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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 909 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 873 |
| AccI | GTMKAC | 2 cut(s) | 1022, 1741 |
| AclI | AACGTT | 1 cut(s) | 92 |
| AclWI | GGATC | 3 cut(s) | 377, 921, 974 |
| AcsI | RAATTY | 7 cut(s) | 275, 835, 1054, 1278, 1355, 1361, 1625 |
| AfaI | GTAC | 1 cut(s) | 657 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 873, 1319, 1540 |
| AflIII | ACRYGT | 1 cut(s) | 156 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 296, 328, 532, 564 |
| AleI | CACNNNNGTG | 1 cut(s) | 284 |
| AluBI | AGCT | 8 cut(s) | 704, 797, 896, 1244, 1528, 1537, 1610, 1652 |
| AluI | AGCT | 8 cut(s) | 704, 797, 896, 1244, 1528, 1537, 1610, 1652 |
| Alw21I | GWGCWC | 2 cut(s) | 291, 1714 |
| Alw26I | GTCTC | 5 cut(s) | 616, 1089, 1153, 1204, 1310 |
| Alw44I | GTGCAC | 1 cut(s) | 1710 |
| AlwI | GGATC | 3 cut(s) | 377, 921, 974 |
| Ama87I | CYCGRG | 1 cut(s) | 908 |
| AoxI | GGCC | 1 cut(s) | 886 |
| ApaLI | GTGCAC | 1 cut(s) | 1710 |
| ApeKI | GCWGC | 1 cut(s) | 1421 |
| ApoI | RAATTY | 7 cut(s) | 275, 835, 1054, 1278, 1355, 1361, 1625 |
| AspS9I | GGNCC | 3 cut(s) | 771, 1028, 1344 |
| AsuC2I | CCSGG | 1 cut(s) | 769 |
| AsuHPI | GGTGA | 2 cut(s) | 271, 814 |
| AvaI | CYCGRG | 1 cut(s) | 908 |
| AvaII | GGWCC | 3 cut(s) | 771, 1028, 1344 |
| BaeGI | GKGCMC | 1 cut(s) | 1714 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 693, 725 |
| Bbv12I | GWGCWC | 2 cut(s) | 291, 1714 |
| BbvI | GCAGC | 1 cut(s) | 1433 |
| BccI | CCATC | 6 cut(s) | 465, 471, 572, 1480, 1612, 1723 |
| BcnI | CCSGG | 1 cut(s) | 769 |
| BcoDI | GTCTC | 5 cut(s) | 616, 1089, 1153, 1204, 1310 |
| BfaI | CTAG | 2 cut(s) | 360, 936 |
| BfuAI | ACCTGC | 1 cut(s) | 909 |
| BisI | GCNGC | 1 cut(s) | 1422 |
| BlsI | GCNGC | 1 cut(s) | 1423 |
| Bme1390I | CCNGG | 1 cut(s) | 769 |
| Bme18I | GGWCC | 3 cut(s) | 771, 1028, 1344 |
| BmeT110I | CYCGRG | 1 cut(s) | 908 |
| BmgT120I | GGNCC | 3 cut(s) | 771, 1028, 1344 |
| BmiI | GGNNCC | 1 cut(s) | 1346 |
| BmrFI | CCNGG | 1 cut(s) | 769 |
| BmsI | GCATC | 3 cut(s) | 459, 1287, 1691 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1184 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1249, 1281 |
| BpuMI | CCSGG | 1 cut(s) | 769 |
| BsaAI | YACGTR | 1 cut(s) | 1709 |
| BsaI | GGTCTC | 1 cut(s) | 1089 |
| BsaJI | CCNNGG | 1 cut(s) | 909 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 965, 995 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 873, 1319, 1540 |
| Bse3DI | GCAATG | 1 cut(s) | 632 |
| BseDI | CCNNGG | 1 cut(s) | 909 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 873, 1319, 1540 |
| BseMI | GCAATG | 1 cut(s) | 632 |
| BseMII | CTCAG | 3 cut(s) | 611, 1354, 1592 |
| BseRI | GAGGAG | 1 cut(s) | 724 |
| BseSI | GKGCMC | 1 cut(s) | 1714 |
| BseXI | GCAGC | 1 cut(s) | 1433 |
| BseYI | CCCAGC | 1 cut(s) | 853 |
| BshFI | GGCC | 1 cut(s) | 888 |
| BsiHKAI | GWGCWC | 2 cut(s) | 291, 1714 |
| BsiHKCI | CYCGRG | 1 cut(s) | 908 |
| BsiSI | CCGG | 2 cut(s) | 769, 964 |
| BslFI | GGGAC | 2 cut(s) | 54, 1063 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 873, 1319, 1540 |
| BsmAI | GTCTC | 5 cut(s) | 616, 1089, 1153, 1204, 1310 |
| BsmBI | CGTCTC | 1 cut(s) | 1310 |
| BsmFI | GGGAC | 2 cut(s) | 54, 1063 |
| BsmI | GAATGC | 1 cut(s) | 347 |
| BsnI | GGCC | 1 cut(s) | 888 |
| Bso31I | GGTCTC | 1 cut(s) | 1089 |
| BsoBI | CYCGRG | 1 cut(s) | 908 |
| Bsp1286I | GDGCHC | 2 cut(s) | 291, 1714 |
| Bsp143I | GATC | 4 cut(s) | 382, 913, 966, 1225 |
| BspANI | GGCC | 1 cut(s) | 888 |
| BspCNI | CTCAG | 3 cut(s) | 612, 1353, 1591 |
| BspHI | TCATGA | 1 cut(s) | 1440 |
| BspLI | GGNNCC | 1 cut(s) | 1346 |
| BspMI | ACCTGC | 1 cut(s) | 909 |
| BspPI | GGATC | 3 cut(s) | 377, 921, 974 |
| BspTNI | GGTCTC | 1 cut(s) | 1089 |
| BsrDI | GCAATG | 1 cut(s) | 632 |
| BssECI | CCNNGG | 1 cut(s) | 909 |
| BssMI | GATC | 4 cut(s) | 382, 913, 966, 1225 |
| BssNAI | GTATAC | 1 cut(s) | 1023 |
| Bst1107I | GTATAC | 1 cut(s) | 1023 |
| Bst4CI | ACNGT | 1 cut(s) | 1063 |
| BstBAI | YACGTR | 1 cut(s) | 1709 |
| BstDEI | CTNAG | 3 cut(s) | 620, 1340, 1578 |
| BstKTI | GATC | 4 cut(s) | 385, 916, 969, 1228 |
| BstMAI | GTCTC | 5 cut(s) | 616, 1089, 1153, 1204, 1310 |
| BstMBI | GATC | 4 cut(s) | 382, 913, 966, 1225 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1138, 1382, 1421, 1534 |
| BstNSI | RCATGY | 2 cut(s) | 160, 1016 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1184 |
| BstSCI | CCNGG | 1 cut(s) | 767 |
| BstSLI | GKGCMC | 1 cut(s) | 1714 |
| BstV1I | GCAGC | 1 cut(s) | 1433 |
| BstX2I | RGATCY | 1 cut(s) | 913 |
| BstYI | RGATCY | 1 cut(s) | 913 |
| BstZ17I | GTATAC | 1 cut(s) | 1023 |
| BsuRI | GGCC | 1 cut(s) | 888 |
| BtgZI | GCGATG | 1 cut(s) | 1584 |
| BtsIMutI | CAGTG | 1 cut(s) | 1560 |
| BveI | ACCTGC | 1 cut(s) | 909 |
| CciI | TCATGA | 1 cut(s) | 1440 |
| Cfr13I | GGNCC | 3 cut(s) | 771, 1028, 1344 |
| Csp6I | GTAC | 1 cut(s) | 656 |
| CviQI | GTAC | 1 cut(s) | 656 |
| DdeI | CTNAG | 3 cut(s) | 620, 1340, 1578 |
| DpnI | GATC | 4 cut(s) | 384, 915, 968, 1227 |
| DpnII | GATC | 4 cut(s) | 382, 913, 966, 1225 |
| DraI | TTTAAA | 1 cut(s) | 333 |
| Eco31I | GGTCTC | 1 cut(s) | 1089 |
| Eco47I | GGWCC | 3 cut(s) | 771, 1028, 1344 |
| Eco88I | CYCGRG | 1 cut(s) | 908 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1028, 1344 |
| EcoRI | GAATTC | 1 cut(s) | 1625 |
| Esp3I | CGTCTC | 1 cut(s) | 1310 |
| FaqI | GGGAC | 2 cut(s) | 54, 1063 |
| FauNDI | CATATG | 1 cut(s) | 504 |
| FblI | GTMKAC | 2 cut(s) | 1022, 1741 |
| Fnu4HI | GCNGC | 1 cut(s) | 1422 |
| Fsp4HI | GCNGC | 1 cut(s) | 1422 |
| FspBI | CTAG | 2 cut(s) | 360, 936 |
| GluI | GCNGC | 1 cut(s) | 1422 |
| GsaI | CCCAGC | 1 cut(s) | 857 |
| HaeIII | GGCC | 1 cut(s) | 888 |
| HapII | CCGG | 2 cut(s) | 769, 964 |
| HincII | GTYRAC | 2 cut(s) | 879, 973 |
| HindII | GTYRAC | 2 cut(s) | 879, 973 |
| HindIII | AAGCTT | 1 cut(s) | 702 |
| HinfI | GANTC | 8 cut(s) | 4, 356, 580, 728, 978, 1288, 1336, 1560 |
| HpaII | CCGG | 2 cut(s) | 769, 964 |
| HphI | GGTGA | 2 cut(s) | 271, 814 |
| Hpy166II | GTNNAC | 6 cut(s) | 879, 973, 1023, 1496, 1712, 1742 |
| Hpy188I | TCNGA | 5 cut(s) | 621, 1179, 1287, 1296, 1395 |
| Hpy188III | TCNNGA | 6 cut(s) | 473, 510, 943, 1223, 1342, 1441 |
| Hpy8I | GTNNAC | 6 cut(s) | 879, 973, 1023, 1496, 1712, 1742 |
| HpyAV | CCTTC | 2 cut(s) | 700, 995 |
| HpyCH4III | ACNGT | 1 cut(s) | 1063 |
| HpyCH4IV | ACGT | 2 cut(s) | 92, 1708 |
| HpyCH4V | TGCA | 8 cut(s) | 28, 73, 124, 147, 347, 922, 1680, 1712 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1138, 1382, 1421, 1534 |
| HpyF3I | CTNAG | 3 cut(s) | 620, 1340, 1578 |
| HpySE526I | ACGT | 2 cut(s) | 92, 1708 |
| Kzo9I | GATC | 4 cut(s) | 382, 913, 966, 1225 |
| Lsp1109I | GCAGC | 1 cut(s) | 1433 |
| LweI | GCATC | 3 cut(s) | 459, 1287, 1691 |
| MaeI | CTAG | 2 cut(s) | 360, 936 |
| MaeII | ACGT | 2 cut(s) | 92, 1708 |
| MaeIII | GTNAC | 2 cut(s) | 152, 1431 |
| MalI | GATC | 4 cut(s) | 384, 915, 968, 1227 |
| MboI | GATC | 4 cut(s) | 382, 913, 966, 1225 |
| MboII | GAAGA | 3 cut(s) | 111, 841, 1260 |
| MfeI | CAATTG | 2 cut(s) | 125, 868 |
| MflI | RGATCY | 1 cut(s) | 913 |
| MhlI | GDGCHC | 2 cut(s) | 291, 1714 |
| MlyI | GAGTC | 2 cut(s) | 365, 1282 |
| MmeI | TCCRAC | 3 cut(s) | 544, 1150, 1418 |
| MnlI | CCTC | 9 cut(s) | 413, 563, 742, 745, 904, 1131, 1275, 1593, 1604 |
| MslI | CAYNNNNRTG | 1 cut(s) | 284 |
| MspA1I | CMGCKG | 1 cut(s) | 797 |
| MspI | CCGG | 2 cut(s) | 769, 964 |
| MspR9I | CCNGG | 1 cut(s) | 769 |
| MunI | CAATTG | 2 cut(s) | 125, 868 |
| Mva1269I | GAATGC | 1 cut(s) | 347 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1138, 1382, 1421, 1534 |
| NciI | CCSGG | 1 cut(s) | 769 |
| NdeI | CATATG | 1 cut(s) | 504 |
| NdeII | GATC | 4 cut(s) | 382, 913, 966, 1225 |
| NlaIV | GGNNCC | 1 cut(s) | 1346 |
| NmeAIII | GCCGAG | 1 cut(s) | 1520 |
| NmuCI | GTSAC | 1 cut(s) | 1431 |
| NspI | RCATGY | 2 cut(s) | 160, 1016 |
| OliI | CACNNNNGTG | 1 cut(s) | 284 |
| PagI | TCATGA | 1 cut(s) | 1440 |
| PciI | ACATGT | 1 cut(s) | 156 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 998 |
| PctI | GAATGC | 1 cut(s) | 347 |
| PfeI | GAWTC | 6 cut(s) | 4, 580, 728, 978, 1336, 1560 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 873 |
| PkrI | GCNGC | 1 cut(s) | 1423 |
| PleI | GAGTC | 2 cut(s) | 364, 1282 |
| PpsI | GAGTC | 2 cut(s) | 364, 1282 |
| Ppu21I | YACGTR | 1 cut(s) | 1709 |
| PpuMI | RGGWCCY | 2 cut(s) | 1028, 1344 |
| PscI | ACATGT | 1 cut(s) | 156 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1184 |
| Psp1406I | AACGTT | 1 cut(s) | 92 |
| Psp5II | RGGWCCY | 2 cut(s) | 1028, 1344 |
| PspFI | CCCAGC | 1 cut(s) | 853 |
| PspN4I | GGNNCC | 1 cut(s) | 1346 |
| PspPI | GGNCC | 3 cut(s) | 771, 1028, 1344 |
| PspPPI | RGGWCCY | 2 cut(s) | 1028, 1344 |
| PsuI | RGATCY | 1 cut(s) | 913 |
| PvuII | CAGCTG | 1 cut(s) | 797 |
| RsaI | GTAC | 1 cut(s) | 657 |
| RsaNI | GTAC | 1 cut(s) | 656 |
| RseI | CAYNNNNRTG | 1 cut(s) | 284 |
| SatI | GCNGC | 1 cut(s) | 1422 |
| Sau3AI | GATC | 4 cut(s) | 382, 913, 966, 1225 |
| Sau96I | GGNCC | 3 cut(s) | 771, 1028, 1344 |
| SchI | GAGTC | 2 cut(s) | 365, 1282 |
| ScrFI | CCNGG | 1 cut(s) | 769 |
| SduI | GDGCHC | 2 cut(s) | 291, 1714 |
| SfaNI | GCATC | 3 cut(s) | 459, 1287, 1691 |
| SinI | GGWCC | 3 cut(s) | 771, 1028, 1344 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 284 |
| SspI | AATATT | 1 cut(s) | 601 |
| SspMI | CTAG | 2 cut(s) | 360, 936 |
| StyD4I | CCNGG | 1 cut(s) | 767 |
| TaaI | ACNGT | 1 cut(s) | 1063 |
| TaiI | ACGT | 2 cut(s) | 95, 1711 |
| TaqI | TCGA | 1 cut(s) | 1246 |
| TaqII | GACCGA | 1 cut(s) | 972 |
| TfiI | GAWTC | 6 cut(s) | 4, 580, 728, 978, 1336, 1560 |
| TscAI | CASTG | 1 cut(s) | 1560 |
| TseFI | GTSAC | 1 cut(s) | 1431 |
| TseI | GCWGC | 1 cut(s) | 1421 |
| Tsp45I | GTSAC | 1 cut(s) | 1431 |
| TspGWI | ACGGA | 1 cut(s) | 538 |
| TspRI | CASTG | 1 cut(s) | 1560 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 873 |
| VneI | GTGCAC | 1 cut(s) | 1710 |
| VpaK11BI | GGWCC | 3 cut(s) | 771, 1028, 1344 |
| XapI | RAATTY | 7 cut(s) | 275, 835, 1054, 1278, 1355, 1361, 1625 |
| XceI | RCATGY | 2 cut(s) | 160, 1016 |
| XmiI | GTMKAC | 2 cut(s) | 1022, 1741 |
| XspI | CTAG | 2 cut(s) | 360, 936 |