transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 64 - 157 | 6.1e-23 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 83 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 228 |
| AclWI | GGATC | 1 cut(s) | 101 |
| AcsI | RAATTY | 3 cut(s) | 284, 609, 670 |
| AcuI | CTGAAG | 1 cut(s) | 195 |
| AcyI | GRCGYC | 1 cut(s) | 80 |
| AfaI | GTAC | 1 cut(s) | 404 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 90, 228, 422, 579 |
| AgsI | TTSAA | 3 cut(s) | 50, 211, 443 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 323, 355 |
| AluBI | AGCT | 2 cut(s) | 179, 380 |
| AluI | AGCT | 2 cut(s) | 179, 380 |
| Alw26I | GTCTC | 2 cut(s) | 470, 709 |
| AlwI | GGATC | 1 cut(s) | 101 |
| ApeKI | GCWGC | 1 cut(s) | 689 |
| ApoI | RAATTY | 3 cut(s) | 284, 609, 670 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 285 |
| BbsI | GAAGAC | 1 cut(s) | 594 |
| BbvI | GCAGC | 1 cut(s) | 676 |
| BccI | CCATC | 2 cut(s) | 29, 455 |
| BcoDI | GTCTC | 2 cut(s) | 470, 709 |
| BisI | GCNGC | 1 cut(s) | 690 |
| BlsI | GCNGC | 1 cut(s) | 691 |
| BpiI | GAAGAC | 1 cut(s) | 594 |
| BpmI | CTGGAG | 1 cut(s) | 525 |
| BpuEI | CTTGAG | 1 cut(s) | 311 |
| BsaHI | GRCGYC | 1 cut(s) | 80 |
| BsaI | GGTCTC | 1 cut(s) | 470 |
| BsaJI | CCNNGG | 2 cut(s) | 5, 222 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 225, 255 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 90, 228, 422, 579 |
| BseDI | CCNNGG | 2 cut(s) | 5, 222 |
| BseGI | GGATG | 1 cut(s) | 63 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 90, 228, 422, 579 |
| BseMII | CTCAG | 1 cut(s) | 638 |
| BseXI | GCAGC | 1 cut(s) | 676 |
| BseYI | CCCAGC | 1 cut(s) | 422 |
| BslFI | GGGAC | 1 cut(s) | 52 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 90, 228, 422, 579 |
| BsmAI | GTCTC | 2 cut(s) | 470, 709 |
| BsmFI | GGGAC | 1 cut(s) | 52 |
| BsmI | GAATGC | 1 cut(s) | 499 |
| Bso31I | GGTCTC | 1 cut(s) | 470 |
| Bsp1407I | TGTACA | 1 cut(s) | 402 |
| Bsp143I | GATC | 1 cut(s) | 106 |
| BspCNI | CTCAG | 1 cut(s) | 637 |
| BspPI | GGATC | 1 cut(s) | 101 |
| BspTNI | GGTCTC | 1 cut(s) | 470 |
| BsrGI | TGTACA | 1 cut(s) | 402 |
| BssECI | CCNNGG | 2 cut(s) | 5, 222 |
| BssMI | GATC | 1 cut(s) | 106 |
| BssNI | GRCGYC | 1 cut(s) | 80 |
| BssT1I | CCWWGG | 2 cut(s) | 5, 222 |
| Bst4CI | ACNGT | 2 cut(s) | 104, 390 |
| Bst6I | CTCTTC | 3 cut(s) | 175, 313, 712 |
| BstACI | GRCGYC | 1 cut(s) | 80 |
| BstAUI | TGTACA | 1 cut(s) | 402 |
| BstDEI | CTNAG | 1 cut(s) | 624 |
| BstF5I | GGATG | 1 cut(s) | 63 |
| BstKTI | GATC | 1 cut(s) | 109 |
| BstMAI | GTCTC | 2 cut(s) | 470, 709 |
| BstMBI | GATC | 1 cut(s) | 106 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 364, 536, 653, 686 |
| BstNSI | RCATGY | 1 cut(s) | 118 |
| BstV1I | GCAGC | 1 cut(s) | 676 |
| BstV2I | GAAGAC | 1 cut(s) | 594 |
| BtsCI | GGATG | 1 cut(s) | 63 |
| BtsIMutI | CAGTG | 1 cut(s) | 109 |
| Csp6I | GTAC | 1 cut(s) | 403 |
| CviAII | CATG | 7 cut(s) | 89, 115, 141, 228, 374, 419, 712 |
| CviQI | GTAC | 1 cut(s) | 403 |
| DdeI | CTNAG | 1 cut(s) | 624 |
| DpnI | GATC | 1 cut(s) | 108 |
| DpnII | GATC | 1 cut(s) | 106 |
| Eam1104I | CTCTTC | 3 cut(s) | 175, 313, 712 |
| EarI | CTCTTC | 3 cut(s) | 175, 313, 712 |
| Eco130I | CCWWGG | 2 cut(s) | 5, 222 |
| Eco31I | GGTCTC | 1 cut(s) | 470 |
| Eco57I | CTGAAG | 1 cut(s) | 195 |
| EcoT14I | CCWWGG | 2 cut(s) | 5, 222 |
| EcoT22I | ATGCAT | 2 cut(s) | 120, 499 |
| ErhI | CCWWGG | 2 cut(s) | 5, 222 |
| FaeI | CATG | 7 cut(s) | 92, 118, 144, 231, 377, 422, 715 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 176, 208 |
| FaqI | GGGAC | 1 cut(s) | 52 |
| FatI | CATG | 7 cut(s) | 88, 114, 140, 227, 373, 418, 711 |
| Fnu4HI | GCNGC | 1 cut(s) | 690 |
| FokI | GGATG | 1 cut(s) | 50 |
| Fsp4HI | GCNGC | 1 cut(s) | 690 |
| GluI | GCNGC | 1 cut(s) | 690 |
| GsaI | CCCAGC | 1 cut(s) | 426 |
| GsuI | CTGGAG | 1 cut(s) | 525 |
| Hin1I | GRCGYC | 1 cut(s) | 80 |
| Hin1II | CATG | 7 cut(s) | 92, 118, 144, 231, 377, 422, 715 |
| HindIII | AAGCTT | 1 cut(s) | 378 |
| HinfI | GANTC | 4 cut(s) | 316, 431, 484, 569 |
| Hpy166II | GTNNAC | 2 cut(s) | 267, 405 |
| Hpy188I | TCNGA | 3 cut(s) | 161, 175, 627 |
| Hpy188III | TCNNGA | 1 cut(s) | 328 |
| Hpy8I | GTNNAC | 2 cut(s) | 267, 405 |
| HpyAV | CCTTC | 2 cut(s) | 205, 449 |
| HpyCH4III | ACNGT | 2 cut(s) | 104, 390 |
| HpyCH4IV | ACGT | 2 cut(s) | 80, 263 |
| HpyCH4V | TGCA | 6 cut(s) | 12, 118, 277, 323, 497, 700 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 364, 536, 653, 686 |
| HpyF3I | CTNAG | 1 cut(s) | 624 |
| HpySE526I | ACGT | 2 cut(s) | 80, 263 |
| Hsp92I | GRCGYC | 1 cut(s) | 80 |
| Hsp92II | CATG | 7 cut(s) | 92, 118, 144, 231, 377, 422, 715 |
| Kzo9I | GATC | 1 cut(s) | 106 |
| LmnI | GCTCC | 1 cut(s) | 652 |
| LpnPI | CCDG | 4 cut(s) | 258, 263, 408, 489 |
| Lsp1109I | GCAGC | 1 cut(s) | 676 |
| MaeII | ACGT | 2 cut(s) | 80, 263 |
| MaeIII | GTNAC | 1 cut(s) | 186 |
| MalI | GATC | 1 cut(s) | 108 |
| MboI | GATC | 1 cut(s) | 106 |
| MboII | GAAGA | 6 cut(s) | 44, 162, 300, 599, 679, 699 |
| MfeI | CAATTG | 1 cut(s) | 651 |
| MluCI | AATT | 5 cut(s) | 272, 284, 609, 651, 670 |
| MlyI | GAGTC | 2 cut(s) | 310, 493 |
| MnlI | CCTC | 7 cut(s) | 69, 77, 155, 316, 426, 500, 597 |
| Mph1103I | ATGCAT | 2 cut(s) | 120, 499 |
| MroXI | GAANNNNTTC | 1 cut(s) | 285 |
| MseI | TTAA | 3 cut(s) | 675, 695, 724 |
| MunI | CAATTG | 1 cut(s) | 651 |
| Mva1269I | GAATGC | 1 cut(s) | 499 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 364, 536, 653, 686 |
| NdeII | GATC | 1 cut(s) | 106 |
| NlaIII | CATG | 7 cut(s) | 92, 118, 144, 231, 377, 422, 715 |
| NsiI | ATGCAT | 2 cut(s) | 120, 499 |
| NspI | RCATGY | 1 cut(s) | 118 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 518 |
| PctI | GAATGC | 1 cut(s) | 499 |
| PdmI | GAANNNNTTC | 1 cut(s) | 285 |
| PfeI | GAWTC | 2 cut(s) | 431, 569 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 228 |
| PkrI | GCNGC | 1 cut(s) | 691 |
| PleI | GAGTC | 2 cut(s) | 310, 492 |
| PpsI | GAGTC | 2 cut(s) | 310, 492 |
| PspFI | CCCAGC | 1 cut(s) | 422 |
| RsaI | GTAC | 1 cut(s) | 404 |
| RsaNI | GTAC | 1 cut(s) | 403 |
| SaqAI | TTAA | 3 cut(s) | 675, 695, 724 |
| SatI | GCNGC | 1 cut(s) | 690 |
| Sau3AI | GATC | 1 cut(s) | 106 |
| SchI | GAGTC | 2 cut(s) | 310, 493 |
| SetI | ASST | 9 cut(s) | 11, 47, 61, 83, 166, 181, 266, 382, 441 |
| SmlI | CTYRAG | 1 cut(s) | 326 |
| SmoI | CTYRAG | 1 cut(s) | 326 |
| Sse9I | AATT | 5 cut(s) | 272, 284, 609, 651, 670 |
| StyI | CCWWGG | 2 cut(s) | 5, 222 |
| TaaI | ACNGT | 2 cut(s) | 104, 390 |
| TaiI | ACGT | 2 cut(s) | 83, 266 |
| TaqI | TCGA | 1 cut(s) | 521 |
| TasI | AATT | 5 cut(s) | 272, 284, 609, 651, 670 |
| TatI | WGTACW | 1 cut(s) | 402 |
| TfiI | GAWTC | 2 cut(s) | 431, 569 |
| Tru1I | TTAA | 3 cut(s) | 675, 695, 724 |
| Tru9I | TTAA | 3 cut(s) | 675, 695, 724 |
| TscAI | CASTG | 1 cut(s) | 109 |
| TseI | GCWGC | 1 cut(s) | 689 |
| TspDTI | ATGAA | 4 cut(s) | 77, 390, 461, 582 |
| TspRI | CASTG | 1 cut(s) | 109 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 228 |
| XapI | RAATTY | 3 cut(s) | 284, 609, 670 |
| XceI | RCATGY | 1 cut(s) | 118 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 118 |
| XmnI | GAANNNNTTC | 1 cut(s) | 285 |
| ZraI | GACGTC | 1 cut(s) | 81 |
| Zsp2I | ATGCAT | 2 cut(s) | 120, 499 |