | 211, 388, 744 |
| SfaNI | GCATC | 2 cut(s) | 145, 553 |
| SfcI | CTRYAG | 1 cut(s) | 882 |
| SinI | GGWCC | 2 cut(s) | 62, 380 |
| Sse9I | AATT | 5 cut(s) | 15, 173, 275, 360, 721 |
| SsiI | CCGC | 2 cut(s) | 324, 916 |
| SspMI | CTAG | 4 cut(s) | 72, 599, 759, 929 |
| StyD4I | CCNGG | 3 cut(s) | 209, 386, 742 |
| TaaI | ACNGT | 4 cut(s) | 163, 189, 376, 870 |
| TaiI | ACGT | 1 cut(s) | 842 |
| TaqI | TCGA | 2 cut(s) | 472, 810 |
| TasI | AATT | 5 cut(s) | 15, 173, 275, 360, 721 |
| TatI | WGTACW | 1 cut(s) | 907 |
| TfiI | GAWTC | 2 cut(s) | 607, 636 |
| Tru1I | TTAA | 4 cut(s) | 537, 546, 678, 786 |
| Tru9I | TTAA | 4 cut(s) | 537, 546, 678, 786 |
| TscAI | CASTG | 4 cut(s) | 141, 192, 229, 930 |
| TseI | GCWGC | 1 cut(s) | 260 |
| TspDTI | ATGAA | 3 cut(s) | 275, 563, 653 |
| TspGWI | ACGGA | 1 cut(s) | 867 |
| TspRI | CASTG | 4 cut(s) | 141, 192, 229, 930 |
| VpaK11BI | GGWCC | 2 cut(s) | 62, 380 |
| XapI | RAATTY | 3 cut(s) | 173, 275, 360 |
| XmiI | GTMKAC | 1 cut(s) | 730 |
| XmnI | GAANNNNTTC | 1 cut(s) | 839 |
| XspI | CTAG | 4 cut(s) | 72, 599, 759, 929 |