transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 109, 406 |
| AccB1I | GGYRCC | 1 cut(s) | 163 |
| AciI | CCGC | 1 cut(s) | 492 |
| AcsI | RAATTY | 1 cut(s) | 277 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 550 |
| AgsI | TTSAA | 3 cut(s) | 146, 257, 541 |
| AluBI | AGCT | 3 cut(s) | 109, 125, 142 |
| AluI | AGCT | 3 cut(s) | 109, 125, 142 |
| Alw21I | GWGCWC | 1 cut(s) | 156 |
| Alw26I | GTCTC | 2 cut(s) | 333, 503 |
| Ama87I | CYCGRG | 2 cut(s) | 245, 328 |
| ApoI | RAATTY | 1 cut(s) | 277 |
| AvaI | CYCGRG | 2 cut(s) | 245, 328 |
| BanI | GGYRCC | 1 cut(s) | 163 |
| Bbv12I | GWGCWC | 1 cut(s) | 156 |
| BccI | CCATC | 2 cut(s) | 235, 351 |
| BciVI | GTATCC | 1 cut(s) | 409 |
| BclI | TGATCA | 1 cut(s) | 678 |
| BcoDI | GTCTC | 2 cut(s) | 333, 503 |
| BfaI | CTAG | 2 cut(s) | 131, 231 |
| BfuAI | ACCTGC | 2 cut(s) | 109, 406 |
| BfuI | GTATCC | 1 cut(s) | 409 |
| BisI | GCNGC | 1 cut(s) | 492 |
| BlsI | GCNGC | 1 cut(s) | 493 |
| BmeT110I | CYCGRG | 2 cut(s) | 245, 328 |
| BmiI | GGNNCC | 2 cut(s) | 165, 593 |
| BmsI | GCATC | 1 cut(s) | 523 |
| BpuEI | CTTGAG | 1 cut(s) | 431 |
| BsaI | GGTCTC | 1 cut(s) | 333 |
| BsaJI | CCNNGG | 1 cut(s) | 296 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 550 |
| Bse3DI | GCAATG | 1 cut(s) | 663 |
| BseDI | CCNNGG | 1 cut(s) | 296 |
| BseGI | GGATG | 1 cut(s) | 343 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 550 |
| BseMI | GCAATG | 1 cut(s) | 663 |
| BshNI | GGYRCC | 1 cut(s) | 163 |
| BsiHKAI | GWGCWC | 1 cut(s) | 156 |
| BsiHKCI | CYCGRG | 2 cut(s) | 245, 328 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 550 |
| BsmAI | GTCTC | 2 cut(s) | 333, 503 |
| Bso31I | GGTCTC | 1 cut(s) | 333 |
| BsoBI | CYCGRG | 2 cut(s) | 245, 328 |
| Bsp1286I | GDGCHC | 1 cut(s) | 156 |
| Bsp143I | GATC | 1 cut(s) | 678 |
| BspACI | CCGC | 1 cut(s) | 492 |
| BspHI | TCATGA | 1 cut(s) | 103 |
| BspLI | GGNNCC | 2 cut(s) | 165, 593 |
| BspMI | ACCTGC | 2 cut(s) | 109, 406 |
| BspT107I | GGYRCC | 1 cut(s) | 163 |
| BspTNI | GGTCTC | 1 cut(s) | 333 |
| BsrDI | GCAATG | 1 cut(s) | 663 |
| BssECI | CCNNGG | 1 cut(s) | 296 |
| BssMI | GATC | 1 cut(s) | 678 |
| BssT1I | CCWWGG | 1 cut(s) | 296 |
| Bst4CI | ACNGT | 1 cut(s) | 421 |
| BstC8I | GCNNGC | 1 cut(s) | 603 |
| BstDEI | CTNAG | 1 cut(s) | 623 |
| BstF5I | GGATG | 1 cut(s) | 343 |
| BstKTI | GATC | 1 cut(s) | 681 |
| BstMAI | GTCTC | 2 cut(s) | 333, 503 |
| BstMBI | GATC | 1 cut(s) | 678 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 115 |
| BsuI | GTATCC | 1 cut(s) | 409 |
| BtsCI | GGATG | 1 cut(s) | 343 |
| BveI | ACCTGC | 2 cut(s) | 109, 406 |
| Cac8I | GCNNGC | 1 cut(s) | 603 |
| CciI | TCATGA | 1 cut(s) | 103 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 391, 426 |
| CviAII | CATG | 4 cut(s) | 104, 160, 357, 682 |
| CviJI | RGCY | 8 cut(s) | 109, 125, 142, 239, 434, 491, 570, 605 |
| CviKI_1 | RGCY | 8 cut(s) | 109, 125, 142, 239, 434, 491, 570, 605 |
| DdeI | CTNAG | 1 cut(s) | 623 |
| DpnI | GATC | 1 cut(s) | 680 |
| DpnII | GATC | 1 cut(s) | 678 |
| Eco130I | CCWWGG | 1 cut(s) | 296 |
| Eco31I | GGTCTC | 1 cut(s) | 333 |
| Eco88I | CYCGRG | 2 cut(s) | 245, 328 |
| EcoRI | GAATTC | 1 cut(s) | 277 |
| EcoT14I | CCWWGG | 1 cut(s) | 296 |
| ErhI | CCWWGG | 1 cut(s) | 296 |
| FaeI | CATG | 4 cut(s) | 107, 163, 360, 685 |
| FatI | CATG | 4 cut(s) | 103, 159, 356, 681 |
| FbaI | TGATCA | 1 cut(s) | 678 |
| Fnu4HI | GCNGC | 1 cut(s) | 492 |
| FokI | GGATG | 1 cut(s) | 330 |
| Fsp4HI | GCNGC | 1 cut(s) | 492 |
| FspBI | CTAG | 2 cut(s) | 131, 231 |
| GluI | GCNGC | 1 cut(s) | 492 |
| Hin1II | CATG | 4 cut(s) | 107, 163, 360, 685 |
| HindIII | AAGCTT | 1 cut(s) | 140 |
| HinfI | GANTC | 3 cut(s) | 10, 81, 146 |
| Hpy166II | GTNNAC | 1 cut(s) | 268 |
| Hpy188III | TCNNGA | 4 cut(s) | 7, 104, 245, 257 |
| Hpy8I | GTNNAC | 1 cut(s) | 268 |
| HpyCH4III | ACNGT | 1 cut(s) | 421 |
| HpyCH4V | TGCA | 4 cut(s) | 118, 195, 448, 530 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 115 |
| HpyF3I | CTNAG | 1 cut(s) | 623 |
| Hsp92II | CATG | 4 cut(s) | 107, 163, 360, 685 |
| Ksp22I | TGATCA | 1 cut(s) | 678 |
| Kzo9I | GATC | 1 cut(s) | 678 |
| LpnPI | CCDG | 2 cut(s) | 104, 411 |
| LweI | GCATC | 1 cut(s) | 523 |
| MaeI | CTAG | 2 cut(s) | 131, 231 |
| MaeIII | GTNAC | 1 cut(s) | 663 |
| MalI | GATC | 1 cut(s) | 680 |
| MboI | GATC | 1 cut(s) | 678 |
| MboII | GAAGA | 1 cut(s) | 373 |
| MfeI | CAATTG | 1 cut(s) | 515 |
| MhlI | GDGCHC | 1 cut(s) | 156 |
| MluCI | AATT | 4 cut(s) | 277, 374, 449, 515 |
| MlyI | GAGTC | 2 cut(s) | 19, 90 |
| MmeI | TCCRAC | 5 cut(s) | 58, 314, 412, 478, 502 |
| MnlI | CCTC | 3 cut(s) | 229, 406, 544 |
| MseI | TTAA | 2 cut(s) | 62, 423 |
| MunI | CAATTG | 1 cut(s) | 515 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 115 |
| NdeII | GATC | 1 cut(s) | 678 |
| NlaIII | CATG | 4 cut(s) | 107, 163, 360, 685 |
| NlaIV | GGNNCC | 2 cut(s) | 165, 593 |
| PagI | TCATGA | 1 cut(s) | 103 |
| PfeI | GAWTC | 1 cut(s) | 146 |
| PkrI | GCNGC | 1 cut(s) | 493 |
| PleI | GAGTC | 2 cut(s) | 18, 89 |
| PpsI | GAGTC | 2 cut(s) | 18, 89 |
| PspN4I | GGNNCC | 2 cut(s) | 165, 593 |
| SaqAI | TTAA | 2 cut(s) | 62, 423 |
| SatI | GCNGC | 1 cut(s) | 492 |
| Sau3AI | GATC | 1 cut(s) | 678 |
| SchI | GAGTC | 2 cut(s) | 19, 90 |
| SduI | GDGCHC | 1 cut(s) | 156 |
| SetI | ASST | 9 cut(s) | 111, 123, 127, 132, 144, 273, 354, 400, 555 |
| SfaNI | GCATC | 1 cut(s) | 523 |
| SmlI | CTYRAG | 2 cut(s) | 5, 410 |
| SmoI | CTYRAG | 2 cut(s) | 5, 410 |
| Sse9I | AATT | 4 cut(s) | 277, 374, 449, 515 |
| SsiI | CCGC | 1 cut(s) | 492 |
| SspMI | CTAG | 2 cut(s) | 131, 231 |
| StyI | CCWWGG | 1 cut(s) | 296 |
| TaaI | ACNGT | 1 cut(s) | 421 |
| TasI | AATT | 4 cut(s) | 277, 374, 449, 515 |
| TauI | GCSGC | 1 cut(s) | 494 |
| TfiI | GAWTC | 1 cut(s) | 146 |
| Tru1I | TTAA | 2 cut(s) | 62, 423 |
| Tru9I | TTAA | 2 cut(s) | 62, 423 |
| TspDTI | ATGAA | 6 cut(s) | 102, 192, 290, 345, 674, 686 |
| TspGWI | ACGGA | 1 cut(s) | 139 |
| XapI | RAATTY | 1 cut(s) | 277 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 551 |
| XspI | CTAG | 2 cut(s) | 131, 231 |