transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 5140 |
| AatII | GACGTC | 1 cut(s) | 5144 |
| Acc16I | TGCGCA | 1 cut(s) | 1422 |
| Acc36I | ACCTGC | 1 cut(s) | 962 |
| AccB1I | GGYRCC | 2 cut(s) | 1378, 1452 |
| AccI | GTMKAC | 3 cut(s) | 37, 478, 1237 |
| AccII | CGCG | 1 cut(s) | 5123 |
| AciI | CCGC | 4 cut(s) | 2389, 2419, 3069, 5026 |
| AclI | AACGTT | 1 cut(s) | 3513 |
| AclWI | GGATC | 5 cut(s) | 137, 1712, 2200, 4104, 5143 |
| AcoI | YGGCCR | 1 cut(s) | 2931 |
| AcyI | GRCGYC | 4 cut(s) | 1379, 1453, 3352, 5141 |
| AdeI | CACNNNGTG | 1 cut(s) | 1388 |
| AfaI | GTAC | 7 cut(s) | 262, 1190, 1559, 2119, 2545, 2728, 3621 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 1462, 2105, 2656, 4566, 5067, 5082, 5083, 5116 |
| AflIII | ACRYGT | 3 cut(s) | 1812, 2845, 4118 |
| AgeI | ACCGGT | 1 cut(s) | 993 |
| AjnI | CCWGG | 5 cut(s) | 256, 2487, 4650, 4966, 5115 |
| Alw21I | GWGCWC | 2 cut(s) | 2017, 5201 |
| Alw26I | GTCTC | 3 cut(s) | 556, 2075, 3548 |
| AlwI | GGATC | 5 cut(s) | 137, 1712, 2200, 4104, 5143 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2822 |
| Ama87I | CYCGRG | 3 cut(s) | 4091, 5060, 5077 |
| ApaI | GGGCCC | 1 cut(s) | 5061 |
| ApeKI | GCWGC | 8 cut(s) | 2246, 2275, 3066, 3172, 3607, 3694, 4396, 4556 |
| AseI | ATTAAT | 4 cut(s) | 2946, 2957, 3144, 4586 |
| AsiGI | ACCGGT | 1 cut(s) | 993 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2052 |
| AspA2I | CCTAGG | 2 cut(s) | 20, 4333 |
| AspLEI | GCGC | 4 cut(s) | 1381, 1423, 1455, 4396 |
| AspS9I | GGNCC | 8 cut(s) | 710, 733, 784, 4790, 5057, 5058, 5070, 5080 |
| AsuC2I | CCSGG | 5 cut(s) | 5061, 5062, 5078, 5079, 5084 |
| AsuHPI | GGTGA | 7 cut(s) | 656, 983, 1918, 2490, 4535, 4744, 5158 |
| AsuII | TTCGAA | 3 cut(s) | 979, 1171, 1797 |
| AvaI | CYCGRG | 3 cut(s) | 4091, 5060, 5077 |
| AvaII | GGWCC | 2 cut(s) | 733, 5070 |
| AvrII | CCTAGG | 2 cut(s) | 20, 4333 |
| AxyI | CCTNAGG | 2 cut(s) | 2502, 3243 |
| BaeGI | GKGCMC | 2 cut(s) | 4442, 5061 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 252, 285 |
| BalI | TGGCCA | 1 cut(s) | 2933 |
| BanI | GGYRCC | 2 cut(s) | 1378, 1452 |
| BanII | GRGCYC | 3 cut(s) | 2017, 5061, 5201 |
| BauI | CACGAG | 4 cut(s) | 2057, 4932, 4979, 5182 |
| BbsI | GAAGAC | 2 cut(s) | 2930, 4112 |
| Bbv12I | GWGCWC | 2 cut(s) | 2017, 5201 |
| BbvI | GCAGC | 8 cut(s) | 2258, 2287, 3078, 3184, 3619, 3681, 4383, 4568 |
| BceAI | ACGGC | 1 cut(s) | 3682 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3672, 3706 |
| BciT130I | CCWGG | 5 cut(s) | 258, 2489, 4652, 4968, 5117 |
| BclI | TGATCA | 4 cut(s) | 304, 501, 4006, 4876 |
| BcnI | CCSGG | 5 cut(s) | 5061, 5062, 5078, 5079, 5084 |
| BcoDI | GTCTC | 3 cut(s) | 556, 2075, 3548 |
| BfmI | CTRYAG | 3 cut(s) | 1656, 1684, 3294 |
| BfoI | RGCGCY | 2 cut(s) | 1382, 1456 |
| BfuAI | ACCTGC | 1 cut(s) | 962 |
| BglII | AGATCT | 1 cut(s) | 3259 |
| BisI | GCNGC | 8 cut(s) | 2247, 2276, 3067, 3173, 3608, 3695, 4397, 4557 |
| BlnI | CCTAGG | 2 cut(s) | 20, 4333 |
| BlsI | GCNGC | 8 cut(s) | 2248, 2277, 3068, 3174, 3609, 3696, 4398, 4558 |
| Bme18I | GGWCC | 2 cut(s) | 733, 5070 |
| BmeT110I | CYCGRG | 3 cut(s) | 4091, 5060, 5077 |
| BmgT120I | GGNCC | 8 cut(s) | 710, 733, 784, 4790, 5057, 5058, 5070, 5080 |
| BmiI | GGNNCC | 9 cut(s) | 734, 1380, 1454, 3591, 3903, 4965, 5059, 5072, 5215 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2171 |
| BpiI | GAAGAC | 2 cut(s) | 2930, 4112 |
| Bpu10I | CCTNAGC | 2 cut(s) | 4511, 4728 |
| Bpu14I | TTCGAA | 3 cut(s) | 979, 1171, 1797 |
| BpuEI | CTTGAG | 3 cut(s) | 165, 3879, 4280 |
| BpuMI | CCSGG | 5 cut(s) | 5061, 5062, 5078, 5079, 5084 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2402 |
| BsaHI | GRCGYC | 4 cut(s) | 1379, 1453, 3352, 5141 |
| BsaI | GGTCTC | 1 cut(s) | 2075 |
| BsaWI | WCCGGW | 1 cut(s) | 993 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 1462, 2105, 2656, 4566, 5067, 5082, 5083, 5116 |
| Bse118I | RCCGGY | 2 cut(s) | 712, 993 |
| Bse1I | ACTGG | 4 cut(s) | 2734, 4082, 4958, 5208 |
| Bse21I | CCTNAGG | 2 cut(s) | 2502, 3243 |
| Bse3DI | GCAATG | 1 cut(s) | 3992 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2402 |
| BseBI | CCWGG | 5 cut(s) | 258, 2489, 4652, 4968, 5117 |
| BseJI | GATNNNNATC | 1 cut(s) | 2402 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 1462, 2105, 2656, 4566, 5067, 5082, 5083, 5116 |
| BseMI | GCAATG | 1 cut(s) | 3992 |
| BseMII | CTCAG | 1 cut(s) | 255 |
| BseNI | ACTGG | 4 cut(s) | 2734, 4082, 4958, 5208 |
| BseRI | GAGGAG | 1 cut(s) | 374 |
| BseSI | GKGCMC | 2 cut(s) | 4442, 5061 |
| BseXI | GCAGC | 8 cut(s) | 2258, 2287, 3078, 3184, 3619, 3681, 4383, 4568 |
| BseYI | CCCAGC | 1 cut(s) | 3848 |
| BsgI | GTGCAG | 3 cut(s) | 770, 1584, 1693 |
| Bsh1236I | CGCG | 1 cut(s) | 5123 |
| BshNI | GGYRCC | 2 cut(s) | 1378, 1452 |
| BshTI | ACCGGT | 1 cut(s) | 993 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2017, 5201 |
| BsiHKCI | CYCGRG | 3 cut(s) | 4091, 5060, 5077 |
| BsiSI | CCGG | 5 cut(s) | 713, 994, 5061, 5078, 5083 |
| BslFI | GGGAC | 3 cut(s) | 332, 1689, 5056 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 1462, 2105, 2656, 4566, 5067, 5082, 5083, 5116 |
| BsmAI | GTCTC | 3 cut(s) | 556, 2075, 3548 |
| BsmFI | GGGAC | 3 cut(s) | 332, 1689, 5056 |
| BsmI | GAATGC | 1 cut(s) | 628 |
| Bso31I | GGTCTC | 1 cut(s) | 2075 |
| BsoBI | CYCGRG | 3 cut(s) | 4091, 5060, 5077 |
| Bsp119I | TTCGAA | 3 cut(s) | 979, 1171, 1797 |
| Bsp120I | GGGCCC | 1 cut(s) | 5057 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2017, 4442, 5061, 5201 |
| BspACI | CCGC | 4 cut(s) | 2389, 2419, 3069, 5026 |
| BspCNI | CTCAG | 1 cut(s) | 254 |
| BspFNI | CGCG | 1 cut(s) | 5123 |
| BspHI | TCATGA | 1 cut(s) | 3360 |
| BspLI | GGNNCC | 9 cut(s) | 734, 1380, 1454, 3591, 3903, 4965, 5059, 5072, 5215 |
| BspMAI | CTGCAG | 3 cut(s) | 1660, 1688, 3298 |
| BspMI | ACCTGC | 1 cut(s) | 962 |
| BspPI | GGATC | 5 cut(s) | 137, 1712, 2200, 4104, 5143 |
| BspT104I | TTCGAA | 3 cut(s) | 979, 1171, 1797 |
| BspT107I | GGYRCC | 2 cut(s) | 1378, 1452 |
| BspTNI | GGTCTC | 1 cut(s) | 2075 |
| BsrDI | GCAATG | 1 cut(s) | 3992 |
| BsrFI | RCCGGY | 2 cut(s) | 712, 993 |
| BsrI | ACTGG | 4 cut(s) | 2734, 4082, 4958, 5208 |
| BssAI | RCCGGY | 2 cut(s) | 712, 993 |
| BssNAI | GTATAC | 1 cut(s) | 38 |
| BssNI | GRCGYC | 4 cut(s) | 1379, 1453, 3352, 5141 |
| BssSI | CACGAG | 4 cut(s) | 2057, 4932, 4979, 5182 |
| BssT1I | CCWWGG | 4 cut(s) | 20, 350, 640, 4333 |
| Bst1107I | GTATAC | 1 cut(s) | 38 |
| Bst2BI | CACGAG | 4 cut(s) | 2057, 4932, 4979, 5182 |
| Bst2UI | CCWGG | 5 cut(s) | 258, 2489, 4652, 4968, 5117 |
| BstACI | GRCGYC | 4 cut(s) | 1379, 1453, 3352, 5141 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1547, 2804, 2837 |
| BstBI | TTCGAA | 3 cut(s) | 979, 1171, 1797 |
| BstC8I | GCNNGC | 9 cut(s) | 969, 2370, 2389, 2592, 2742, 2829, 3782, 4442, 4647 |
| BstFNI | CGCG | 1 cut(s) | 5123 |
| BstH2I | RGCGCY | 2 cut(s) | 1382, 1456 |
| BstHHI | GCGC | 4 cut(s) | 1381, 1423, 1455, 4396 |
| BstMAI | GTCTC | 3 cut(s) | 556, 2075, 3548 |
| BstNI | CCWGG | 5 cut(s) | 258, 2489, 4652, 4968, 5117 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2171 |
| BstSFI | CTRYAG | 3 cut(s) | 1656, 1684, 3294 |
| BstSLI | GKGCMC | 2 cut(s) | 4442, 5061 |
| BstUI | CGCG | 1 cut(s) | 5123 |
| BstV1I | GCAGC | 8 cut(s) | 2258, 2287, 3078, 3184, 3619, 3681, 4383, 4568 |
| BstV2I | GAAGAC | 2 cut(s) | 2930, 4112 |
| BstX2I | RGATCY | 3 cut(s) | 1704, 2192, 3259 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 647 |
| BstYI | RGATCY | 3 cut(s) | 1704, 2192, 3259 |
| BstZ17I | GTATAC | 1 cut(s) | 38 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2502, 3243 |
| BtsIMutI | CAGTG | 4 cut(s) | 1456, 2455, 4637, 5201 |
| BveI | ACCTGC | 1 cut(s) | 962 |
| Cac8I | GCNNGC | 9 cut(s) | 969, 2370, 2389, 2592, 2742, 2829, 3782, 4442, 4647 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2822 |
| CciI | TCATGA | 1 cut(s) | 3360 |
| CfoI | GCGC | 4 cut(s) | 1381, 1423, 1455, 4396 |
| Cfr10I | RCCGGY | 2 cut(s) | 712, 993 |
| Cfr13I | GGNCC | 8 cut(s) | 710, 733, 784, 4790, 5057, 5058, 5070, 5080 |
| Cfr9I | CCCGGG | 2 cut(s) | 5060, 5077 |
| CseI | GACGC | 1 cut(s) | 3341 |
| Csp6I | GTAC | 7 cut(s) | 261, 1189, 1558, 2118, 2544, 2727, 3620 |
| CspAI | ACCGGT | 1 cut(s) | 993 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3879, 3914 |
| CviQI | GTAC | 7 cut(s) | 261, 1189, 1558, 2118, 2544, 2727, 3620 |
| DinI | GGCGCC | 2 cut(s) | 1380, 1454 |
| DraI | TTTAAA | 4 cut(s) | 850, 1474, 1491, 2151 |
| DraIII | CACNNNGTG | 1 cut(s) | 1388 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 5140 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 5140 |
| EaeI | YGGCCR | 1 cut(s) | 2931 |
| Ecl136II | GAGCTC | 2 cut(s) | 2015, 5199 |
| Eco130I | CCWWGG | 4 cut(s) | 20, 350, 640, 4333 |
| Eco147I | AGGCCT | 2 cut(s) | 4938, 5188 |
| Eco24I | GRGCYC | 3 cut(s) | 2017, 5061, 5201 |
| Eco31I | GGTCTC | 1 cut(s) | 2075 |
| Eco47I | GGWCC | 2 cut(s) | 733, 5070 |
| Eco53kI | GAGCTC | 2 cut(s) | 2015, 5199 |
| Eco81I | CCTNAGG | 2 cut(s) | 2502, 3243 |
| Eco88I | CYCGRG | 3 cut(s) | 4091, 5060, 5077 |
| EcoICRI | GAGCTC | 2 cut(s) | 2015, 5199 |
| EcoRI | GAATTC | 2 cut(s) | 355, 2340 |
| EcoRII | CCWGG | 5 cut(s) | 256, 2487, 4650, 4966, 5115 |
| EcoT14I | CCWWGG | 4 cut(s) | 20, 350, 640, 4333 |
| EcoT22I | ATGCAT | 9 cut(s) | 1118, 1182, 2133, 2403, 2592, 3673, 3970, 4271, 4600 |
| EcoT38I | GRGCYC | 3 cut(s) | 2017, 5061, 5201 |
| EgeI | GGCGCC | 2 cut(s) | 1380, 1454 |
| EheI | GGCGCC | 2 cut(s) | 1380, 1454 |
| ErhI | CCWWGG | 4 cut(s) | 20, 350, 640, 4333 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 4097, 4129, 4629, 4661 |
| FaqI | GGGAC | 3 cut(s) | 332, 1689, 5056 |
| FauI | CCCGC | 1 cut(s) | 2396 |
| FbaI | TGATCA | 4 cut(s) | 304, 501, 4006, 4876 |
| FblI | GTMKAC | 3 cut(s) | 37, 478, 1237 |
| Fnu4HI | GCNGC | 8 cut(s) | 2247, 2276, 3067, 3173, 3608, 3695, 4397, 4557 |
| FriOI | GRGCYC | 3 cut(s) | 2017, 5061, 5201 |
| Fsp4HI | GCNGC | 8 cut(s) | 2247, 2276, 3067, 3173, 3608, 3695, 4397, 4557 |
| FspI | TGCGCA | 1 cut(s) | 1422 |
| GlaI | GCGC | 4 cut(s) | 1380, 1422, 1454, 4395 |
| GluI | GCNGC | 8 cut(s) | 2247, 2276, 3067, 3173, 3608, 3695, 4397, 4557 |
| GsaI | CCCAGC | 1 cut(s) | 3852 |
| HaeII | RGCGCY | 2 cut(s) | 1382, 1456 |
| HapII | CCGG | 5 cut(s) | 713, 994, 5061, 5078, 5083 |
| HgaI | GACGC | 1 cut(s) | 3341 |
| HhaI | GCGC | 4 cut(s) | 1381, 1423, 1455, 4396 |
| Hin1I | GRCGYC | 4 cut(s) | 1379, 1453, 3352, 5141 |
| Hin6I | GCGC | 4 cut(s) | 1379, 1421, 1453, 4394 |
| HinP1I | GCGC | 4 cut(s) | 1379, 1421, 1453, 4394 |
| HincII | GTYRAC | 1 cut(s) | 479 |
| HindII | GTYRAC | 1 cut(s) | 479 |
| HindIII | AAGCTT | 4 cut(s) | 229, 688, 2297, 2885 |
| HpaII | CCGG | 5 cut(s) | 713, 994, 5061, 5078, 5083 |
| HphI | GGTGA | 7 cut(s) | 656, 983, 1918, 2490, 4535, 4744, 5158 |
| Hpy166II | GTNNAC | 9 cut(s) | 38, 479, 1001, 1189, 1238, 2414, 2941, 3238, 4574 |
| Hpy188I | TCNGA | 5 cut(s) | 678, 2651, 3871, 5106, 5229 |
| Hpy8I | GTNNAC | 9 cut(s) | 38, 479, 1001, 1189, 1238, 2414, 2941, 3238, 4574 |
| Hpy99I | CGWCG | 2 cut(s) | 5137, 5146 |
| HpyAV | CCTTC | 6 cut(s) | 670, 1778, 2646, 2650, 2995, 4123 |
| Hsp92I | GRCGYC | 4 cut(s) | 1379, 1453, 3352, 5141 |
| HspAI | GCGC | 4 cut(s) | 1379, 1421, 1453, 4394 |
| KasI | GGCGCC | 2 cut(s) | 1378, 1452 |
| Ksp22I | TGATCA | 4 cut(s) | 304, 501, 4006, 4876 |
| LmnI | GCTCC | 3 cut(s) | 721, 4946, 5196 |
| Lsp1109I | GCAGC | 8 cut(s) | 2258, 2287, 3078, 3184, 3619, 3681, 4383, 4568 |
| MaeIII | GTNAC | 7 cut(s) | 90, 115, 206, 1870, 2634, 4067, 5089 |
| MfeI | CAATTG | 5 cut(s) | 300, 2268, 2523, 3092, 3732 |
| MflI | RGATCY | 3 cut(s) | 1704, 2192, 3259 |
| MhlI | GDGCHC | 4 cut(s) | 2017, 4442, 5061, 5201 |
| MlsI | TGGCCA | 1 cut(s) | 2933 |
| MluNI | TGGCCA | 1 cut(s) | 2933 |
| Mly113I | GGCGCC | 2 cut(s) | 1379, 1453 |
| MlyI | GAGTC | 3 cut(s) | 1993, 2161, 5061 |
| MmeI | TCCRAC | 5 cut(s) | 2012, 2214, 3719, 3914, 3996 |
| Mox20I | TGGCCA | 1 cut(s) | 2933 |
| Mph1103I | ATGCAT | 9 cut(s) | 1118, 1182, 2133, 2403, 2592, 3673, 3970, 4271, 4600 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2052 |
| MscI | TGGCCA | 1 cut(s) | 2933 |
| MslI | CAYNNNNRTG | 3 cut(s) | 80, 2260, 2396 |
| Msp20I | TGGCCA | 1 cut(s) | 2933 |
| MspA1I | CMGCKG | 5 cut(s) | 2419, 3069, 3233, 3467, 3497 |
| MspI | CCGG | 5 cut(s) | 713, 994, 5061, 5078, 5083 |
| MunI | CAATTG | 5 cut(s) | 300, 2268, 2523, 3092, 3732 |
| Mva1269I | GAATGC | 1 cut(s) | 628 |
| MvaI | CCWGG | 5 cut(s) | 258, 2489, 4652, 4968, 5117 |
| MvnI | CGCG | 1 cut(s) | 5123 |
| NarI | GGCGCC | 2 cut(s) | 1379, 1453 |
| NciI | CCSGG | 5 cut(s) | 5061, 5062, 5078, 5079, 5084 |
| NlaIV | GGNNCC | 9 cut(s) | 734, 1380, 1454, 3591, 3903, 4965, 5059, 5072, 5215 |
| NmuCI | GTSAC | 2 cut(s) | 206, 5089 |
| NsbI | TGCGCA | 1 cut(s) | 1422 |
| NsiI | ATGCAT | 9 cut(s) | 1118, 1182, 2133, 2403, 2592, 3673, 3970, 4271, 4600 |
| NspV | TTCGAA | 3 cut(s) | 979, 1171, 1797 |
| PaeI | GCATGC | 4 cut(s) | 971, 2594, 2831, 3784 |
| PagI | TCATGA | 1 cut(s) | 3360 |
| PceI | AGGCCT | 2 cut(s) | 4938, 5188 |
| PciI | ACATGT | 2 cut(s) | 1812, 4118 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1059, 4801 |
| PctI | GAATGC | 1 cut(s) | 628 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2052 |
| PinAI | ACCGGT | 1 cut(s) | 993 |
| PkrI | GCNGC | 8 cut(s) | 2248, 2277, 3068, 3174, 3609, 3696, 4398, 4558 |
| PleI | GAGTC | 3 cut(s) | 1993, 2161, 5060 |
| PluTI | GGCGCC | 2 cut(s) | 1382, 1456 |
| PpsI | GAGTC | 3 cut(s) | 1993, 2161, 5060 |
| PscI | ACATGT | 2 cut(s) | 1812, 4118 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2171 |
| PshBI | ATTAAT | 4 cut(s) | 2946, 2957, 3144, 4586 |
| Psp124BI | GAGCTC | 2 cut(s) | 2017, 5201 |
| Psp1406I | AACGTT | 1 cut(s) | 3513 |
| Psp6I | CCWGG | 5 cut(s) | 256, 2487, 4650, 4966, 5115 |
| PspFI | CCCAGC | 1 cut(s) | 3848 |
| PspGI | CCWGG | 5 cut(s) | 256, 2487, 4650, 4966, 5115 |
| PspN4I | GGNNCC | 9 cut(s) | 734, 1380, 1454, 3591, 3903, 4965, 5059, 5072, 5215 |
| PspOMI | GGGCCC | 1 cut(s) | 5057 |
| PspPI | GGNCC | 8 cut(s) | 710, 733, 784, 4790, 5057, 5058, 5070, 5080 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1321, 1353 |
| PstI | CTGCAG | 3 cut(s) | 1660, 1688, 3298 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2822 |
| PsuI | RGATCY | 3 cut(s) | 1704, 2192, 3259 |
| PvuII | CAGCTG | 3 cut(s) | 3233, 3467, 3497 |
| RsaI | GTAC | 7 cut(s) | 262, 1190, 1559, 2119, 2545, 2728, 3621 |
| RsaNI | GTAC | 7 cut(s) | 261, 1189, 1558, 2118, 2544, 2727, 3620 |
| RseI | CAYNNNNRTG | 3 cut(s) | 80, 2260, 2396 |
| SacI | GAGCTC | 2 cut(s) | 2017, 5201 |
| SalI | GTCGAC | 1 cut(s) | 477 |
| SatI | GCNGC | 8 cut(s) | 2247, 2276, 3067, 3173, 3608, 3695, 4397, 4557 |
| Sau96I | GGNCC | 8 cut(s) | 710, 733, 784, 4790, 5057, 5058, 5070, 5080 |
| SchI | GAGTC | 3 cut(s) | 1993, 2161, 5061 |
| SduI | GDGCHC | 4 cut(s) | 2017, 4442, 5061, 5201 |
| SfcI | CTRYAG | 3 cut(s) | 1656, 1684, 3294 |
| SfoI | GGCGCC | 2 cut(s) | 1380, 1454 |
| SfuI | TTCGAA | 3 cut(s) | 979, 1171, 1797 |
| SgrAI | CRCCGGYG | 1 cut(s) | 993 |
| SinI | GGWCC | 2 cut(s) | 733, 5070 |
| SmaI | CCCGGG | 2 cut(s) | 5062, 5079 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 80, 2260, 2396 |
| SmlI | CTYRAG | 3 cut(s) | 180, 3894, 4259 |
| SmoI | CTYRAG | 3 cut(s) | 180, 3894, 4259 |
| SphI | GCATGC | 4 cut(s) | 971, 2594, 2831, 3784 |
| SseBI | AGGCCT | 2 cut(s) | 4938, 5188 |
| SsiI | CCGC | 4 cut(s) | 2389, 2419, 3069, 5026 |
| SspDI | GGCGCC | 2 cut(s) | 1378, 1452 |
| SspI | AATATT | 9 cut(s) | 417, 682, 950, 1224, 1298, 1822, 1900, 2791, 2977 |
| SstI | GAGCTC | 2 cut(s) | 2017, 5201 |
| StuI | AGGCCT | 2 cut(s) | 4938, 5188 |
| StyI | CCWWGG | 4 cut(s) | 20, 350, 640, 4333 |
| TaqI | TCGA | 8 cut(s) | 132, 478, 874, 979, 1171, 1797, 3373, 4425 |
| TatI | WGTACW | 3 cut(s) | 1188, 2543, 3619 |
| TscAI | CASTG | 4 cut(s) | 1463, 2455, 4637, 5208 |
| TseFI | GTSAC | 2 cut(s) | 206, 5089 |
| TseI | GCWGC | 8 cut(s) | 2246, 2275, 3066, 3172, 3607, 3694, 4396, 4556 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 5089 |
| TspGWI | ACGGA | 5 cut(s) | 55, 523, 1161, 1352, 5206 |
| TspMI | CCCGGG | 2 cut(s) | 5060, 5077 |
| TspRI | CASTG | 4 cut(s) | 1463, 2455, 4637, 5208 |
| VpaK11BI | GGWCC | 2 cut(s) | 733, 5070 |
| VspI | ATTAAT | 4 cut(s) | 2946, 2957, 3144, 4586 |
| XbaI | TCTAGA | 2 cut(s) | 487, 698 |
| XmaI | CCCGGG | 2 cut(s) | 5060, 5077 |
| XmaJI | CCTAGG | 2 cut(s) | 20, 4333 |
| XmiI | GTMKAC | 3 cut(s) | 37, 478, 1237 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2052 |
| ZraI | GACGTC | 1 cut(s) | 5142 |
| Zsp2I | ATGCAT | 9 cut(s) | 1118, 1182, 2133, 2403, 2592, 3673, 3970, 4271, 4600 |