RNA splicing
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 44, 196 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 351 |
| AclWI | GGATC | 1 cut(s) | 789 |
| AcsI | RAATTY | 1 cut(s) | 56 |
| AfaI | GTAC | 1 cut(s) | 703 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 351, 588 |
| AgsI | TTSAA | 5 cut(s) | 53, 235, 758, 790, 805 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 145, 177 |
| AleI | CACNNNNGTG | 1 cut(s) | 497 |
| AluBI | AGCT | 6 cut(s) | 211, 451, 520, 546, 574, 659 |
| AluI | AGCT | 6 cut(s) | 211, 451, 520, 546, 574, 659 |
| Alw26I | GTCTC | 3 cut(s) | 141, 254, 283 |
| AlwI | GGATC | 1 cut(s) | 789 |
| Ama87I | CYCGRG | 1 cut(s) | 432 |
| ApeKI | GCWGC | 1 cut(s) | 101 |
| ApoI | RAATTY | 1 cut(s) | 56 |
| AseI | ATTAAT | 1 cut(s) | 774 |
| AspS9I | GGNCC | 1 cut(s) | 354 |
| AsuHPI | GGTGA | 3 cut(s) | 511, 847, 858 |
| AvaI | CYCGRG | 1 cut(s) | 432 |
| AvaII | GGWCC | 1 cut(s) | 354 |
| BaeGI | GKGCMC | 2 cut(s) | 72, 528 |
| BanI | GGYRCC | 2 cut(s) | 44, 196 |
| BbsI | GAAGAC | 2 cut(s) | 235, 801 |
| BbvI | GCAGC | 1 cut(s) | 88 |
| BccI | CCATC | 5 cut(s) | 88, 278, 345, 436, 620 |
| BceAI | ACGGC | 3 cut(s) | 50, 58, 309 |
| BclI | TGATCA | 1 cut(s) | 667 |
| BcoDI | GTCTC | 3 cut(s) | 141, 254, 283 |
| BfaI | CTAG | 1 cut(s) | 107 |
| BisI | GCNGC | 1 cut(s) | 102 |
| BlsI | GCNGC | 1 cut(s) | 103 |
| Bme18I | GGWCC | 1 cut(s) | 354 |
| BmeT110I | CYCGRG | 1 cut(s) | 432 |
| BmgT120I | GGNCC | 1 cut(s) | 354 |
| BmiI | GGNNCC | 2 cut(s) | 46, 198 |
| BmsI | GCATC | 2 cut(s) | 567, 752 |
| BpiI | GAAGAC | 2 cut(s) | 235, 801 |
| BpmI | CTGGAG | 2 cut(s) | 568, 645 |
| Bpu10I | CCTNAGC | 1 cut(s) | 358 |
| BpuEI | CTTGAG | 1 cut(s) | 227 |
| Bsa29I | ATCGAT | 1 cut(s) | 561 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 351, 588 |
| Bse3DI | GCAATG | 1 cut(s) | 745 |
| BseCI | ATCGAT | 1 cut(s) | 561 |
| BseGI | GGATG | 2 cut(s) | 356, 822 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 351, 588 |
| BseMI | GCAATG | 1 cut(s) | 745 |
| BseMII | CTCAG | 1 cut(s) | 198 |
| BseSI | GKGCMC | 2 cut(s) | 72, 528 |
| BseXI | GCAGC | 1 cut(s) | 88 |
| BshNI | GGYRCC | 2 cut(s) | 44, 196 |
| BshVI | ATCGAT | 1 cut(s) | 561 |
| BsiHKCI | CYCGRG | 1 cut(s) | 432 |
| BslFI | GGGAC | 1 cut(s) | 18 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 351, 588 |
| BsmAI | GTCTC | 3 cut(s) | 141, 254, 283 |
| BsmFI | GGGAC | 1 cut(s) | 18 |
| BsmI | GAATGC | 1 cut(s) | 726 |
| BsoBI | CYCGRG | 1 cut(s) | 432 |
| Bsp1286I | GDGCHC | 2 cut(s) | 72, 528 |
| Bsp143I | GATC | 3 cut(s) | 468, 667, 794 |
| BspCNI | CTCAG | 1 cut(s) | 197 |
| BspDI | ATCGAT | 1 cut(s) | 561 |
| BspLI | GGNNCC | 2 cut(s) | 46, 198 |
| BspPI | GGATC | 1 cut(s) | 789 |
| BspT107I | GGYRCC | 2 cut(s) | 44, 196 |
| BsrDI | GCAATG | 1 cut(s) | 745 |
| BssMI | GATC | 3 cut(s) | 468, 667, 794 |
| Bst4CI | ACNGT | 1 cut(s) | 496 |
| Bst6I | CTCTTC | 2 cut(s) | 286, 504 |
| BstDEI | CTNAG | 2 cut(s) | 184, 358 |
| BstF5I | GGATG | 2 cut(s) | 356, 822 |
| BstKTI | GATC | 3 cut(s) | 471, 670, 797 |
| BstMAI | GTCTC | 3 cut(s) | 141, 254, 283 |
| BstMBI | GATC | 3 cut(s) | 468, 667, 794 |
| BstNSI | RCATGY | 1 cut(s) | 393 |
| BstSLI | GKGCMC | 2 cut(s) | 72, 528 |
| BstV1I | GCAGC | 1 cut(s) | 88 |
| BstV2I | GAAGAC | 2 cut(s) | 235, 801 |
| BstX2I | RGATCY | 1 cut(s) | 794 |
| BstYI | RGATCY | 1 cut(s) | 794 |
| Bsu15I | ATCGAT | 1 cut(s) | 561 |
| BsuTUI | ATCGAT | 1 cut(s) | 561 |
| BtsCI | GGATG | 2 cut(s) | 356, 822 |
| BtsIMutI | CAGTG | 1 cut(s) | 492 |
| Cfr13I | GGNCC | 1 cut(s) | 354 |
| ClaI | ATCGAT | 1 cut(s) | 561 |
| Csp6I | GTAC | 1 cut(s) | 702 |
| CviAII | CATG | 4 cut(s) | 62, 390, 766, 813 |
| CviQI | GTAC | 1 cut(s) | 702 |
| DdeI | CTNAG | 2 cut(s) | 184, 358 |
| DpnI | GATC | 3 cut(s) | 470, 669, 796 |
| DpnII | GATC | 3 cut(s) | 468, 667, 794 |
| Eam1104I | CTCTTC | 2 cut(s) | 286, 504 |
| EarI | CTCTTC | 2 cut(s) | 286, 504 |
| Eco47I | GGWCC | 1 cut(s) | 354 |
| Eco88I | CYCGRG | 1 cut(s) | 432 |
| EcoRI | GAATTC | 1 cut(s) | 56 |
| EcoT22I | ATGCAT | 2 cut(s) | 395, 767 |
| FaeI | CATG | 4 cut(s) | 65, 393, 769, 816 |
| FaqI | GGGAC | 1 cut(s) | 18 |
| FatI | CATG | 4 cut(s) | 61, 389, 765, 812 |
| FbaI | TGATCA | 1 cut(s) | 667 |
| Fnu4HI | GCNGC | 1 cut(s) | 102 |
| FokI | GGATG | 2 cut(s) | 363, 829 |
| Fsp4HI | GCNGC | 1 cut(s) | 102 |
| FspBI | CTAG | 1 cut(s) | 107 |
| GluI | GCNGC | 1 cut(s) | 102 |
| GsuI | CTGGAG | 2 cut(s) | 568, 645 |
| Hin1II | CATG | 4 cut(s) | 65, 393, 769, 816 |
| HinfI | GANTC | 4 cut(s) | 6, 110, 477, 838 |
| HphI | GGTGA | 3 cut(s) | 511, 847, 858 |
| Hpy166II | GTNNAC | 1 cut(s) | 31 |
| Hpy188I | TCNGA | 2 cut(s) | 484, 784 |
| Hpy188III | TCNNGA | 8 cut(s) | 107, 232, 432, 434, 623, 636, 662, 671 |
| Hpy8I | GTNNAC | 1 cut(s) | 31 |
| Hpy99I | CGWCG | 1 cut(s) | 720 |
| HpyAV | CCTTC | 1 cut(s) | 210 |
| HpyCH4III | ACNGT | 1 cut(s) | 496 |
| HpyCH4V | TGCA | 5 cut(s) | 393, 558, 738, 743, 765 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 358 |
| Hsp92II | CATG | 4 cut(s) | 65, 393, 769, 816 |
| Ksp22I | TGATCA | 1 cut(s) | 667 |
| Kzo9I | GATC | 3 cut(s) | 468, 667, 794 |
| LmnI | GCTCC | 1 cut(s) | 664 |
| LpnPI | CCDG | 3 cut(s) | 179, 532, 675 |
| Lsp1109I | GCAGC | 1 cut(s) | 88 |
| LweI | GCATC | 2 cut(s) | 567, 752 |
| MaeI | CTAG | 1 cut(s) | 107 |
| MaeIII | GTNAC | 1 cut(s) | 177 |
| MalI | GATC | 3 cut(s) | 470, 669, 796 |
| MboI | GATC | 3 cut(s) | 468, 667, 794 |
| MboII | GAAGA | 9 cut(s) | 65, 92, 235, 273, 314, 317, 514, 521, 801 |
| MflI | RGATCY | 1 cut(s) | 794 |
| MhlI | GDGCHC | 2 cut(s) | 72, 528 |
| MluCI | AATT | 7 cut(s) | 56, 147, 153, 648, 771, 775, 800 |
| MnlI | CCTC | 5 cut(s) | 193, 295, 312, 406, 430 |
| Mph1103I | ATGCAT | 2 cut(s) | 395, 767 |
| MseI | TTAA | 5 cut(s) | 213, 326, 369, 774, 871 |
| MslI | CAYNNNNRTG | 1 cut(s) | 497 |
| Mva1269I | GAATGC | 1 cut(s) | 726 |
| NdeII | GATC | 3 cut(s) | 468, 667, 794 |
| NlaIII | CATG | 4 cut(s) | 65, 393, 769, 816 |
| NlaIV | GGNNCC | 2 cut(s) | 46, 198 |
| NsiI | ATGCAT | 2 cut(s) | 395, 767 |
| NspI | RCATGY | 1 cut(s) | 393 |
| OliI | CACNNNNGTG | 1 cut(s) | 497 |
| PaeR7I | CTCGAG | 1 cut(s) | 432 |
| PctI | GAATGC | 1 cut(s) | 726 |
| PfeI | GAWTC | 3 cut(s) | 110, 477, 838 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 351 |
| PkrI | GCNGC | 1 cut(s) | 103 |
| PshBI | ATTAAT | 1 cut(s) | 774 |
| PspN4I | GGNNCC | 2 cut(s) | 46, 198 |
| PspPI | GGNCC | 1 cut(s) | 354 |
| PsuI | RGATCY | 1 cut(s) | 794 |
| RsaI | GTAC | 1 cut(s) | 703 |
| RsaNI | GTAC | 1 cut(s) | 702 |
| RseI | CAYNNNNRTG | 1 cut(s) | 497 |
| SaqAI | TTAA | 5 cut(s) | 213, 326, 369, 774, 871 |
| SatI | GCNGC | 1 cut(s) | 102 |
| Sau3AI | GATC | 3 cut(s) | 468, 667, 794 |
| Sau96I | GGNCC | 1 cut(s) | 354 |
| SduI | GDGCHC | 2 cut(s) | 72, 528 |
| SfaNI | GCATC | 2 cut(s) | 567, 752 |
| Sfr274I | CTCGAG | 1 cut(s) | 432 |
| SinI | GGWCC | 1 cut(s) | 354 |
| SlaI | CTCGAG | 1 cut(s) | 432 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 497 |
| SmlI | CTYRAG | 2 cut(s) | 206, 432 |
| SmoI | CTYRAG | 2 cut(s) | 206, 432 |
| Sse9I | AATT | 7 cut(s) | 56, 147, 153, 648, 771, 775, 800 |
| SspMI | CTAG | 1 cut(s) | 107 |
| TaaI | ACNGT | 1 cut(s) | 496 |
| TaqI | TCGA | 4 cut(s) | 433, 475, 561, 718 |
| TasI | AATT | 7 cut(s) | 56, 147, 153, 648, 771, 775, 800 |
| TfiI | GAWTC | 3 cut(s) | 110, 477, 838 |
| Tru1I | TTAA | 5 cut(s) | 213, 326, 369, 774, 871 |
| Tru9I | TTAA | 5 cut(s) | 213, 326, 369, 774, 871 |
| TscAI | CASTG | 1 cut(s) | 499 |
| TseI | GCWGC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 2 cut(s) | 522, 801 |
| TspRI | CASTG | 1 cut(s) | 499 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 351 |
| VpaK11BI | GGWCC | 1 cut(s) | 354 |
| VspI | ATTAAT | 1 cut(s) | 774 |
| XapI | RAATTY | 1 cut(s) | 56 |
| XbaI | TCTAGA | 1 cut(s) | 106 |
| XceI | RCATGY | 1 cut(s) | 393 |
| XhoI | CTCGAG | 1 cut(s) | 432 |
| XspI | CTAG | 1 cut(s) | 107 |
| Zsp2I | ATGCAT | 2 cut(s) | 395, 767 |