Retrotransposon gag protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 82 - 173 | 1.1e-17 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 135 |
| Acc36I | ACCTGC | 2 cut(s) | 135, 304 |
| AccII | CGCG | 1 cut(s) | 11 |
| AciI | CCGC | 4 cut(s) | 47, 549, 756, 836 |
| AclWI | GGATC | 8 cut(s) | 152, 165, 234, 310, 327, 816, 869, 918 |
| AfaI | GTAC | 2 cut(s) | 51, 431 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 986, 1223, 1224 |
| AgsI | TTSAA | 9 cut(s) | 25, 139, 329, 396, 445, 973, 995, 1103, 1127 |
| AjnI | CCWGG | 3 cut(s) | 79, 958, 985 |
| Alw21I | GWGCWC | 1 cut(s) | 105 |
| Alw26I | GTCTC | 1 cut(s) | 1059 |
| AlwI | GGATC | 8 cut(s) | 152, 165, 234, 310, 327, 816, 869, 918 |
| ApeKI | GCWGC | 2 cut(s) | 368, 614 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 968 |
| AsuC2I | CCSGG | 1 cut(s) | 1185 |
| AsuHPI | GGTGA | 4 cut(s) | 64, 95, 116, 1298 |
| BamHI | GGATCC | 1 cut(s) | 157 |
| BanII | GRGCYC | 1 cut(s) | 105 |
| BbsI | GAAGAC | 1 cut(s) | 482 |
| Bbv12I | GWGCWC | 1 cut(s) | 105 |
| BbvI | GCAGC | 2 cut(s) | 380, 601 |
| BccI | CCATC | 5 cut(s) | 799, 805, 897, 921, 1214 |
| BciT130I | CCWGG | 3 cut(s) | 81, 960, 987 |
| BclI | TGATCA | 2 cut(s) | 189, 787 |
| BcnI | CCSGG | 1 cut(s) | 1185 |
| BcoDI | GTCTC | 1 cut(s) | 1059 |
| BfaI | CTAG | 2 cut(s) | 356, 1300 |
| BfmI | CTRYAG | 1 cut(s) | 297 |
| BfuAI | ACCTGC | 2 cut(s) | 135, 304 |
| BisI | GCNGC | 2 cut(s) | 369, 615 |
| BlsI | GCNGC | 2 cut(s) | 370, 616 |
| BmcAI | AGTACT | 1 cut(s) | 431 |
| Bme1390I | CCNGG | 4 cut(s) | 81, 960, 987, 1185 |
| BmiI | GGNNCC | 2 cut(s) | 159, 1272 |
| BmrFI | CCNGG | 4 cut(s) | 81, 960, 987, 1185 |
| BmsI | GCATC | 3 cut(s) | 78, 123, 396 |
| BpiI | GAAGAC | 1 cut(s) | 482 |
| BpuEI | CTTGAG | 4 cut(s) | 89, 1079, 1154, 1273 |
| BpuMI | CCSGG | 1 cut(s) | 1185 |
| BsaBI | GATNNNNATC | 1 cut(s) | 162 |
| BsaJI | CCNNGG | 5 cut(s) | 850, 958, 959, 986, 1281 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 552, 582 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 986, 1223, 1224 |
| Bse1I | ACTGG | 2 cut(s) | 1264, 1274 |
| Bse8I | GATNNNNATC | 1 cut(s) | 162 |
| BseBI | CCWGG | 3 cut(s) | 81, 960, 987 |
| BseDI | CCNNGG | 5 cut(s) | 850, 958, 959, 986, 1281 |
| BseGI | GGATG | 4 cut(s) | 114, 207, 908, 913 |
| BseJI | GATNNNNATC | 1 cut(s) | 162 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 986, 1223, 1224 |
| BseMII | CTCAG | 1 cut(s) | 713 |
| BseNI | ACTGG | 2 cut(s) | 1264, 1274 |
| BseRI | GAGGAG | 3 cut(s) | 359, 573, 1017 |
| BseXI | GCAGC | 2 cut(s) | 380, 601 |
| Bsh1236I | CGCG | 1 cut(s) | 11 |
| BsiHKAI | GWGCWC | 1 cut(s) | 105 |
| BsiSI | CCGG | 1 cut(s) | 1185 |
| BslFI | GGGAC | 2 cut(s) | 450, 789 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 986, 1223, 1224 |
| BsmAI | GTCTC | 1 cut(s) | 1059 |
| BsmFI | GGGAC | 2 cut(s) | 450, 789 |
| BsmI | GAATGC | 1 cut(s) | 1240 |
| Bsp1286I | GDGCHC | 1 cut(s) | 105 |
| BspACI | CCGC | 4 cut(s) | 47, 549, 756, 836 |
| BspCNI | CTCAG | 1 cut(s) | 712 |
| BspFNI | CGCG | 1 cut(s) | 11 |
| BspHI | TCATGA | 1 cut(s) | 592 |
| BspLI | GGNNCC | 2 cut(s) | 159, 1272 |
| BspMAI | CTGCAG | 1 cut(s) | 301 |
| BspMI | ACCTGC | 2 cut(s) | 135, 304 |
| BspPI | GGATC | 8 cut(s) | 152, 165, 234, 310, 327, 816, 869, 918 |
| BsrI | ACTGG | 2 cut(s) | 1264, 1274 |
| BssECI | CCNNGG | 5 cut(s) | 850, 958, 959, 986, 1281 |
| BssT1I | CCWWGG | 1 cut(s) | 850 |
| Bst2UI | CCWGG | 3 cut(s) | 81, 960, 987 |
| Bst4CI | ACNGT | 2 cut(s) | 488, 977 |
| Bst6I | CTCTTC | 1 cut(s) | 376 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 44, 1012 |
| BstC8I | GCNNGC | 3 cut(s) | 243, 373, 828 |
| BstDEI | CTNAG | 4 cut(s) | 132, 363, 624, 699 |
| BstF5I | GGATG | 4 cut(s) | 114, 207, 908, 913 |
| BstFNI | CGCG | 1 cut(s) | 11 |
| BstMAI | GTCTC | 1 cut(s) | 1059 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 44, 365, 862, 1012, 1079 |
| BstNI | CCWGG | 3 cut(s) | 81, 960, 987 |
| BstNSI | RCATGY | 1 cut(s) | 830 |
| BstSCI | CCNGG | 4 cut(s) | 79, 958, 985, 1183 |
| BstSFI | CTRYAG | 1 cut(s) | 297 |
| BstUI | CGCG | 1 cut(s) | 11 |
| BstV1I | GCAGC | 2 cut(s) | 380, 601 |
| BstV2I | GAAGAC | 1 cut(s) | 482 |
| BstX2I | RGATCY | 2 cut(s) | 157, 302 |
| BstYI | RGATCY | 2 cut(s) | 157, 302 |
| BtsCI | GGATG | 4 cut(s) | 114, 207, 908, 913 |
| BtsIMutI | CAGTG | 1 cut(s) | 1281 |
| BveI | ACCTGC | 2 cut(s) | 135, 304 |
| Cac8I | GCNNGC | 3 cut(s) | 243, 373, 828 |
| CciI | TCATGA | 1 cut(s) | 592 |
| CseI | GACGC | 1 cut(s) | 1127 |
| Csp6I | GTAC | 2 cut(s) | 50, 430 |
| CviAII | CATG | 8 cut(s) | 176, 187, 230, 315, 462, 593, 827, 1162 |
| CviQI | GTAC | 2 cut(s) | 50, 430 |
| DdeI | CTNAG | 4 cut(s) | 132, 363, 624, 699 |
| Eam1104I | CTCTTC | 1 cut(s) | 376 |
| EarI | CTCTTC | 1 cut(s) | 376 |
| Ecl136II | GAGCTC | 1 cut(s) | 103 |
| Eco130I | CCWWGG | 1 cut(s) | 850 |
| Eco24I | GRGCYC | 1 cut(s) | 105 |
| Eco53kI | GAGCTC | 1 cut(s) | 103 |
| EcoICRI | GAGCTC | 1 cut(s) | 103 |
| EcoRII | CCWGG | 3 cut(s) | 79, 958, 985 |
| EcoT14I | CCWWGG | 1 cut(s) | 850 |
| EcoT38I | GRGCYC | 1 cut(s) | 105 |
| ErhI | CCWWGG | 1 cut(s) | 850 |
| FaeI | CATG | 8 cut(s) | 179, 190, 233, 318, 465, 596, 830, 1165 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 667, 699 |
| FaqI | GGGAC | 2 cut(s) | 450, 789 |
| FatI | CATG | 8 cut(s) | 175, 186, 229, 314, 461, 592, 826, 1161 |
| FbaI | TGATCA | 2 cut(s) | 189, 787 |
| Fnu4HI | GCNGC | 2 cut(s) | 369, 615 |
| FokI | GGATG | 4 cut(s) | 101, 214, 900, 915 |
| FriOI | GRGCYC | 1 cut(s) | 105 |
| Fsp4HI | GCNGC | 2 cut(s) | 369, 615 |
| FspBI | CTAG | 2 cut(s) | 356, 1300 |
| GluI | GCNGC | 2 cut(s) | 369, 615 |
| HapII | CCGG | 1 cut(s) | 1185 |
| HgaI | GACGC | 1 cut(s) | 1127 |
| Hin1II | CATG | 8 cut(s) | 179, 190, 233, 318, 465, 596, 830, 1165 |
| HincII | GTYRAC | 2 cut(s) | 33, 1151 |
| HindII | GTYRAC | 2 cut(s) | 33, 1151 |
| HindIII | AAGCTT | 2 cut(s) | 94, 333 |
| HinfI | GANTC | 5 cut(s) | 13, 416, 441, 846, 1147 |
| HpaII | CCGG | 1 cut(s) | 1185 |
| HphI | GGTGA | 4 cut(s) | 64, 95, 116, 1298 |
| Hpy166II | GTNNAC | 3 cut(s) | 33, 571, 1151 |
| Hpy188I | TCNGA | 4 cut(s) | 529, 702, 787, 1282 |
| Hpy188III | TCNNGA | 3 cut(s) | 593, 1058, 1133 |
| Hpy8I | GTNNAC | 3 cut(s) | 33, 571, 1151 |
| HpyAV | CCTTC | 5 cut(s) | 19, 128, 257, 261, 506 |
| HpyCH4III | ACNGT | 2 cut(s) | 488, 977 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 44, 365, 862, 1012, 1079 |
| HpyF3I | CTNAG | 4 cut(s) | 132, 363, 624, 699 |
| Hsp92II | CATG | 8 cut(s) | 179, 190, 233, 318, 465, 596, 830, 1165 |
| Ksp22I | TGATCA | 2 cut(s) | 189, 787 |
| LmnI | GCTCC | 3 cut(s) | 560, 823, 930 |
| Lsp1109I | GCAGC | 2 cut(s) | 380, 601 |
| LweI | GCATC | 3 cut(s) | 78, 123, 396 |
| MaeI | CTAG | 2 cut(s) | 356, 1300 |
| MboII | GAAGA | 3 cut(s) | 158, 393, 482 |
| MflI | RGATCY | 2 cut(s) | 157, 302 |
| MhlI | GDGCHC | 1 cut(s) | 105 |
| MluCI | AATT | 5 cut(s) | 150, 596, 628, 688, 1068 |
| MlyI | GAGTC | 1 cut(s) | 1156 |
| MmeI | TCCRAC | 2 cut(s) | 820, 909 |
| MroXI | GAANNNNTTC | 1 cut(s) | 968 |
| MseI | TTAA | 2 cut(s) | 1067, 1248 |
| MslI | CAYNNNNRTG | 2 cut(s) | 174, 831 |
| MspI | CCGG | 1 cut(s) | 1185 |
| MspR9I | CCNGG | 4 cut(s) | 81, 960, 987, 1185 |
| Mva1269I | GAATGC | 1 cut(s) | 1240 |
| MvaI | CCWGG | 3 cut(s) | 81, 960, 987 |
| MvnI | CGCG | 1 cut(s) | 11 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 44, 365, 862, 1012, 1079 |
| NciI | CCSGG | 1 cut(s) | 1185 |
| NlaIII | CATG | 8 cut(s) | 179, 190, 233, 318, 465, 596, 830, 1165 |
| NlaIV | GGNNCC | 2 cut(s) | 159, 1272 |
| NspI | RCATGY | 1 cut(s) | 830 |
| PaeI | GCATGC | 1 cut(s) | 830 |
| PagI | TCATGA | 1 cut(s) | 592 |
| PaqCI | CACCTGC | 1 cut(s) | 135 |
| PasI | CCCWGGG | 1 cut(s) | 959 |
| PctI | GAATGC | 1 cut(s) | 1240 |
| PdmI | GAANNNNTTC | 1 cut(s) | 968 |
| PfeI | GAWTC | 4 cut(s) | 13, 416, 441, 846 |
| PkrI | GCNGC | 2 cut(s) | 370, 616 |
| PleI | GAGTC | 1 cut(s) | 1155 |
| PpsI | GAGTC | 1 cut(s) | 1155 |
| Psp124BI | GAGCTC | 1 cut(s) | 105 |
| Psp6I | CCWGG | 3 cut(s) | 79, 958, 985 |
| PspGI | CCWGG | 3 cut(s) | 79, 958, 985 |
| PspN4I | GGNNCC | 2 cut(s) | 159, 1272 |
| PstI | CTGCAG | 1 cut(s) | 301 |
| PsuI | RGATCY | 2 cut(s) | 157, 302 |
| RsaI | GTAC | 2 cut(s) | 51, 431 |
| RsaNI | GTAC | 2 cut(s) | 50, 430 |
| RseI | CAYNNNNRTG | 2 cut(s) | 174, 831 |
| SacI | GAGCTC | 1 cut(s) | 105 |
| SaqAI | TTAA | 2 cut(s) | 1067, 1248 |
| SatI | GCNGC | 2 cut(s) | 369, 615 |
| SbfI | CCTGCAGG | 1 cut(s) | 301 |
| ScaI | AGTACT | 1 cut(s) | 431 |
| SchI | GAGTC | 1 cut(s) | 1156 |
| ScrFI | CCNGG | 4 cut(s) | 81, 960, 987, 1185 |
| SdaI | CCTGCAGG | 1 cut(s) | 301 |
| SduI | GDGCHC | 1 cut(s) | 105 |
| SfaNI | GCATC | 3 cut(s) | 78, 123, 396 |
| SfcI | CTRYAG | 1 cut(s) | 297 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 174, 831 |
| SmlI | CTYRAG | 4 cut(s) | 104, 1058, 1133, 1252 |
| SmoI | CTYRAG | 4 cut(s) | 104, 1058, 1133, 1252 |
| SphI | GCATGC | 1 cut(s) | 830 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 301 |
| Sse9I | AATT | 5 cut(s) | 150, 596, 628, 688, 1068 |
| SsiI | CCGC | 4 cut(s) | 47, 549, 756, 836 |
| SspMI | CTAG | 2 cut(s) | 356, 1300 |
| SstI | GAGCTC | 1 cut(s) | 105 |
| StyD4I | CCNGG | 4 cut(s) | 79, 958, 985, 1183 |
| StyI | CCWWGG | 1 cut(s) | 850 |
| TaaI | ACNGT | 2 cut(s) | 488, 977 |
| TaqI | TCGA | 1 cut(s) | 925 |
| TasI | AATT | 5 cut(s) | 150, 596, 628, 688, 1068 |
| TatI | WGTACW | 1 cut(s) | 429 |
| TfiI | GAWTC | 4 cut(s) | 13, 416, 441, 846 |
| Tru1I | TTAA | 2 cut(s) | 1067, 1248 |
| Tru9I | TTAA | 2 cut(s) | 1067, 1248 |
| TscAI | CASTG | 1 cut(s) | 1281 |
| TseI | GCWGC | 2 cut(s) | 368, 614 |
| TspDTI | ATGAA | 6 cut(s) | 110, 158, 218, 450, 525, 609 |
| TspRI | CASTG | 1 cut(s) | 1281 |
| XceI | RCATGY | 1 cut(s) | 830 |
| XmnI | GAANNNNTTC | 1 cut(s) | 968 |
| XspI | CTAG | 2 cut(s) | 356, 1300 |
| ZrmI | AGTACT | 1 cut(s) | 431 |