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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 721 |
| Acc65I | GGTACC | 1 cut(s) | 244 |
| AccB1I | GGYRCC | 1 cut(s) | 244 |
| AclWI | GGATC | 3 cut(s) | 54, 307, 714 |
| AcsI | RAATTY | 1 cut(s) | 419 |
| AcuI | CTGAAG | 1 cut(s) | 640 |
| AcvI | CACGTG | 1 cut(s) | 593 |
| AcyI | GRCGYC | 1 cut(s) | 718 |
| AfaI | GTAC | 3 cut(s) | 3, 144, 246 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 624, 663 |
| AflII | CTTAAG | 1 cut(s) | 99 |
| AjnI | CCWGG | 5 cut(s) | 239, 287, 371, 813, 855 |
| AleI | CACNNNNGTG | 1 cut(s) | 744 |
| AluBI | AGCT | 7 cut(s) | 47, 98, 112, 345, 584, 632, 1059 |
| AluI | AGCT | 7 cut(s) | 47, 98, 112, 345, 584, 632, 1059 |
| Alw21I | GWGCWC | 1 cut(s) | 751 |
| Alw44I | GTGCAC | 1 cut(s) | 747 |
| AlwI | GGATC | 3 cut(s) | 54, 307, 714 |
| AoxI | GGCC | 2 cut(s) | 614, 800 |
| ApaLI | GTGCAC | 1 cut(s) | 747 |
| ApeKI | GCWGC | 1 cut(s) | 632 |
| ApoI | RAATTY | 1 cut(s) | 419 |
| Asp718I | GGTACC | 1 cut(s) | 244 |
| AspS9I | GGNCC | 2 cut(s) | 615, 801 |
| AsuC2I | CCSGG | 1 cut(s) | 927 |
| AsuHPI | GGTGA | 3 cut(s) | 197, 294, 680 |
| AsuII | TTCGAA | 2 cut(s) | 417, 780 |
| BaeGI | GKGCMC | 1 cut(s) | 751 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 228, 236, 261, 269 |
| BanI | GGYRCC | 1 cut(s) | 244 |
| BbrPI | CACGTG | 1 cut(s) | 593 |
| BbsI | GAAGAC | 1 cut(s) | 109 |
| Bbv12I | GWGCWC | 1 cut(s) | 751 |
| BbvI | GCAGC | 1 cut(s) | 619 |
| BccI | CCATC | 3 cut(s) | 286, 557, 693 |
| BciT130I | CCWGG | 5 cut(s) | 241, 289, 373, 815, 857 |
| BciVI | GTATCC | 1 cut(s) | 1010 |
| BcnI | CCSGG | 1 cut(s) | 927 |
| BfaI | CTAG | 4 cut(s) | 409, 694, 840, 891 |
| BfrI | CTTAAG | 1 cut(s) | 99 |
| BfuI | GTATCC | 1 cut(s) | 1010 |
| BisI | GCNGC | 1 cut(s) | 633 |
| BlsI | GCNGC | 1 cut(s) | 634 |
| Bme1390I | CCNGG | 6 cut(s) | 241, 289, 373, 815, 857, 927 |
| BmgT120I | GGNCC | 2 cut(s) | 615, 801 |
| BmiI | GGNNCC | 2 cut(s) | 246, 397 |
| BmrFI | CCNGG | 6 cut(s) | 241, 289, 373, 815, 857, 927 |
| BmsI | GCATC | 1 cut(s) | 523 |
| BpiI | GAAGAC | 1 cut(s) | 109 |
| BpmI | CTGGAG | 1 cut(s) | 355 |
| Bpu14I | TTCGAA | 2 cut(s) | 417, 780 |
| BpuEI | CTTGAG | 1 cut(s) | 334 |
| BpuMI | CCSGG | 1 cut(s) | 927 |
| BsaAI | YACGTR | 1 cut(s) | 593 |
| BsaHI | GRCGYC | 1 cut(s) | 718 |
| BsaJI | CCNNGG | 4 cut(s) | 240, 255, 287, 724 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 624, 663 |
| Bse3DI | GCAATG | 2 cut(s) | 577, 870 |
| BseBI | CCWGG | 5 cut(s) | 241, 289, 373, 815, 857 |
| BseDI | CCNNGG | 4 cut(s) | 240, 255, 287, 724 |
| BseGI | GGATG | 2 cut(s) | 297, 568 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 624, 663 |
| BseMI | GCAATG | 2 cut(s) | 577, 870 |
| BseMII | CTCAG | 1 cut(s) | 495 |
| BseRI | GAGGAG | 1 cut(s) | 388 |
| BseSI | GKGCMC | 1 cut(s) | 751 |
| BseXI | GCAGC | 1 cut(s) | 619 |
| BseYI | CCCAGC | 1 cut(s) | 803 |
| BshFI | GGCC | 2 cut(s) | 616, 802 |
| BshNI | GGYRCC | 1 cut(s) | 244 |
| BsiHKAI | GWGCWC | 1 cut(s) | 751 |
| BsiSI | CCGG | 1 cut(s) | 927 |
| BslFI | GGGAC | 1 cut(s) | 705 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 624, 663 |
| BsmFI | GGGAC | 1 cut(s) | 705 |
| BsnI | GGCC | 2 cut(s) | 616, 802 |
| Bsp119I | TTCGAA | 2 cut(s) | 417, 780 |
| Bsp1286I | GDGCHC | 1 cut(s) | 751 |
| Bsp143I | GATC | 3 cut(s) | 59, 299, 706 |
| BspANI | GGCC | 2 cut(s) | 616, 802 |
| BspCNI | CTCAG | 1 cut(s) | 494 |
| BspLI | GGNNCC | 2 cut(s) | 246, 397 |
| BspPI | GGATC | 3 cut(s) | 54, 307, 714 |
| BspT104I | TTCGAA | 2 cut(s) | 417, 780 |
| BspT107I | GGYRCC | 1 cut(s) | 244 |
| BspTI | CTTAAG | 1 cut(s) | 99 |
| BsrDI | GCAATG | 2 cut(s) | 577, 870 |
| BssECI | CCNNGG | 4 cut(s) | 240, 255, 287, 724 |
| BssMI | GATC | 3 cut(s) | 59, 299, 706 |
| BssNI | GRCGYC | 1 cut(s) | 718 |
| BssT1I | CCWWGG | 2 cut(s) | 255, 724 |
| Bst2UI | CCWGG | 5 cut(s) | 241, 289, 373, 815, 857 |
| Bst4CI | ACNGT | 2 cut(s) | 473, 746 |
| Bst6I | CTCTTC | 2 cut(s) | 777, 923 |
| BstACI | GRCGYC | 1 cut(s) | 718 |
| BstAFI | CTTAAG | 1 cut(s) | 99 |
| BstBAI | YACGTR | 1 cut(s) | 593 |
| BstBI | TTCGAA | 2 cut(s) | 417, 780 |
| BstC8I | GCNNGC | 2 cut(s) | 45, 110 |
| BstDEI | CTNAG | 3 cut(s) | 481, 830, 979 |
| BstF5I | GGATG | 2 cut(s) | 297, 568 |
| BstKTI | GATC | 3 cut(s) | 62, 302, 709 |
| BstMBI | GATC | 3 cut(s) | 59, 299, 706 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 342, 351 |
| BstNI | CCWGG | 5 cut(s) | 241, 289, 373, 815, 857 |
| BstSCI | CCNGG | 6 cut(s) | 239, 287, 371, 813, 855, 925 |
| BstSLI | GKGCMC | 1 cut(s) | 751 |
| BstV1I | GCAGC | 1 cut(s) | 619 |
| BstV2I | GAAGAC | 1 cut(s) | 109 |
| BsuI | GTATCC | 1 cut(s) | 1010 |
| BsuRI | GGCC | 2 cut(s) | 616, 802 |
| BtsCI | GGATG | 2 cut(s) | 297, 568 |
| BtsIMutI | CAGTG | 1 cut(s) | 120 |
| Cac8I | GCNNGC | 2 cut(s) | 45, 110 |
| Cfr13I | GGNCC | 2 cut(s) | 615, 801 |
| CseI | GACGC | 1 cut(s) | 576 |
| Csp6I | GTAC | 3 cut(s) | 2, 143, 245 |
| CviAII | CATG | 2 cut(s) | 551, 1004 |
| CviQI | GTAC | 3 cut(s) | 2, 143, 245 |
| DdeI | CTNAG | 3 cut(s) | 481, 830, 979 |
| DpnI | GATC | 3 cut(s) | 61, 301, 708 |
| DpnII | GATC | 3 cut(s) | 59, 299, 706 |
| DraI | TTTAAA | 1 cut(s) | 1025 |
| Eam1104I | CTCTTC | 2 cut(s) | 777, 923 |
| EarI | CTCTTC | 2 cut(s) | 777, 923 |
| Eco130I | CCWWGG | 2 cut(s) | 255, 724 |
| Eco57I | CTGAAG | 1 cut(s) | 640 |
| Eco72I | CACGTG | 1 cut(s) | 593 |
| EcoO109I | RGGNCCY | 1 cut(s) | 615 |
| EcoRI | GAATTC | 1 cut(s) | 419 |
| EcoRII | CCWGG | 5 cut(s) | 239, 287, 371, 813, 855 |
| EcoT14I | CCWWGG | 2 cut(s) | 255, 724 |
| EcoT22I | ATGCAT | 1 cut(s) | 22 |
| ErhI | CCWWGG | 2 cut(s) | 255, 724 |
| FaeI | CATG | 2 cut(s) | 554, 1007 |
| FaiI | YATR | 9 cut(s) | 18, 22, 269, 448, 552, 606, 957, 1005, 1062 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 31, 63, 101, 133, 651, 683 |
| FaqI | GGGAC | 1 cut(s) | 705 |
| FatI | CATG | 2 cut(s) | 550, 1003 |
| Fnu4HI | GCNGC | 1 cut(s) | 633 |
| FokI | GGATG | 2 cut(s) | 304, 575 |
| Fsp4HI | GCNGC | 1 cut(s) | 633 |
| FspBI | CTAG | 4 cut(s) | 409, 694, 840, 891 |
| GluI | GCNGC | 1 cut(s) | 633 |
| GsaI | CCCAGC | 1 cut(s) | 807 |
| GsuI | CTGGAG | 1 cut(s) | 355 |
| HaeIII | GGCC | 2 cut(s) | 616, 802 |
| HapII | CCGG | 1 cut(s) | 927 |
| HgaI | GACGC | 1 cut(s) | 576 |
| Hin1I | GRCGYC | 1 cut(s) | 718 |
| Hin1II | CATG | 2 cut(s) | 554, 1007 |
| HincII | GTYRAC | 1 cut(s) | 1040 |
| HindII | GTYRAC | 1 cut(s) | 1040 |
| HindIII | AAGCTT | 1 cut(s) | 96 |
| HinfI | GANTC | 3 cut(s) | 233, 545, 672 |
| HpaII | CCGG | 1 cut(s) | 927 |
| HphI | GGTGA | 3 cut(s) | 197, 294, 680 |
| Hpy166II | GTNNAC | 3 cut(s) | 143, 749, 1040 |
| Hpy188I | TCNGA | 2 cut(s) | 73, 484 |
| Hpy188III | TCNNGA | 2 cut(s) | 63, 1053 |
| Hpy8I | GTNNAC | 3 cut(s) | 143, 749, 1040 |
| HpyAV | CCTTC | 8 cut(s) | 314, 365, 424, 615, 697, 782, 858, 1059 |
| HpyCH4III | ACNGT | 2 cut(s) | 473, 746 |
| HpyCH4IV | ACGT | 5 cut(s) | 251, 365, 592, 718, 852 |
| HpyCH4V | TGCA | 8 cut(s) | 20, 494, 512, 536, 554, 749, 875, 1034 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 342, 351 |
| HpyF3I | CTNAG | 3 cut(s) | 481, 830, 979 |
| HpySE526I | ACGT | 5 cut(s) | 251, 365, 592, 718, 852 |
| Hsp92I | GRCGYC | 1 cut(s) | 718 |
| Hsp92II | CATG | 2 cut(s) | 554, 1007 |
| KpnI | GGTACC | 1 cut(s) | 248 |
| Kzo9I | GATC | 3 cut(s) | 59, 299, 706 |
| LmnI | GCTCC | 1 cut(s) | 401 |
| Lsp1109I | GCAGC | 1 cut(s) | 619 |
| LweI | GCATC | 1 cut(s) | 523 |
| MaeI | CTAG | 4 cut(s) | 409, 694, 840, 891 |
| MaeII | ACGT | 5 cut(s) | 251, 365, 592, 718, 852 |
| MaeIII | GTNAC | 1 cut(s) | 588 |
| MalI | GATC | 3 cut(s) | 61, 301, 708 |
| MboI | GATC | 3 cut(s) | 59, 299, 706 |
| MhlI | GDGCHC | 1 cut(s) | 751 |
| MluCI | AATT | 5 cut(s) | 79, 308, 419, 528, 775 |
| MmeI | TCCRAC | 1 cut(s) | 297 |
| MnlI | CCTC | 8 cut(s) | 128, 199, 289, 379, 409, 553, 778, 976 |
| Mph1103I | ATGCAT | 1 cut(s) | 22 |
| MseI | TTAA | 4 cut(s) | 100, 468, 931, 1024 |
| MslI | CAYNNNNRTG | 2 cut(s) | 744, 754 |
| MspCI | CTTAAG | 1 cut(s) | 99 |
| MspI | CCGG | 1 cut(s) | 927 |
| MspR9I | CCNGG | 6 cut(s) | 241, 289, 373, 815, 857, 927 |
| MvaI | CCWGG | 5 cut(s) | 241, 289, 373, 815, 857 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 342, 351 |
| NciI | CCSGG | 1 cut(s) | 927 |
| NdeII | GATC | 3 cut(s) | 59, 299, 706 |
| NlaIII | CATG | 2 cut(s) | 554, 1007 |
| NlaIV | GGNNCC | 2 cut(s) | 246, 397 |
| NmuCI | GTSAC | 1 cut(s) | 588 |
| NsiI | ATGCAT | 1 cut(s) | 22 |
| NspV | TTCGAA | 2 cut(s) | 417, 780 |
| OliI | CACNNNNGTG | 1 cut(s) | 744 |
| PfeI | GAWTC | 3 cut(s) | 233, 545, 672 |
| PfoI | TCCNGGA | 2 cut(s) | 813, 855 |
| PkrI | GCNGC | 1 cut(s) | 634 |
| PmaCI | CACGTG | 1 cut(s) | 593 |
| PmlI | CACGTG | 1 cut(s) | 593 |
| Ppu21I | YACGTR | 1 cut(s) | 593 |
| Psp6I | CCWGG | 5 cut(s) | 239, 287, 371, 813, 855 |
| PspCI | CACGTG | 1 cut(s) | 593 |
| PspFI | CCCAGC | 1 cut(s) | 803 |
| PspGI | CCWGG | 5 cut(s) | 239, 287, 371, 813, 855 |
| PspN4I | GGNNCC | 2 cut(s) | 246, 397 |
| PspPI | GGNCC | 2 cut(s) | 615, 801 |
| RsaI | GTAC | 3 cut(s) | 3, 144, 246 |
| RsaNI | GTAC | 3 cut(s) | 2, 143, 245 |
| RseI | CAYNNNNRTG | 2 cut(s) | 744, 754 |
| SaqAI | TTAA | 4 cut(s) | 100, 468, 931, 1024 |
| SatI | GCNGC | 1 cut(s) | 633 |
| Sau3AI | GATC | 3 cut(s) | 59, 299, 706 |
| Sau96I | GGNCC | 2 cut(s) | 615, 801 |
| ScrFI | CCNGG | 6 cut(s) | 241, 289, 373, 815, 857, 927 |
| SduI | GDGCHC | 1 cut(s) | 751 |
| SfaNI | GCATC | 1 cut(s) | 523 |
| SfuI | TTCGAA | 2 cut(s) | 417, 780 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 744, 754 |
| SmlI | CTYRAG | 2 cut(s) | 99, 349 |
| SmoI | CTYRAG | 2 cut(s) | 99, 349 |
| Sse9I | AATT | 5 cut(s) | 79, 308, 419, 528, 775 |
| SspMI | CTAG | 4 cut(s) | 409, 694, 840, 891 |
| StyD4I | CCNGG | 6 cut(s) | 239, 287, 371, 813, 855, 925 |
| StyI | CCWWGG | 2 cut(s) | 255, 724 |
| TaaI | ACNGT | 2 cut(s) | 473, 746 |
| TaiI | ACGT | 5 cut(s) | 254, 368, 595, 721, 855 |
| TaqI | TCGA | 2 cut(s) | 417, 780 |
| TasI | AATT | 5 cut(s) | 79, 308, 419, 528, 775 |
| TfiI | GAWTC | 3 cut(s) | 233, 545, 672 |
| Tru1I | TTAA | 4 cut(s) | 100, 468, 931, 1024 |
| Tru9I | TTAA | 4 cut(s) | 100, 468, 931, 1024 |
| TscAI | CASTG | 1 cut(s) | 127 |
| TseFI | GTSAC | 1 cut(s) | 588 |
| TseI | GCWGC | 1 cut(s) | 632 |
| Tsp45I | GTSAC | 1 cut(s) | 588 |
| TspDTI | ATGAA | 4 cut(s) | 343, 415, 750, 772 |
| TspRI | CASTG | 1 cut(s) | 127 |
| Vha464I | CTTAAG | 1 cut(s) | 99 |
| VneI | GTGCAC | 1 cut(s) | 747 |
| XapI | RAATTY | 1 cut(s) | 419 |
| XspI | CTAG | 4 cut(s) | 409, 694, 840, 891 |
| ZraI | GACGTC | 1 cut(s) | 719 |
| Zsp2I | ATGCAT | 1 cut(s) | 22 |