protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 171 - 267 | 1e-16 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 304 - 401 | 1.7e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 328 - 431 | 5.7e-38 | RNase H-like domain found in reverse transcriptase |
| rve | PF00665 | 509 - 602 | 6e-17 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 812, 1677 |
| Acc65I | GGTACC | 1 cut(s) | 1187 |
| AccB1I | GGYRCC | 2 cut(s) | 484, 1187 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 369, 766 |
| AccI | GTMKAC | 1 cut(s) | 261 |
| AccIII | TCCGGA | 1 cut(s) | 979 |
| AciI | CCGC | 2 cut(s) | 360, 380 |
| AclI | AACGTT | 1 cut(s) | 718 |
| AclWI | GGATC | 5 cut(s) | 458, 1267, 1280, 1719, 1732 |
| AcoI | YGGCCR | 1 cut(s) | 814 |
| AcsI | RAATTY | 3 cut(s) | 676, 858, 1449 |
| AcuI | CTGAAG | 1 cut(s) | 186 |
| AcvI | CACGTG | 1 cut(s) | 1424 |
| AfaI | GTAC | 3 cut(s) | 586, 741, 1189 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 146, 369, 427, 766 |
| AflII | CTTAAG | 1 cut(s) | 941 |
| AhlI | ACTAGT | 1 cut(s) | 1811 |
| AjnI | CCWGG | 2 cut(s) | 210, 580 |
| Alw21I | GWGCWC | 3 cut(s) | 1140, 1429, 2010 |
| Alw26I | GTCTC | 5 cut(s) | 124, 272, 421, 859, 1834 |
| AlwI | GGATC | 5 cut(s) | 458, 1267, 1280, 1719, 1732 |
| Aor13HI | TCCGGA | 1 cut(s) | 979 |
| AoxI | GGCC | 4 cut(s) | 213, 814, 1626, 1917 |
| ApeKI | GCWGC | 2 cut(s) | 1217, 2054 |
| ApoI | RAATTY | 3 cut(s) | 676, 858, 1449 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 783, 815 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2033 |
| Asp718I | GGTACC | 1 cut(s) | 1187 |
| AspA2I | CCTAGG | 1 cut(s) | 1471 |
| AspS9I | GGNCC | 7 cut(s) | 208, 214, 987, 1475, 1550, 1890, 1917 |
| AsuHPI | GGTGA | 4 cut(s) | 13, 55, 1793, 1947 |
| AvaII | GGWCC | 5 cut(s) | 208, 987, 1475, 1550, 1890 |
| AvrII | CCTAGG | 1 cut(s) | 1471 |
| BaeGI | GKGCMC | 3 cut(s) | 438, 489, 900 |
| BaeI | ACNNNNGTAYC | 3 cut(s) | 36, 1179, 1212 |
| BalI | TGGCCA | 1 cut(s) | 816 |
| BamHI | GGATCC | 2 cut(s) | 1272, 1724 |
| BanI | GGYRCC | 2 cut(s) | 484, 1187 |
| BanII | GRGCYC | 1 cut(s) | 1140 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 245, 277 |
| BbrPI | CACGTG | 1 cut(s) | 1424 |
| BbsI | GAAGAC | 1 cut(s) | 1868 |
| Bbv12I | GWGCWC | 3 cut(s) | 1140, 1429, 2010 |
| BbvCI | CCTCAGC | 1 cut(s) | 1824 |
| BbvI | GCAGC | 2 cut(s) | 1229, 2066 |
| BccI | CCATC | 5 cut(s) | 363, 974, 1082, 1263, 1712 |
| BciT130I | CCWGG | 2 cut(s) | 212, 582 |
| BciVI | GTATCC | 1 cut(s) | 4 |
| BclI | TGATCA | 1 cut(s) | 2107 |
| BcoDI | GTCTC | 5 cut(s) | 124, 272, 421, 859, 1834 |
| BcuI | ACTAGT | 1 cut(s) | 1811 |
| BfaI | CTAG | 7 cut(s) | 788, 1398, 1472, 1479, 1632, 1701, 1812 |
| BfmI | CTRYAG | 2 cut(s) | 547, 1921 |
| BfrI | CTTAAG | 1 cut(s) | 941 |
| BfuAI | ACCTGC | 2 cut(s) | 812, 1677 |
| BfuI | GTATCC | 1 cut(s) | 4 |
| BisI | GCNGC | 2 cut(s) | 1218, 2055 |
| BlnI | CCTAGG | 1 cut(s) | 1471 |
| BlsI | GCNGC | 2 cut(s) | 1219, 2056 |
| Bme1390I | CCNGG | 2 cut(s) | 212, 582 |
| Bme18I | GGWCC | 5 cut(s) | 208, 987, 1475, 1550, 1890 |
| BmgT120I | GGNCC | 7 cut(s) | 208, 214, 987, 1475, 1550, 1890, 1917 |
| BmiI | GGNNCC | 6 cut(s) | 216, 486, 1189, 1274, 1551, 1726 |
| BmrFI | CCNGG | 2 cut(s) | 212, 582 |
| BmrI | ACTGGG | 1 cut(s) | 416 |
| BmsI | GCATC | 5 cut(s) | 143, 1003, 1093, 1897, 2041 |
| BmuI | ACTGGG | 1 cut(s) | 416 |
| BpiI | GAAGAC | 1 cut(s) | 1868 |
| BpmI | CTGGAG | 3 cut(s) | 564, 722, 869 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1824 |
| BpuEI | CTTGAG | 6 cut(s) | 50, 149, 245, 1072, 1181, 1366 |
| BsaAI | YACGTR | 1 cut(s) | 1424 |
| BsaI | GGTCTC | 4 cut(s) | 272, 421, 859, 1834 |
| BsaJI | CCNNGG | 4 cut(s) | 811, 1256, 1364, 1471 |
| BsaWI | WCCGGW | 1 cut(s) | 979 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 146, 369, 427, 766 |
| Bse1I | ACTGG | 3 cut(s) | 422, 486, 1892 |
| Bse3DI | GCAATG | 1 cut(s) | 2110 |
| BseAI | TCCGGA | 1 cut(s) | 979 |
| BseBI | CCWGG | 2 cut(s) | 212, 582 |
| BseDI | CCNNGG | 4 cut(s) | 811, 1256, 1364, 1471 |
| BseGI | GGATG | 5 cut(s) | 374, 658, 898, 1912, 2056 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 146, 369, 427, 766 |
| BseMI | GCAATG | 1 cut(s) | 2110 |
| BseMII | CTCAG | 2 cut(s) | 1815, 2114 |
| BseNI | ACTGG | 3 cut(s) | 422, 486, 1892 |
| BseRI | GAGGAG | 2 cut(s) | 113, 2108 |
| BseSI | GKGCMC | 3 cut(s) | 438, 489, 900 |
| BseXI | GCAGC | 2 cut(s) | 1229, 2066 |
| BseYI | CCCAGC | 2 cut(s) | 411, 2057 |
| BsgI | GTGCAG | 1 cut(s) | 288 |
| BshFI | GGCC | 4 cut(s) | 215, 816, 1628, 1919 |
| BshNI | GGYRCC | 2 cut(s) | 484, 1187 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1140, 1429, 2010 |
| BsiSI | CCGG | 1 cut(s) | 980 |
| BslFI | GGGAC | 2 cut(s) | 284, 1563 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 146, 369, 427, 766 |
| BsmAI | GTCTC | 5 cut(s) | 124, 272, 421, 859, 1834 |
| BsmBI | CGTCTC | 1 cut(s) | 124 |
| BsmFI | GGGAC | 2 cut(s) | 284, 1563 |
| BsmI | GAATGC | 2 cut(s) | 472, 1701 |
| BsnI | GGCC | 4 cut(s) | 215, 816, 1628, 1919 |
| Bso31I | GGTCTC | 4 cut(s) | 272, 421, 859, 1834 |
| Bsp1286I | GDGCHC | 6 cut(s) | 438, 489, 900, 1140, 1429, 2010 |
| Bsp13I | TCCGGA | 1 cut(s) | 979 |
| Bsp143I | GATC | 6 cut(s) | 450, 1272, 1483, 1724, 2107, 2119 |
| Bsp19I | CCATGG | 1 cut(s) | 1364 |
| BspACI | CCGC | 2 cut(s) | 360, 380 |
| BspANI | GGCC | 4 cut(s) | 215, 816, 1628, 1919 |
| BspCNI | CTCAG | 2 cut(s) | 1816, 2115 |
| BspEI | TCCGGA | 1 cut(s) | 979 |
| BspLI | GGNNCC | 6 cut(s) | 216, 486, 1189, 1274, 1551, 1726 |
| BspMI | ACCTGC | 2 cut(s) | 812, 1677 |
| BspPI | GGATC | 5 cut(s) | 458, 1267, 1280, 1719, 1732 |
| BspT107I | GGYRCC | 2 cut(s) | 484, 1187 |
| BspTI | CTTAAG | 1 cut(s) | 941 |
| BspTNI | GGTCTC | 4 cut(s) | 272, 421, 859, 1834 |
| BsrDI | GCAATG | 1 cut(s) | 2110 |
| BsrI | ACTGG | 3 cut(s) | 422, 486, 1892 |
| BssECI | CCNNGG | 4 cut(s) | 811, 1256, 1364, 1471 |
| BssMI | GATC | 6 cut(s) | 450, 1272, 1483, 1724, 2107, 2119 |
| BssT1I | CCWWGG | 4 cut(s) | 811, 1256, 1364, 1471 |
| Bst2UI | CCWGG | 2 cut(s) | 212, 582 |
| Bst4CI | ACNGT | 4 cut(s) | 457, 499, 1513, 1867 |
| Bst6I | CTCTTC | 3 cut(s) | 243, 318, 1757 |
| BstAFI | CTTAAG | 1 cut(s) | 941 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1983 |
| BstBAI | YACGTR | 1 cut(s) | 1424 |
| BstC8I | GCNNGC | 1 cut(s) | 1821 |
| BstDEI | CTNAG | 4 cut(s) | 16, 1647, 1824, 2123 |
| BstDSI | CCRYGG | 1 cut(s) | 1364 |
| BstF5I | GGATG | 5 cut(s) | 374, 658, 898, 1912, 2056 |
| BstKTI | GATC | 6 cut(s) | 453, 1275, 1486, 1727, 2110, 2122 |
| BstMAI | GTCTC | 5 cut(s) | 124, 272, 421, 859, 1834 |
| BstMBI | GATC | 6 cut(s) | 450, 1272, 1483, 1724, 2107, 2119 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1034, 1916, 1983, 2021 |
| BstNI | CCWGG | 2 cut(s) | 212, 582 |
| BstSCI | CCNGG | 2 cut(s) | 210, 580 |
| BstSFI | CTRYAG | 2 cut(s) | 547, 1921 |
| BstSLI | GKGCMC | 3 cut(s) | 438, 489, 900 |
| BstV1I | GCAGC | 2 cut(s) | 1229, 2066 |
| BstV2I | GAAGAC | 1 cut(s) | 1868 |
| BstX2I | RGATCY | 2 cut(s) | 1272, 1724 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1615 |
| BstYI | RGATCY | 2 cut(s) | 1272, 1724 |
| BsuI | GTATCC | 1 cut(s) | 4 |
| BsuRI | GGCC | 4 cut(s) | 215, 816, 1628, 1919 |
| BtgI | CCRYGG | 1 cut(s) | 1364 |
| BtsCI | GGATG | 5 cut(s) | 374, 658, 898, 1912, 2056 |
| BtsI | GCAGTG | 1 cut(s) | 1599 |
| BtsIMutI | CAGTG | 3 cut(s) | 210, 453, 1599 |
| BveI | ACCTGC | 2 cut(s) | 812, 1677 |
| Cac8I | GCNNGC | 1 cut(s) | 1821 |
| Cfr13I | GGNCC | 7 cut(s) | 208, 214, 987, 1475, 1550, 1890, 1917 |
| Csp6I | GTAC | 3 cut(s) | 585, 740, 1188 |
| CviQI | GTAC | 3 cut(s) | 585, 740, 1188 |
| DdeI | CTNAG | 4 cut(s) | 16, 1647, 1824, 2123 |
| DpnI | GATC | 6 cut(s) | 452, 1274, 1485, 1726, 2109, 2121 |
| DpnII | GATC | 6 cut(s) | 450, 1272, 1483, 1724, 2107, 2119 |
| EaeI | YGGCCR | 1 cut(s) | 814 |
| Eam1104I | CTCTTC | 3 cut(s) | 243, 318, 1757 |
| EarI | CTCTTC | 3 cut(s) | 243, 318, 1757 |
| EciI | GGCGGA | 1 cut(s) | 395 |
| Ecl136II | GAGCTC | 1 cut(s) | 1138 |
| Eco130I | CCWWGG | 4 cut(s) | 811, 1256, 1364, 1471 |
| Eco24I | GRGCYC | 1 cut(s) | 1140 |
| Eco31I | GGTCTC | 4 cut(s) | 272, 421, 859, 1834 |
| Eco47I | GGWCC | 5 cut(s) | 208, 987, 1475, 1550, 1890 |
| Eco53kI | GAGCTC | 1 cut(s) | 1138 |
| Eco57I | CTGAAG | 1 cut(s) | 186 |
| Eco72I | CACGTG | 1 cut(s) | 1424 |
| EcoICRI | GAGCTC | 1 cut(s) | 1138 |
| EcoO109I | RGGNCCY | 3 cut(s) | 214, 1475, 1550 |
| EcoRII | CCWGG | 2 cut(s) | 210, 580 |
| EcoT14I | CCWWGG | 4 cut(s) | 811, 1256, 1364, 1471 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 1140 |
| ErhI | CCWWGG | 4 cut(s) | 811, 1256, 1364, 1471 |
| Esp3I | CGTCTC | 1 cut(s) | 124 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 266, 298, 1125, 1157 |
| FaqI | GGGAC | 2 cut(s) | 284, 1563 |
| FbaI | TGATCA | 1 cut(s) | 2107 |
| FblI | GTMKAC | 1 cut(s) | 261 |
| Fnu4HI | GCNGC | 2 cut(s) | 1218, 2055 |
| FokI | GGATG | 5 cut(s) | 381, 665, 905, 1919, 2063 |
| FriOI | GRGCYC | 1 cut(s) | 1140 |
| Fsp4HI | GCNGC | 2 cut(s) | 1218, 2055 |
| FspBI | CTAG | 7 cut(s) | 788, 1398, 1472, 1479, 1632, 1701, 1812 |
| GluI | GCNGC | 2 cut(s) | 1218, 2055 |
| GsaI | CCCAGC | 2 cut(s) | 415, 2061 |
| GsuI | CTGGAG | 3 cut(s) | 564, 722, 869 |
| HaeIII | GGCC | 4 cut(s) | 215, 816, 1628, 1919 |
| HapII | CCGG | 1 cut(s) | 980 |
| HincII | GTYRAC | 1 cut(s) | 954 |
| HindII | GTYRAC | 1 cut(s) | 954 |
| HindIII | AAGCTT | 3 cut(s) | 927, 938, 2013 |
| HinfI | GANTC | 7 cut(s) | 60, 313, 393, 1093, 1348, 1405, 1643 |
| HpaII | CCGG | 1 cut(s) | 980 |
| HphI | GGTGA | 4 cut(s) | 13, 55, 1793, 1947 |
| Hpy166II | GTNNAC | 4 cut(s) | 262, 954, 1597, 1870 |
| Hpy188I | TCNGA | 9 cut(s) | 73, 566, 594, 619, 1021, 1268, 1743, 1842, 2124 |
| Hpy188III | TCNNGA | 9 cut(s) | 242, 701, 864, 886, 923, 980, 1398, 1409, 1759 |
| Hpy8I | GTNNAC | 4 cut(s) | 262, 954, 1597, 1870 |
| HpyCH4III | ACNGT | 4 cut(s) | 457, 499, 1513, 1867 |
| HpyCH4IV | ACGT | 5 cut(s) | 117, 553, 718, 1329, 1423 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1034, 1916, 1983, 2021 |
| HpyF3I | CTNAG | 4 cut(s) | 16, 1647, 1824, 2123 |
| HpySE526I | ACGT | 5 cut(s) | 117, 553, 718, 1329, 1423 |
| Kpn2I | TCCGGA | 1 cut(s) | 979 |
| KpnI | GGTACC | 1 cut(s) | 1191 |
| Ksp22I | TGATCA | 1 cut(s) | 2107 |
| Kzo9I | GATC | 6 cut(s) | 450, 1272, 1483, 1724, 2107, 2119 |
| LmnI | GCTCC | 4 cut(s) | 583, 1034, 1143, 2005 |
| Lsp1109I | GCAGC | 2 cut(s) | 1229, 2066 |
| LweI | GCATC | 5 cut(s) | 143, 1003, 1093, 1897, 2041 |
| MaeI | CTAG | 7 cut(s) | 788, 1398, 1472, 1479, 1632, 1701, 1812 |
| MaeII | ACGT | 5 cut(s) | 117, 553, 718, 1329, 1423 |
| MaeIII | GTNAC | 8 cut(s) | 19, 61, 499, 972, 1195, 1419, 1774, 1953 |
| MalI | GATC | 6 cut(s) | 452, 1274, 1485, 1726, 2109, 2121 |
| MboI | GATC | 6 cut(s) | 450, 1272, 1483, 1724, 2107, 2119 |
| MboII | GAAGA | 5 cut(s) | 230, 335, 1774, 1873, 2141 |
| MfeI | CAATTG | 1 cut(s) | 2078 |
| MflI | RGATCY | 2 cut(s) | 1272, 1724 |
| MhlI | GDGCHC | 6 cut(s) | 438, 489, 900, 1140, 1429, 2010 |
| MlsI | TGGCCA | 1 cut(s) | 816 |
| MluNI | TGGCCA | 1 cut(s) | 816 |
| MlyI | GAGTC | 5 cut(s) | 69, 307, 1087, 1357, 1637 |
| MmeI | TCCRAC | 2 cut(s) | 1012, 1983 |
| Mox20I | TGGCCA | 1 cut(s) | 816 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroI | TCCGGA | 1 cut(s) | 979 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2033 |
| MscI | TGGCCA | 1 cut(s) | 816 |
| MseI | TTAA | 4 cut(s) | 693, 744, 942, 1845 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1511, 1949, 2045, 2115 |
| Msp20I | TGGCCA | 1 cut(s) | 816 |
| MspA1I | CMGCKG | 1 cut(s) | 2057 |
| MspCI | CTTAAG | 1 cut(s) | 941 |
| MspI | CCGG | 1 cut(s) | 980 |
| MspR9I | CCNGG | 2 cut(s) | 212, 582 |
| MunI | CAATTG | 1 cut(s) | 2078 |
| Mva1269I | GAATGC | 2 cut(s) | 472, 1701 |
| MvaI | CCWGG | 2 cut(s) | 212, 582 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1034, 1916, 1983, 2021 |
| NcoI | CCATGG | 1 cut(s) | 1364 |
| NdeII | GATC | 6 cut(s) | 450, 1272, 1483, 1724, 2107, 2119 |
| NlaIV | GGNNCC | 6 cut(s) | 216, 486, 1189, 1274, 1551, 1726 |
| NmuCI | GTSAC | 6 cut(s) | 19, 61, 499, 1419, 1774, 1953 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PctI | GAATGC | 2 cut(s) | 472, 1701 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2033 |
| PfeI | GAWTC | 2 cut(s) | 393, 1405 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 369, 766 |
| PkrI | GCNGC | 2 cut(s) | 1219, 2056 |
| PleI | GAGTC | 5 cut(s) | 68, 307, 1087, 1356, 1637 |
| PmaCI | CACGTG | 1 cut(s) | 1424 |
| PmlI | CACGTG | 1 cut(s) | 1424 |
| PpsI | GAGTC | 5 cut(s) | 68, 307, 1087, 1356, 1637 |
| Ppu21I | YACGTR | 1 cut(s) | 1424 |
| PpuMI | RGGWCCY | 2 cut(s) | 1475, 1550 |
| Psp124BI | GAGCTC | 1 cut(s) | 1140 |
| Psp1406I | AACGTT | 1 cut(s) | 718 |
| Psp5II | RGGWCCY | 2 cut(s) | 1475, 1550 |
| Psp6I | CCWGG | 2 cut(s) | 210, 580 |
| PspCI | CACGTG | 1 cut(s) | 1424 |
| PspFI | CCCAGC | 2 cut(s) | 411, 2057 |
| PspGI | CCWGG | 2 cut(s) | 210, 580 |
| PspN4I | GGNNCC | 6 cut(s) | 216, 486, 1189, 1274, 1551, 1726 |
| PspPI | GGNCC | 7 cut(s) | 208, 214, 987, 1475, 1550, 1890, 1917 |
| PspPPI | RGGWCCY | 2 cut(s) | 1475, 1550 |
| PsuI | RGATCY | 2 cut(s) | 1272, 1724 |
| PvuII | CAGCTG | 1 cut(s) | 2057 |
| RsaI | GTAC | 3 cut(s) | 586, 741, 1189 |
| RsaNI | GTAC | 3 cut(s) | 585, 740, 1188 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1511, 1949, 2045, 2115 |
| SacI | GAGCTC | 1 cut(s) | 1140 |
| SaqAI | TTAA | 4 cut(s) | 693, 744, 942, 1845 |
| SatI | GCNGC | 2 cut(s) | 1218, 2055 |
| Sau3AI | GATC | 6 cut(s) | 450, 1272, 1483, 1724, 2107, 2119 |
| Sau96I | GGNCC | 7 cut(s) | 208, 214, 987, 1475, 1550, 1890, 1917 |
| SchI | GAGTC | 5 cut(s) | 69, 307, 1087, 1357, 1637 |
| ScrFI | CCNGG | 2 cut(s) | 212, 582 |
| SduI | GDGCHC | 6 cut(s) | 438, 489, 900, 1140, 1429, 2010 |
| SfaNI | GCATC | 5 cut(s) | 143, 1003, 1093, 1897, 2041 |
| SfcI | CTRYAG | 2 cut(s) | 547, 1921 |
| SinI | GGWCC | 5 cut(s) | 208, 987, 1475, 1550, 1890 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1511, 1949, 2045, 2115 |
| SmlI | CTYRAG | 7 cut(s) | 29, 128, 224, 941, 1087, 1160, 1345 |
| SmoI | CTYRAG | 7 cut(s) | 29, 128, 224, 941, 1087, 1160, 1345 |
| SpeI | ACTAGT | 1 cut(s) | 1811 |
| SsiI | CCGC | 2 cut(s) | 360, 380 |
| SspMI | CTAG | 7 cut(s) | 788, 1398, 1472, 1479, 1632, 1701, 1812 |
| SstI | GAGCTC | 1 cut(s) | 1140 |
| StyD4I | CCNGG | 2 cut(s) | 210, 580 |
| StyI | CCWWGG | 4 cut(s) | 811, 1256, 1364, 1471 |
| TaaI | ACNGT | 4 cut(s) | 457, 499, 1513, 1867 |
| TaiI | ACGT | 5 cut(s) | 120, 556, 721, 1332, 1426 |
| TaqI | TCGA | 2 cut(s) | 863, 1963 |
| TatI | WGTACW | 1 cut(s) | 739 |
| TfiI | GAWTC | 2 cut(s) | 393, 1405 |
| Tru1I | TTAA | 4 cut(s) | 693, 744, 942, 1845 |
| Tru9I | TTAA | 4 cut(s) | 693, 744, 942, 1845 |
| TscAI | CASTG | 3 cut(s) | 210, 460, 1599 |
| TseFI | GTSAC | 6 cut(s) | 19, 61, 499, 1419, 1774, 1953 |
| TseI | GCWGC | 2 cut(s) | 1217, 2054 |
| Tsp45I | GTSAC | 6 cut(s) | 19, 61, 499, 1419, 1774, 1953 |
| TspDTI | ATGAA | 6 cut(s) | 637, 829, 1127, 1534, 1551, 2054 |
| TspRI | CASTG | 3 cut(s) | 210, 460, 1599 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 369, 766 |
| Vha464I | CTTAAG | 1 cut(s) | 941 |
| VpaK11BI | GGWCC | 5 cut(s) | 208, 987, 1475, 1550, 1890 |
| XapI | RAATTY | 3 cut(s) | 676, 858, 1449 |
| XbaI | TCTAGA | 1 cut(s) | 1397 |
| XmaJI | CCTAGG | 1 cut(s) | 1471 |
| XmiI | GTMKAC | 1 cut(s) | 261 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2033 |
| XspI | CTAG | 7 cut(s) | 788, 1398, 1472, 1479, 1632, 1701, 1812 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |