Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 514, 876 |
| Acc36I | ACCTGC | 1 cut(s) | 816 |
| AccB1I | GGYRCC | 2 cut(s) | 168, 686 |
| AciI | CCGC | 2 cut(s) | 406, 1017 |
| AclWI | GGATC | 1 cut(s) | 98 |
| AcoI | YGGCCR | 3 cut(s) | 129, 213, 277 |
| AcsI | RAATTY | 3 cut(s) | 710, 941, 974 |
| AcyI | GRCGYC | 2 cut(s) | 511, 873 |
| AdeI | CACNNNGTG | 1 cut(s) | 175 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 116, 165 |
| AgeI | ACCGGT | 1 cut(s) | 23 |
| AgsI | TTSAA | 2 cut(s) | 880, 979 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1012 |
| AjnI | CCWGG | 3 cut(s) | 115, 131, 505 |
| AleI | CACNNNNGTG | 1 cut(s) | 809 |
| AluBI | AGCT | 3 cut(s) | 314, 347, 616 |
| AluI | AGCT | 3 cut(s) | 314, 347, 616 |
| Alw21I | GWGCWC | 1 cut(s) | 962 |
| Alw26I | GTCTC | 1 cut(s) | 185 |
| Alw44I | GTGCAC | 1 cut(s) | 958 |
| AlwI | GGATC | 1 cut(s) | 98 |
| AoxI | GGCC | 3 cut(s) | 129, 213, 277 |
| ApaLI | GTGCAC | 1 cut(s) | 958 |
| ApeKI | GCWGC | 1 cut(s) | 87 |
| ApoI | RAATTY | 3 cut(s) | 710, 941, 974 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 737, 769 |
| AsiGI | ACCGGT | 1 cut(s) | 23 |
| AspLEI | GCGC | 1 cut(s) | 465 |
| AsuHPI | GGTGA | 3 cut(s) | 783, 853, 904 |
| AsuII | TTCGAA | 1 cut(s) | 31 |
| AxyI | CCTNAGG | 1 cut(s) | 540 |
| BaeGI | GKGCMC | 1 cut(s) | 962 |
| BalI | TGGCCA | 1 cut(s) | 279 |
| BanI | GGYRCC | 2 cut(s) | 168, 686 |
| BbsI | GAAGAC | 2 cut(s) | 506, 868 |
| Bbv12I | GWGCWC | 1 cut(s) | 962 |
| BbvI | GCAGC | 1 cut(s) | 99 |
| BccI | CCATC | 2 cut(s) | 266, 676 |
| BceAI | ACGGC | 1 cut(s) | 144 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 977, 1011 |
| BciT130I | CCWGG | 3 cut(s) | 117, 133, 507 |
| BclI | TGATCA | 1 cut(s) | 915 |
| BcoDI | GTCTC | 1 cut(s) | 185 |
| BfaI | CTAG | 4 cut(s) | 683, 738, 822, 869 |
| BfoI | RGCGCY | 1 cut(s) | 466 |
| BfuAI | ACCTGC | 1 cut(s) | 816 |
| BisI | GCNGC | 1 cut(s) | 88 |
| BlsI | GCNGC | 1 cut(s) | 89 |
| Bme1390I | CCNGG | 3 cut(s) | 117, 133, 507 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1012 |
| BmiI | GGNNCC | 5 cut(s) | 170, 309, 666, 688, 985 |
| BmrFI | CCNGG | 3 cut(s) | 117, 133, 507 |
| BmsI | GCATC | 2 cut(s) | 342, 583 |
| BpiI | GAAGAC | 2 cut(s) | 506, 868 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 698, 730 |
| BpmI | CTGGAG | 1 cut(s) | 294 |
| Bpu14I | TTCGAA | 1 cut(s) | 31 |
| BpuEI | CTTGAG | 4 cut(s) | 480, 680, 932, 1021 |
| Bsa29I | ATCGAT | 1 cut(s) | 141 |
| BsaHI | GRCGYC | 2 cut(s) | 511, 873 |
| BsaJI | CCNNGG | 2 cut(s) | 505, 771 |
| BsaWI | WCCGGW | 1 cut(s) | 23 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 233, 263 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 116, 165 |
| Bse118I | RCCGGY | 2 cut(s) | 23, 165 |
| Bse1I | ACTGG | 2 cut(s) | 91, 602 |
| Bse21I | CCTNAGG | 1 cut(s) | 540 |
| Bse3DI | GCAATG | 1 cut(s) | 570 |
| BseBI | CCWGG | 3 cut(s) | 117, 133, 507 |
| BseCI | ATCGAT | 1 cut(s) | 141 |
| BseDI | CCNNGG | 2 cut(s) | 505, 771 |
| BseGI | GGATG | 2 cut(s) | 598, 916 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 116, 165 |
| BseMI | GCAATG | 1 cut(s) | 570 |
| BseMII | CTCAG | 4 cut(s) | 44, 329, 443, 944 |
| BseNI | ACTGG | 2 cut(s) | 91, 602 |
| BseRI | GAGGAG | 2 cut(s) | 95, 677 |
| BseSI | GKGCMC | 1 cut(s) | 962 |
| BseXI | GCAGC | 1 cut(s) | 99 |
| BseYI | CCCAGC | 1 cut(s) | 518 |
| BsgI | GTGCAG | 1 cut(s) | 106 |
| BshFI | GGCC | 3 cut(s) | 131, 215, 279 |
| BshNI | GGYRCC | 2 cut(s) | 168, 686 |
| BshTI | ACCGGT | 1 cut(s) | 23 |
| BshVI | ATCGAT | 1 cut(s) | 141 |
| BsiHKAI | GWGCWC | 1 cut(s) | 962 |
| BsiSI | CCGG | 2 cut(s) | 24, 166 |
| BslFI | GGGAC | 1 cut(s) | 765 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 116, 165 |
| BsmAI | GTCTC | 1 cut(s) | 185 |
| BsmBI | CGTCTC | 1 cut(s) | 185 |
| BsmFI | GGGAC | 1 cut(s) | 765 |
| BsmI | GAATGC | 2 cut(s) | 401, 736 |
| BsnI | GGCC | 3 cut(s) | 131, 215, 279 |
| Bsp119I | TTCGAA | 1 cut(s) | 31 |
| Bsp1286I | GDGCHC | 1 cut(s) | 962 |
| Bsp143I | GATC | 5 cut(s) | 103, 414, 651, 758, 915 |
| BspACI | CCGC | 2 cut(s) | 406, 1017 |
| BspANI | GGCC | 3 cut(s) | 131, 215, 279 |
| BspCNI | CTCAG | 4 cut(s) | 45, 328, 442, 943 |
| BspDI | ATCGAT | 1 cut(s) | 141 |
| BspLI | GGNNCC | 5 cut(s) | 170, 309, 666, 688, 985 |
| BspMI | ACCTGC | 1 cut(s) | 816 |
| BspPI | GGATC | 1 cut(s) | 98 |
| BspQI | GCTCTTC | 1 cut(s) | 627 |
| BspT104I | TTCGAA | 1 cut(s) | 31 |
| BspT107I | GGYRCC | 2 cut(s) | 168, 686 |
| BsrDI | GCAATG | 1 cut(s) | 570 |
| BsrFI | RCCGGY | 2 cut(s) | 23, 165 |
| BsrI | ACTGG | 2 cut(s) | 91, 602 |
| BssAI | RCCGGY | 2 cut(s) | 23, 165 |
| BssECI | CCNNGG | 2 cut(s) | 505, 771 |
| BssMI | GATC | 5 cut(s) | 103, 414, 651, 758, 915 |
| BssNI | GRCGYC | 2 cut(s) | 511, 873 |
| Bst2UI | CCWGG | 3 cut(s) | 117, 133, 507 |
| Bst4CI | ACNGT | 2 cut(s) | 775, 994 |
| Bst6I | CTCTTC | 2 cut(s) | 56, 627 |
| BstACI | GRCGYC | 2 cut(s) | 511, 873 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 175, 655 |
| BstBI | TTCGAA | 1 cut(s) | 31 |
| BstDEI | CTNAG | 6 cut(s) | 53, 315, 429, 540, 617, 930 |
| BstDSI | CCRYGG | 1 cut(s) | 771 |
| BstF5I | GGATG | 2 cut(s) | 598, 916 |
| BstH2I | RGCGCY | 1 cut(s) | 466 |
| BstHHI | GCGC | 1 cut(s) | 465 |
| BstKTI | GATC | 5 cut(s) | 106, 417, 654, 761, 918 |
| BstMAI | GTCTC | 1 cut(s) | 185 |
| BstMBI | GATC | 5 cut(s) | 103, 414, 651, 758, 915 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 175, 471, 655, 664 |
| BstNI | CCWGG | 3 cut(s) | 117, 133, 507 |
| BstSCI | CCNGG | 3 cut(s) | 115, 131, 505 |
| BstSLI | GKGCMC | 1 cut(s) | 962 |
| BstV1I | GCAGC | 1 cut(s) | 99 |
| BstV2I | GAAGAC | 2 cut(s) | 506, 868 |
| Bsu15I | ATCGAT | 1 cut(s) | 141 |
| Bsu36I | CCTNAGG | 1 cut(s) | 540 |
| BsuRI | GGCC | 3 cut(s) | 131, 215, 279 |
| BsuTUI | ATCGAT | 1 cut(s) | 141 |
| BtgI | CCRYGG | 1 cut(s) | 771 |
| BtsCI | GGATG | 2 cut(s) | 598, 916 |
| BtsI | GCAGTG | 1 cut(s) | 403 |
| BtsIMutI | CAGTG | 2 cut(s) | 403, 609 |
| BveI | ACCTGC | 1 cut(s) | 816 |
| CfoI | GCGC | 1 cut(s) | 465 |
| Cfr10I | RCCGGY | 2 cut(s) | 23, 165 |
| ClaI | ATCGAT | 1 cut(s) | 141 |
| CseI | GACGC | 1 cut(s) | 167 |
| CspAI | ACCGGT | 1 cut(s) | 23 |
| CviAII | CATG | 1 cut(s) | 551 |
| DdeI | CTNAG | 6 cut(s) | 53, 315, 429, 540, 617, 930 |
| DpnI | GATC | 5 cut(s) | 105, 416, 653, 760, 917 |
| DpnII | GATC | 5 cut(s) | 103, 414, 651, 758, 915 |
| DraIII | CACNNNGTG | 1 cut(s) | 175 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1012 |
| EaeI | YGGCCR | 3 cut(s) | 129, 213, 277 |
| Eam1104I | CTCTTC | 2 cut(s) | 56, 627 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1012 |
| EarI | CTCTTC | 2 cut(s) | 56, 627 |
| EciI | GGCGGA | 1 cut(s) | 395 |
| Eco32I | GATATC | 1 cut(s) | 865 |
| Eco81I | CCTNAGG | 1 cut(s) | 540 |
| EcoRI | GAATTC | 1 cut(s) | 710 |
| EcoRII | CCWGG | 3 cut(s) | 115, 131, 505 |
| EcoRV | GATATC | 1 cut(s) | 865 |
| Esp3I | CGTCTC | 1 cut(s) | 185 |
| FaeI | CATG | 1 cut(s) | 554 |
| FaiI | YATR | 5 cut(s) | 350, 552, 778, 936, 1030 |
| FaqI | GGGAC | 1 cut(s) | 765 |
| FatI | CATG | 1 cut(s) | 550 |
| FbaI | TGATCA | 1 cut(s) | 915 |
| Fnu4HI | GCNGC | 1 cut(s) | 88 |
| FokI | GGATG | 2 cut(s) | 605, 923 |
| Fsp4HI | GCNGC | 1 cut(s) | 88 |
| FspBI | CTAG | 4 cut(s) | 683, 738, 822, 869 |
| GlaI | GCGC | 1 cut(s) | 464 |
| GluI | GCNGC | 1 cut(s) | 88 |
| GsaI | CCCAGC | 1 cut(s) | 522 |
| GsuI | CTGGAG | 1 cut(s) | 294 |
| HaeII | RGCGCY | 1 cut(s) | 466 |
| HaeIII | GGCC | 3 cut(s) | 131, 215, 279 |
| HapII | CCGG | 2 cut(s) | 24, 166 |
| HgaI | GACGC | 1 cut(s) | 167 |
| HhaI | GCGC | 1 cut(s) | 465 |
| Hin1I | GRCGYC | 2 cut(s) | 511, 873 |
| Hin1II | CATG | 1 cut(s) | 554 |
| Hin6I | GCGC | 1 cut(s) | 463 |
| HinP1I | GCGC | 1 cut(s) | 463 |
| HincII | GTYRAC | 2 cut(s) | 502, 548 |
| HindII | GTYRAC | 2 cut(s) | 502, 548 |
| HinfI | GANTC | 2 cut(s) | 189, 925 |
| HpaII | CCGG | 2 cut(s) | 24, 166 |
| HphI | GGTGA | 3 cut(s) | 783, 853, 904 |
| Hpy166II | GTNNAC | 4 cut(s) | 423, 502, 548, 960 |
| Hpy188I | TCNGA | 3 cut(s) | 185, 235, 318 |
| Hpy188III | TCNNGA | 4 cut(s) | 193, 610, 756, 880 |
| Hpy8I | GTNNAC | 4 cut(s) | 423, 502, 548, 960 |
| Hpy99I | CGWCG | 3 cut(s) | 206, 227, 239 |
| HpyAV | CCTTC | 3 cut(s) | 436, 577, 877 |
| HpyCH4III | ACNGT | 2 cut(s) | 775, 994 |
| HpyCH4IV | ACGT | 4 cut(s) | 201, 222, 511, 873 |
| HpyCH4V | TGCA | 9 cut(s) | 44, 87, 355, 401, 563, 596, 734, 938, 960 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 175, 471, 655, 664 |
| HpyF3I | CTNAG | 6 cut(s) | 53, 315, 429, 540, 617, 930 |
| HpySE526I | ACGT | 4 cut(s) | 201, 222, 511, 873 |
| Hsp92I | GRCGYC | 2 cut(s) | 511, 873 |
| Hsp92II | CATG | 1 cut(s) | 554 |
| HspAI | GCGC | 1 cut(s) | 463 |
| Ksp22I | TGATCA | 1 cut(s) | 915 |
| Kzo9I | GATC | 5 cut(s) | 103, 414, 651, 758, 915 |
| LguI | GCTCTTC | 1 cut(s) | 627 |
| LmnI | GCTCC | 2 cut(s) | 313, 664 |
| Lsp1109I | GCAGC | 1 cut(s) | 99 |
| LweI | GCATC | 2 cut(s) | 342, 583 |
| MaeI | CTAG | 4 cut(s) | 683, 738, 822, 869 |
| MaeII | ACGT | 4 cut(s) | 201, 222, 511, 873 |
| MaeIII | GTNAC | 3 cut(s) | 124, 828, 1004 |
| MalI | GATC | 5 cut(s) | 105, 416, 653, 760, 917 |
| MboI | GATC | 5 cut(s) | 103, 414, 651, 758, 915 |
| MboII | GAAGA | 9 cut(s) | 73, 86, 198, 253, 506, 521, 633, 644, 868 |
| MfeI | CAATTG | 1 cut(s) | 447 |
| MhlI | GDGCHC | 1 cut(s) | 962 |
| MlsI | TGGCCA | 1 cut(s) | 279 |
| MluCI | AATT | 5 cut(s) | 272, 447, 710, 941, 974 |
| MluNI | TGGCCA | 1 cut(s) | 279 |
| MmeI | TCCRAC | 3 cut(s) | 258, 505, 888 |
| Mox20I | TGGCCA | 1 cut(s) | 279 |
| MscI | TGGCCA | 1 cut(s) | 279 |
| MseI | TTAA | 3 cut(s) | 335, 750, 785 |
| MslI | CAYNNNNRTG | 1 cut(s) | 809 |
| Msp20I | TGGCCA | 1 cut(s) | 279 |
| MspA1I | CMGCKG | 1 cut(s) | 1019 |
| MspI | CCGG | 2 cut(s) | 24, 166 |
| MspR9I | CCNGG | 3 cut(s) | 117, 133, 507 |
| MunI | CAATTG | 1 cut(s) | 447 |
| Mva1269I | GAATGC | 2 cut(s) | 401, 736 |
| MvaI | CCWGG | 3 cut(s) | 117, 133, 507 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 175, 471, 655, 664 |
| NdeII | GATC | 5 cut(s) | 103, 414, 651, 758, 915 |
| NlaIII | CATG | 1 cut(s) | 554 |
| NlaIV | GGNNCC | 5 cut(s) | 170, 309, 666, 688, 985 |
| NmuCI | GTSAC | 1 cut(s) | 1004 |
| NspV | TTCGAA | 1 cut(s) | 31 |
| OliI | CACNNNNGTG | 1 cut(s) | 809 |
| PciSI | GCTCTTC | 1 cut(s) | 627 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 231 |
| PctI | GAATGC | 2 cut(s) | 401, 736 |
| PfeI | GAWTC | 2 cut(s) | 189, 925 |
| PinAI | ACCGGT | 1 cut(s) | 23 |
| PkrI | GCNGC | 1 cut(s) | 89 |
| Psp6I | CCWGG | 3 cut(s) | 115, 131, 505 |
| PspFI | CCCAGC | 1 cut(s) | 518 |
| PspGI | CCWGG | 3 cut(s) | 115, 131, 505 |
| PspN4I | GGNNCC | 5 cut(s) | 170, 309, 666, 688, 985 |
| RseI | CAYNNNNRTG | 1 cut(s) | 809 |
| SapI | GCTCTTC | 1 cut(s) | 627 |
| SaqAI | TTAA | 3 cut(s) | 335, 750, 785 |
| SatI | GCNGC | 1 cut(s) | 88 |
| Sau3AI | GATC | 5 cut(s) | 103, 414, 651, 758, 915 |
| ScrFI | CCNGG | 3 cut(s) | 117, 133, 507 |
| SduI | GDGCHC | 1 cut(s) | 962 |
| SfaNI | GCATC | 2 cut(s) | 342, 583 |
| SfuI | TTCGAA | 1 cut(s) | 31 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 809 |
| SmlI | CTYRAG | 4 cut(s) | 495, 659, 947, 1000 |
| SmoI | CTYRAG | 4 cut(s) | 495, 659, 947, 1000 |
| Sse9I | AATT | 5 cut(s) | 272, 447, 710, 941, 974 |
| SsiI | CCGC | 2 cut(s) | 406, 1017 |
| SspI | AATATT | 1 cut(s) | 898 |
| SspMI | CTAG | 4 cut(s) | 683, 738, 822, 869 |
| StyD4I | CCNGG | 3 cut(s) | 115, 131, 505 |
| TaaI | ACNGT | 2 cut(s) | 775, 994 |
| TaiI | ACGT | 4 cut(s) | 204, 225, 514, 876 |
| TaqI | TCGA | 3 cut(s) | 31, 102, 141 |
| TasI | AATT | 5 cut(s) | 272, 447, 710, 941, 974 |
| TfiI | GAWTC | 2 cut(s) | 189, 925 |
| Tru1I | TTAA | 3 cut(s) | 335, 750, 785 |
| Tru9I | TTAA | 3 cut(s) | 335, 750, 785 |
| TscAI | CASTG | 2 cut(s) | 403, 609 |
| TseFI | GTSAC | 1 cut(s) | 1004 |
| TseI | GCWGC | 1 cut(s) | 87 |
| Tsp45I | GTSAC | 1 cut(s) | 1004 |
| TspDTI | ATGAA | 1 cut(s) | 567 |
| TspGWI | ACGGA | 1 cut(s) | 691 |
| TspRI | CASTG | 2 cut(s) | 403, 609 |
| VneI | GTGCAC | 1 cut(s) | 958 |
| XapI | RAATTY | 3 cut(s) | 710, 941, 974 |
| XspI | CTAG | 4 cut(s) | 683, 738, 822, 869 |
| ZraI | GACGTC | 2 cut(s) | 512, 874 |