protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 490 - 562 | 1.3e-09 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 626 - 724 | 3e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 651 - 754 | 8.1e-38 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 854 - 911 | 1.6e-11 | Integrase zinc binding domain |
| rve | PF00665 | 932 - 1025 | 1.3e-17 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1842 |
| AatII | GACGTC | 2 cut(s) | 147, 918 |
| Acc36I | ACCTGC | 2 cut(s) | 412, 784 |
| Acc65I | GGTACC | 1 cut(s) | 987 |
| AccB1I | GGYRCC | 1 cut(s) | 987 |
| AccI | GTMKAC | 3 cut(s) | 880, 1846, 3271 |
| AccII | CGCG | 1 cut(s) | 818 |
| AccIII | TCCGGA | 2 cut(s) | 1948, 2365 |
| AciI | CCGC | 7 cut(s) | 743, 816, 818, 892, 2320, 2411, 2537 |
| AclI | AACGTT | 2 cut(s) | 1151, 1606 |
| AclWI | GGATC | 7 cut(s) | 47, 170, 581, 744, 1314, 2507, 3001 |
| AcoI | YGGCCR | 1 cut(s) | 2014 |
| AcsI | RAATTY | 9 cut(s) | 473, 507, 941, 998, 2135, 2258, 2442, 2528, 2787 |
| AcuI | CTGAAG | 2 cut(s) | 1127, 1248 |
| AcyI | GRCGYC | 6 cut(s) | 144, 206, 915, 1119, 1373, 2340 |
| AdeI | CACNNNGTG | 1 cut(s) | 3055 |
| AfaI | GTAC | 7 cut(s) | 493, 709, 989, 1474, 2198, 2328, 3221 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 3303 |
| AflII | CTTAAG | 1 cut(s) | 2645 |
| AflIII | ACRYGT | 2 cut(s) | 2451, 2711 |
| AhlI | ACTAGT | 1 cut(s) | 3080 |
| AjiI | CACGTC | 1 cut(s) | 955 |
| AjnI | CCWGG | 5 cut(s) | 27, 589, 3228, 3254, 3346 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 758, 790, 3227, 3259 |
| AleI | CACNNNNGTG | 1 cut(s) | 1757 |
| Alw21I | GWGCWC | 1 cut(s) | 1974 |
| Alw26I | GTCTC | 4 cut(s) | 550, 945, 1363, 2878 |
| AlwI | GGATC | 7 cut(s) | 47, 170, 581, 744, 1314, 2507, 3001 |
| Ama87I | CYCGRG | 1 cut(s) | 2970 |
| Aor13HI | TCCGGA | 2 cut(s) | 1948, 2365 |
| AoxI | GGCC | 6 cut(s) | 700, 756, 1275, 2014, 2672, 3231 |
| ApeKI | GCWGC | 3 cut(s) | 2186, 3325, 3359 |
| ApoI | RAATTY | 9 cut(s) | 473, 507, 941, 998, 2135, 2258, 2442, 2528, 2787 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2441, 2473 |
| AseI | ATTAAT | 1 cut(s) | 1595 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1395, 2361, 3242 |
| Asp718I | GGTACC | 1 cut(s) | 987 |
| AspA2I | CCTAGG | 1 cut(s) | 703 |
| AspLEI | GCGC | 1 cut(s) | 2006 |
| AspS9I | GGNCC | 7 cut(s) | 1156, 1276, 1956, 2744, 2819, 3252, 3344 |
| AsuC2I | CCSGG | 1 cut(s) | 2902 |
| AsuHPI | GGTGA | 6 cut(s) | 34, 544, 592, 1571, 1876, 2345 |
| AsuII | TTCGAA | 1 cut(s) | 1569 |
| AvaI | CYCGRG | 1 cut(s) | 2970 |
| AvaII | GGWCC | 6 cut(s) | 1156, 1956, 2744, 2819, 3252, 3344 |
| AvrII | CCTAGG | 1 cut(s) | 703 |
| BaeGI | GKGCMC | 1 cut(s) | 462 |
| BalI | TGGCCA | 1 cut(s) | 2016 |
| BanI | GGYRCC | 1 cut(s) | 987 |
| BanII | GRGCYC | 1 cut(s) | 1974 |
| Bbv12I | GWGCWC | 1 cut(s) | 1974 |
| BbvI | GCAGC | 3 cut(s) | 2198, 3312, 3346 |
| BccI | CCATC | 9 cut(s) | 26, 941, 1109, 1384, 1425, 2051, 2232, 2534, 2981 |
| BciT130I | CCWGG | 5 cut(s) | 29, 591, 3230, 3256, 3348 |
| BciVI | GTATCC | 1 cut(s) | 397 |
| BclI | TGATCA | 2 cut(s) | 1077, 2179 |
| BcnI | CCSGG | 1 cut(s) | 2902 |
| BcoDI | GTCTC | 4 cut(s) | 550, 945, 1363, 2878 |
| BcuI | ACTAGT | 1 cut(s) | 3080 |
| BfmI | CTRYAG | 2 cut(s) | 2094, 3272 |
| BfrI | CTTAAG | 1 cut(s) | 2645 |
| BfuAI | ACCTGC | 2 cut(s) | 412, 784 |
| BfuI | GTATCC | 1 cut(s) | 397 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3185 |
| BglII | AGATCT | 2 cut(s) | 649, 2141 |
| BisI | GCNGC | 4 cut(s) | 2187, 2320, 3326, 3360 |
| BlnI | CCTAGG | 1 cut(s) | 703 |
| BlsI | GCNGC | 4 cut(s) | 2188, 2321, 3327, 3361 |
| BmcAI | AGTACT | 1 cut(s) | 2198 |
| Bme1390I | CCNGG | 6 cut(s) | 29, 591, 2902, 3230, 3256, 3348 |
| Bme18I | GGWCC | 6 cut(s) | 1156, 1956, 2744, 2819, 3252, 3344 |
| BmeT110I | CYCGRG | 1 cut(s) | 2970 |
| BmgBI | CACGTC | 1 cut(s) | 955 |
| BmgT120I | GGNCC | 7 cut(s) | 1156, 1276, 1956, 2744, 2819, 3252, 3344 |
| BmiI | GGNNCC | 5 cut(s) | 989, 1158, 1278, 2820, 3345 |
| BmrFI | CCNGG | 6 cut(s) | 29, 591, 2902, 3230, 3256, 3348 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 530, 562 |
| BpmI | CTGGAG | 1 cut(s) | 95 |
| Bpu14I | TTCGAA | 1 cut(s) | 1569 |
| BpuEI | CTTGAG | 4 cut(s) | 74, 1365, 1647, 2820 |
| BpuMI | CCSGG | 1 cut(s) | 2902 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2517 |
| BsaHI | GRCGYC | 6 cut(s) | 144, 206, 915, 1119, 1373, 2340 |
| BsaJI | CCNNGG | 8 cut(s) | 27, 703, 753, 816, 936, 2225, 2402, 3255 |
| BsaWI | WCCGGW | 5 cut(s) | 313, 1303, 1948, 2365, 2732 |
| BsaXI | ACNNNNNCTCC | 7 cut(s) | 1730, 1760, 1853, 1883, 1915, 1945, 3400 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 3303 |
| Bse3DI | GCAATG | 2 cut(s) | 257, 1343 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2517 |
| BseAI | TCCGGA | 2 cut(s) | 1948, 2365 |
| BseBI | CCWGG | 5 cut(s) | 29, 591, 3230, 3256, 3348 |
| BseDI | CCNNGG | 8 cut(s) | 27, 703, 753, 816, 936, 2225, 2402, 3255 |
| BseJI | GATNNNNATC | 1 cut(s) | 2517 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 3303 |
| BseMI | GCAATG | 2 cut(s) | 257, 1343 |
| BseMII | CTCAG | 2 cut(s) | 561, 1507 |
| BseRI | GAGGAG | 3 cut(s) | 152, 1185, 1212 |
| BseSI | GKGCMC | 1 cut(s) | 462 |
| BseXI | GCAGC | 3 cut(s) | 2198, 3312, 3346 |
| BsgI | GTGCAG | 2 cut(s) | 440, 812 |
| Bsh1236I | CGCG | 1 cut(s) | 818 |
| BshFI | GGCC | 6 cut(s) | 702, 758, 1277, 2016, 2674, 3233 |
| BshNI | GGYRCC | 1 cut(s) | 987 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1974 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2970 |
| BsiSI | CCGG | 6 cut(s) | 314, 1304, 1949, 2366, 2733, 2902 |
| BslFI | GGGAC | 2 cut(s) | 2832, 3357 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 3303 |
| BsmAI | GTCTC | 4 cut(s) | 550, 945, 1363, 2878 |
| BsmBI | CGTCTC | 1 cut(s) | 945 |
| BsmFI | GGGAC | 2 cut(s) | 2832, 3357 |
| BsmI | GAATGC | 3 cut(s) | 643, 2494, 2970 |
| BsnI | GGCC | 6 cut(s) | 702, 758, 1277, 2016, 2674, 3233 |
| BsoBI | CYCGRG | 1 cut(s) | 2970 |
| Bsp119I | TTCGAA | 1 cut(s) | 1569 |
| Bsp1286I | GDGCHC | 2 cut(s) | 462, 1974 |
| Bsp13I | TCCGGA | 2 cut(s) | 1948, 2365 |
| Bsp1407I | TGTACA | 2 cut(s) | 491, 2326 |
| Bsp19I | CCATGG | 1 cut(s) | 936 |
| BspACI | CCGC | 7 cut(s) | 743, 816, 818, 892, 2320, 2411, 2537 |
| BspANI | GGCC | 6 cut(s) | 702, 758, 1277, 2016, 2674, 3233 |
| BspCNI | CTCAG | 2 cut(s) | 560, 1506 |
| BspEI | TCCGGA | 2 cut(s) | 1948, 2365 |
| BspFNI | CGCG | 1 cut(s) | 818 |
| BspLI | GGNNCC | 5 cut(s) | 989, 1158, 1278, 2820, 3345 |
| BspMI | ACCTGC | 2 cut(s) | 412, 784 |
| BspPI | GGATC | 7 cut(s) | 47, 170, 581, 744, 1314, 2507, 3001 |
| BspT104I | TTCGAA | 1 cut(s) | 1569 |
| BspT107I | GGYRCC | 1 cut(s) | 987 |
| BspTI | CTTAAG | 1 cut(s) | 2645 |
| BsrDI | GCAATG | 2 cut(s) | 257, 1343 |
| BsrGI | TGTACA | 2 cut(s) | 491, 2326 |
| BssECI | CCNNGG | 8 cut(s) | 27, 703, 753, 816, 936, 2225, 2402, 3255 |
| BssNI | GRCGYC | 6 cut(s) | 144, 206, 915, 1119, 1373, 2340 |
| BssT1I | CCWWGG | 5 cut(s) | 703, 753, 936, 2225, 2402 |
| Bst2UI | CCWGG | 5 cut(s) | 29, 591, 3230, 3256, 3348 |
| Bst4CI | ACNGT | 1 cut(s) | 3136 |
| Bst6I | CTCTTC | 3 cut(s) | 310, 1263, 2384 |
| BstACI | GRCGYC | 6 cut(s) | 144, 206, 915, 1119, 1373, 2340 |
| BstAFI | CTTAAG | 1 cut(s) | 2645 |
| BstAUI | TGTACA | 2 cut(s) | 491, 2326 |
| BstBI | TTCGAA | 1 cut(s) | 1569 |
| BstC8I | GCNNGC | 4 cut(s) | 925, 1490, 2472, 2561 |
| BstDEI | CTNAG | 6 cut(s) | 547, 1493, 1579, 2428, 2631, 3029 |
| BstDSI | CCRYGG | 2 cut(s) | 816, 936 |
| BstFNI | CGCG | 1 cut(s) | 818 |
| BstHHI | GCGC | 1 cut(s) | 2006 |
| BstMAI | GTCTC | 4 cut(s) | 550, 945, 1363, 2878 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 82, 91, 2003, 3147, 3185, 3365 |
| BstNI | CCWGG | 5 cut(s) | 29, 591, 3230, 3256, 3348 |
| BstNSI | RCATGY | 4 cut(s) | 1492, 1790, 2474, 2715 |
| BstSCI | CCNGG | 6 cut(s) | 27, 589, 2900, 3228, 3254, 3346 |
| BstSFI | CTRYAG | 2 cut(s) | 2094, 3272 |
| BstSLI | GKGCMC | 1 cut(s) | 462 |
| BstUI | CGCG | 1 cut(s) | 818 |
| BstV1I | GCAGC | 3 cut(s) | 2198, 3312, 3346 |
| BstX2I | RGATCY | 5 cut(s) | 175, 586, 649, 749, 2141 |
| BstYI | RGATCY | 5 cut(s) | 175, 586, 649, 749, 2141 |
| BsuI | GTATCC | 1 cut(s) | 397 |
| BsuRI | GGCC | 6 cut(s) | 702, 758, 1277, 2016, 2674, 3233 |
| BtgI | CCRYGG | 2 cut(s) | 816, 936 |
| BtgZI | GCGATG | 1 cut(s) | 3401 |
| BtrI | CACGTC | 1 cut(s) | 955 |
| BtsI | GCAGTG | 1 cut(s) | 2013 |
| BtsIMutI | CAGTG | 2 cut(s) | 1272, 2013 |
| BveI | ACCTGC | 2 cut(s) | 412, 784 |
| Cac8I | GCNNGC | 4 cut(s) | 925, 1490, 2472, 2561 |
| CfoI | GCGC | 1 cut(s) | 2006 |
| Cfr13I | GGNCC | 7 cut(s) | 1156, 1276, 1956, 2744, 2819, 3252, 3344 |
| Cfr42I | CCGCGG | 1 cut(s) | 819 |
| CseI | GACGC | 7 cut(s) | 214, 1108, 1381, 1812, 2348, 3331, 3374 |
| Csp6I | GTAC | 7 cut(s) | 492, 708, 988, 1473, 2197, 2327, 3220 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 855, 890, 2865, 2900 |
| CviQI | GTAC | 7 cut(s) | 492, 708, 988, 1473, 2197, 2327, 3220 |
| DdeI | CTNAG | 6 cut(s) | 547, 1493, 1579, 2428, 2631, 3029 |
| DraI | TTTAAA | 2 cut(s) | 412, 1632 |
| DraIII | CACNNNGTG | 1 cut(s) | 3055 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1842 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1842 |
| EaeI | YGGCCR | 1 cut(s) | 2014 |
| Eam1104I | CTCTTC | 3 cut(s) | 310, 1263, 2384 |
| EarI | CTCTTC | 3 cut(s) | 310, 1263, 2384 |
| EciI | GGCGGA | 1 cut(s) | 758 |
| Ecl136II | GAGCTC | 1 cut(s) | 1972 |
| Eco130I | CCWWGG | 5 cut(s) | 703, 753, 936, 2225, 2402 |
| Eco147I | AGGCCT | 2 cut(s) | 702, 758 |
| Eco24I | GRGCYC | 1 cut(s) | 1974 |
| Eco47I | GGWCC | 6 cut(s) | 1156, 1956, 2744, 2819, 3252, 3344 |
| Eco53kI | GAGCTC | 1 cut(s) | 1972 |
| Eco57I | CTGAAG | 2 cut(s) | 1127, 1248 |
| Eco88I | CYCGRG | 1 cut(s) | 2970 |
| EcoICRI | GAGCTC | 1 cut(s) | 1972 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1276, 2744, 2819, 3344 |
| EcoRI | GAATTC | 1 cut(s) | 507 |
| EcoRII | CCWGG | 5 cut(s) | 27, 589, 3228, 3254, 3346 |
| EcoT14I | CCWWGG | 5 cut(s) | 703, 753, 936, 2225, 2402 |
| EcoT22I | ATGCAT | 3 cut(s) | 694, 1490, 2472 |
| EcoT38I | GRGCYC | 1 cut(s) | 1974 |
| ErhI | CCWWGG | 5 cut(s) | 703, 753, 936, 2225, 2402 |
| Esp3I | CGTCTC | 1 cut(s) | 945 |
| FaqI | GGGAC | 2 cut(s) | 2832, 3357 |
| FauI | CCCGC | 1 cut(s) | 823 |
| FbaI | TGATCA | 2 cut(s) | 1077, 2179 |
| FblI | GTMKAC | 3 cut(s) | 880, 1846, 3271 |
| Fnu4HI | GCNGC | 4 cut(s) | 2187, 2320, 3326, 3360 |
| FriOI | GRGCYC | 1 cut(s) | 1974 |
| Fsp4HI | GCNGC | 4 cut(s) | 2187, 2320, 3326, 3360 |
| GlaI | GCGC | 1 cut(s) | 2005 |
| GluI | GCNGC | 4 cut(s) | 2187, 2320, 3326, 3360 |
| GsuI | CTGGAG | 1 cut(s) | 95 |
| HaeIII | GGCC | 6 cut(s) | 702, 758, 1277, 2016, 2674, 3233 |
| HapII | CCGG | 6 cut(s) | 314, 1304, 1949, 2366, 2733, 2902 |
| HgaI | GACGC | 7 cut(s) | 214, 1108, 1381, 1812, 2348, 3331, 3374 |
| HhaI | GCGC | 1 cut(s) | 2006 |
| Hin1I | GRCGYC | 6 cut(s) | 144, 206, 915, 1119, 1373, 2340 |
| Hin6I | GCGC | 1 cut(s) | 2004 |
| HinP1I | GCGC | 1 cut(s) | 2004 |
| HincII | GTYRAC | 4 cut(s) | 427, 1371, 1847, 3060 |
| HindII | GTYRAC | 4 cut(s) | 427, 1371, 1847, 3060 |
| HindIII | AAGCTT | 1 cut(s) | 595 |
| HinfI | GANTC | 8 cut(s) | 115, 963, 1004, 1270, 2242, 2657, 2912, 3160 |
| HpaII | CCGG | 6 cut(s) | 314, 1304, 1949, 2366, 2733, 2902 |
| HphI | GGTGA | 6 cut(s) | 34, 544, 592, 1571, 1876, 2345 |
| Hpy188I | TCNGA | 7 cut(s) | 156, 765, 1507, 1990, 2384, 2605, 3321 |
| Hpy99I | CGWCG | 2 cut(s) | 2556, 3368 |
| HpyCH4III | ACNGT | 1 cut(s) | 3136 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 82, 91, 2003, 3147, 3185, 3365 |
| HpyF3I | CTNAG | 6 cut(s) | 547, 1493, 1579, 2428, 2631, 3029 |
| Hsp92I | GRCGYC | 6 cut(s) | 144, 206, 915, 1119, 1373, 2340 |
| HspAI | GCGC | 1 cut(s) | 2004 |
| Kpn2I | TCCGGA | 2 cut(s) | 1948, 2365 |
| KpnI | GGTACC | 1 cut(s) | 991 |
| Ksp22I | TGATCA | 2 cut(s) | 1077, 2179 |
| KspI | CCGCGG | 1 cut(s) | 819 |
| LmnI | GCTCC | 4 cut(s) | 1915, 1936, 3268, 3408 |
| Lsp1109I | GCAGC | 3 cut(s) | 2198, 3312, 3346 |
| MaeIII | GTNAC | 7 cut(s) | 620, 1103, 1646, 1657, 1864, 2431, 3043 |
| MfeI | CAATTG | 5 cut(s) | 737, 993, 1425, 2078, 3015 |
| MflI | RGATCY | 5 cut(s) | 175, 586, 649, 749, 2141 |
| MhlI | GDGCHC | 2 cut(s) | 462, 1974 |
| MlsI | TGGCCA | 1 cut(s) | 2016 |
| MluNI | TGGCCA | 1 cut(s) | 2016 |
| MlyI | GAGTC | 1 cut(s) | 3169 |
| MmeI | TCCRAC | 3 cut(s) | 37, 756, 1134 |
| Mox20I | TGGCCA | 1 cut(s) | 2016 |
| Mph1103I | ATGCAT | 3 cut(s) | 694, 1490, 2472 |
| MroI | TCCGGA | 2 cut(s) | 1948, 2365 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1395, 2361, 3242 |
| MscI | TGGCCA | 1 cut(s) | 2016 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1757 |
| Msp20I | TGGCCA | 1 cut(s) | 2016 |
| MspA1I | CMGCKG | 2 cut(s) | 551, 818 |
| MspCI | CTTAAG | 1 cut(s) | 2645 |
| MspI | CCGG | 6 cut(s) | 314, 1304, 1949, 2366, 2733, 2902 |
| MspR9I | CCNGG | 6 cut(s) | 29, 591, 2902, 3230, 3256, 3348 |
| MunI | CAATTG | 5 cut(s) | 737, 993, 1425, 2078, 3015 |
| Mva1269I | GAATGC | 3 cut(s) | 643, 2494, 2970 |
| MvaI | CCWGG | 5 cut(s) | 29, 591, 3230, 3256, 3348 |
| MvnI | CGCG | 1 cut(s) | 818 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 82, 91, 2003, 3147, 3185, 3365 |
| NciI | CCSGG | 1 cut(s) | 2902 |
| NcoI | CCATGG | 1 cut(s) | 936 |
| NlaIV | GGNNCC | 5 cut(s) | 989, 1158, 1278, 2820, 3345 |
| NmuCI | GTSAC | 4 cut(s) | 1646, 1864, 2431, 3043 |
| NsiI | ATGCAT | 3 cut(s) | 694, 1490, 2472 |
| NspI | RCATGY | 4 cut(s) | 1492, 1790, 2474, 2715 |
| NspV | TTCGAA | 1 cut(s) | 1569 |
| OliI | CACNNNNGTG | 1 cut(s) | 1757 |
| PaeI | GCATGC | 2 cut(s) | 1492, 2474 |
| PaeR7I | CTCGAG | 1 cut(s) | 2970 |
| PceI | AGGCCT | 2 cut(s) | 702, 758 |
| PciI | ACATGT | 1 cut(s) | 2711 |
| PctI | GAATGC | 3 cut(s) | 643, 2494, 2970 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1395, 2361, 3242 |
| PfeI | GAWTC | 7 cut(s) | 115, 963, 1004, 1270, 2242, 2657, 2912 |
| PflFI | GACNNNGTC | 1 cut(s) | 2417 |
| PfoI | TCCNGGA | 1 cut(s) | 589 |
| PkrI | GCNGC | 4 cut(s) | 2188, 2321, 3327, 3361 |
| PleI | GAGTC | 1 cut(s) | 3168 |
| PpsI | GAGTC | 1 cut(s) | 3168 |
| PpuMI | RGGWCCY | 3 cut(s) | 2744, 2819, 3344 |
| PscI | ACATGT | 1 cut(s) | 2711 |
| PshBI | ATTAAT | 1 cut(s) | 1595 |
| Psp124BI | GAGCTC | 1 cut(s) | 1974 |
| Psp1406I | AACGTT | 2 cut(s) | 1151, 1606 |
| Psp5II | RGGWCCY | 3 cut(s) | 2744, 2819, 3344 |
| Psp6I | CCWGG | 5 cut(s) | 27, 589, 3228, 3254, 3346 |
| PspGI | CCWGG | 5 cut(s) | 27, 589, 3228, 3254, 3346 |
| PspN4I | GGNNCC | 5 cut(s) | 989, 1158, 1278, 2820, 3345 |
| PspPI | GGNCC | 7 cut(s) | 1156, 1276, 1956, 2744, 2819, 3252, 3344 |
| PspPPI | RGGWCCY | 3 cut(s) | 2744, 2819, 3344 |
| PspXI | VCTCGAGB | 1 cut(s) | 2970 |
| PsuI | RGATCY | 5 cut(s) | 175, 586, 649, 749, 2141 |
| PsyI | GACNNNGTC | 1 cut(s) | 2417 |
| PvuII | CAGCTG | 1 cut(s) | 551 |
| RsaI | GTAC | 7 cut(s) | 493, 709, 989, 1474, 2198, 2328, 3221 |
| RsaNI | GTAC | 7 cut(s) | 492, 708, 988, 1473, 2197, 2327, 3220 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1757 |
| SacI | GAGCTC | 1 cut(s) | 1974 |
| SacII | CCGCGG | 1 cut(s) | 819 |
| SalI | GTCGAC | 1 cut(s) | 1845 |
| SatI | GCNGC | 4 cut(s) | 2187, 2320, 3326, 3360 |
| Sau96I | GGNCC | 7 cut(s) | 1156, 1276, 1956, 2744, 2819, 3252, 3344 |
| ScaI | AGTACT | 1 cut(s) | 2198 |
| SchI | GAGTC | 1 cut(s) | 3169 |
| ScrFI | CCNGG | 6 cut(s) | 29, 591, 2902, 3230, 3256, 3348 |
| SduI | GDGCHC | 2 cut(s) | 462, 1974 |
| SfcI | CTRYAG | 2 cut(s) | 2094, 3272 |
| Sfr274I | CTCGAG | 1 cut(s) | 2970 |
| Sfr303I | CCGCGG | 1 cut(s) | 819 |
| SfuI | TTCGAA | 1 cut(s) | 1569 |
| SgrBI | CCGCGG | 1 cut(s) | 819 |
| SinI | GGWCC | 6 cut(s) | 1156, 1956, 2744, 2819, 3252, 3344 |
| SlaI | CTCGAG | 1 cut(s) | 2970 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1757 |
| SmlI | CTYRAG | 6 cut(s) | 89, 1380, 1662, 2645, 2835, 2970 |
| SmoI | CTYRAG | 6 cut(s) | 89, 1380, 1662, 2645, 2835, 2970 |
| SpeI | ACTAGT | 1 cut(s) | 3080 |
| SphI | GCATGC | 2 cut(s) | 1492, 2474 |
| SseBI | AGGCCT | 2 cut(s) | 702, 758 |
| SsiI | CCGC | 7 cut(s) | 743, 816, 818, 892, 2320, 2411, 2537 |
| SspI | AATATT | 2 cut(s) | 1167, 2947 |
| SstI | GAGCTC | 1 cut(s) | 1974 |
| StuI | AGGCCT | 2 cut(s) | 702, 758 |
| StyD4I | CCNGG | 6 cut(s) | 27, 589, 2900, 3228, 3254, 3346 |
| StyI | CCWWGG | 5 cut(s) | 703, 753, 936, 2225, 2402 |
| TaaI | ACNGT | 1 cut(s) | 3136 |
| TatI | WGTACW | 4 cut(s) | 491, 2196, 2326, 3219 |
| TauI | GCSGC | 1 cut(s) | 2322 |
| TfiI | GAWTC | 7 cut(s) | 115, 963, 1004, 1270, 2242, 2657, 2912 |
| TscAI | CASTG | 2 cut(s) | 1272, 2013 |
| TseFI | GTSAC | 4 cut(s) | 1646, 1864, 2431, 3043 |
| TseI | GCWGC | 3 cut(s) | 2186, 3325, 3359 |
| Tsp45I | GTSAC | 4 cut(s) | 1646, 1864, 2431, 3043 |
| TspRI | CASTG | 2 cut(s) | 1272, 2013 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2417 |
| Vha464I | CTTAAG | 1 cut(s) | 2645 |
| VpaK11BI | GGWCC | 6 cut(s) | 1156, 1956, 2744, 2819, 3252, 3344 |
| VspI | ATTAAT | 1 cut(s) | 1595 |
| XapI | RAATTY | 9 cut(s) | 473, 507, 941, 998, 2135, 2258, 2442, 2528, 2787 |
| XceI | RCATGY | 4 cut(s) | 1492, 1790, 2474, 2715 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2350 |
| XhoI | CTCGAG | 1 cut(s) | 2970 |
| XmaJI | CCTAGG | 1 cut(s) | 703 |
| XmiI | GTMKAC | 3 cut(s) | 880, 1846, 3271 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1395, 2361, 3242 |
| ZraI | GACGTC | 2 cut(s) | 145, 916 |
| ZrmI | AGTACT | 1 cut(s) | 2198 |
| Zsp2I | ATGCAT | 3 cut(s) | 694, 1490, 2472 |