Rroxscaffold_1G00031010

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000013
Physical Location & Seq
Forward (+)
42525270 .. 42891662
366393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031010.1

Sequence Viewer

Length: 3834 bp
ATGGCTGAGACTATTAGGCAACTGTCTAATCCTACAGGTGGGGGTGCTGCGCCCTTATGCATTGCCTATCCAGAACCAGGAGAGGGGCTTAATGATGATTTTGAGTTAAAGAGTGGGTTTCTGCATCACCTACCCAAGTTTCATGGGATGAGTAGTGAAGACACCAACAAGCATCTCAAGGAGTTCGAGTTTGTCTGTGGGAGTATGTGCCCTAAAGGAGCTGATATCAATATCTTGAAGATGAAGGCATTTCCCTTTACTTTGGAGGACAAGGCCAAGACTTGGCTATTTGAGCTGTCTGCTGGGACTATCAACACTTGGGATAGGATGAAGGGCGAGTTCCTTACGAAGTACTTTCCTGCCTCAAAGGTCACTGTTTTGAGGAAGCAGATTAGTGGAATTACGCAAGGACATGAGGAGAATTTCTGCAATTATTGGGACAGGTTTAAGAGCCTTGCAGCATCATGCCCTAACCATGGGATGAGTGAGGGGTCCCTCCTTACCTATTTTTATGAAGGACTCACCGCTAATGAGCGTGGTCTGTTAGATGCTGCTGCTGGAGGATCCTTTATGGATAAGACACCTGCTGATGCCAAGGTGCTACTTACTAATCGTGCACTAAACTATCAACAGTATGAGGGGCTTACTCATCTCATGAACCAAGTGATAACTTCCAAGGGACCAAGTGCAACGGTGGCTTGTGGGGTATGCTCTATGCAAGGGCATGTTACGGATCAATGCCCCCAACTTAATGAAAATGGAGGATGGGAATCTGCAAATGCTATTGGAGGGTATCAAGGAGGATATCAACGTCCTAGGCATGACCCTTATTCTAATACCTACAACCCGTGCTGGCGGGACCACCCCAACTTCAAGTGGACCAACAATGATAACGTTCAGAATCCTCTTGGTGGGAACTTCCAACGTCCTCAAGGGCCTTCATTCCAAGGACCATCTTTTCAAAGGCCTTACATGCCTCCTCCTCCACAGAACTCGGGACCTTCCATGTCCCACTATGACAAAACGTTGGAAGCCTTGACTAGTTCGACCCAAGGACAACAGACCCATACCAAGGACATTGCAGAGCTCAAGAAGCAAATGGGACAAGTGGTGGACTTCATGACCAAGTTTCATGAGAGTGGTAAGCTTCCGAGCAACACAATTCCAAACCCAAAGGGAGGCTTTGAGAATGCATCAGTTGTGACTACAAGGAGTGGAAAAGTGTTCATGGATCAACCAAAAGGATCAAGGAAGGCCCAAGTGAACATAGAGATTAAGGAAGACCAAGAACCCACCAAGTTGGGTATTGAGAAGGACCCTGCAACGTCCAAGGAAGAGACCAAGGCGTCCTCACCATTAAAGGCAAAACCGGAGGTTAAAGGTAGTAATTCTAACTTGTCAAATTCGGTTATTGCTAACCCTTCTTCTTCTTGCATGCCCTTCCCACGCAGGTTTGCCCAATCTAAGAAGGATGAAAGTGACCAAGCTATCTTGGACACTTTCAAGAAGGTGCAAGTAAACTTACCCCTCCTAGAGGCCATCAAGCAAGTCCCTAAGTATGCCAAGTTCCTCAAAGAGCTCTGCACTACTAGAAGAGTAAACCGTGAAAAGGAGGTGGTAAAGGTAAGTGAGAATGAGGGGTCTAAACCAACTAGGGAGGCTCAACGCCGTCTCAACCCTCCAATGATGGAAGTTGTGAAGAAGGAGGTTATCAAACTCCTTGATTGTGGGGTAATCTACCCCATTTCGGACTCCAAGTGGGTCTCCCCAGTTCAGGTCGTGCCCAAGAAATCTGGGATCACCGTGGTGAAGAATGCCGAGAACGAATTAGTGCCCCAAAGAACTGTGACTGGACATCGAGTTTGTATTGATTATAGGAAGCTCAACGCCACTACTAGGAAGGACCACTTTCCCTTGCCATTCATTGATCAGATGCTTGAGAGGTTAGCTGGCTATGAGTTCTATTGCTTTCTCGATGGATATTCTGGTTACAACCAAATCGCCATTGCTAATGAGGATCAAGAGAAAACAACCTTCACTTGTCCTTTTGGAACGTTTGCCTACAGAAGAATGCCATTTGGACTATGCAACGCCCCAGGTACGTTTCAAAGGTGCATGGTAAGTATCTTTTCTGATTTTATTGAAAAAATTATTGAAGTTTTTATGGATGACTTTTCTGTCTTTGGTAAAGATTTCGAAAATTGCTTAAGTAACTTAGAATTGATACTTGAACGTTGTGAAGAAACTAACCTTGTTTTAAATTGGGAAAAATGTCACTTTATGGTTAAACAAGGCATAGTTTTAGGGCATATTGTTTCTAAACGTGGAATTGAAGTAGATAAAGCTAAAGTAGATCTTGTTAGATACTTACCATACCCCACAAGTGTGAGGGAGGTCCGTTCTTTTCTTGGACATGCAGGTTTCTACAGGCGCTTTATCAAGGACTTTTCCAAGATTTCTAGGCCCCTATGTCGTCTTCTCCAAAAGGATGTGGCGTTTGAGTTCAATGAGGATTGCAAGAAGGCATTCAACACTTTGAAGGAGCTTCTAACGTCTGCACCAATTATGCTTCCACCAGATTGGTCTCTTCCCTTTGAGATCATGTGTGACGCTTCAGATTATGCAGTTGGGGCCGTGCTAGGTCAAAGGAAGGACAAGAAGCCCTATGCCATCTACTACGCATCAAGAACCCTCAATGATGCTCAACTCAATTACTCTACAACTGAAAAAGAACTTTTAGCTGTTGTTTTTGCCTTAGAAAAATTTAGATCTTATTTATTGGGTACTAAAGTTATTGTTTATTCTGATCATGCAGCTTTAAGGTACCTAATGTCAAAGAAGGAGGCCAAACCTAGGCTAATTCGTTGGATACTCTTGCTTCAAGAGTTTGATGTGGAGATCAAGGATAAGAAGGGTTCAGAGAACGTTGTGGCTGACCATTTGAGTAGACTAGTGAGTGAGGAGGACGCCATACCCTTGGTGGAGATGTTTCCGGATGAACAACTCTTCGGAATCCAGGTAAGTGAGCCTTGGTATGCAGATATTGTTAATTATTTGGTATCTAAAACGTTCCCTAGTGATATGTTGCATGCTCAACGTGAAAGACTTAAGACTTTAGCTAGGCAATATGTTTGGGATGATCCTTATTTGTGGAAATATGGTTCTGATAAATTGATAAGGAGATGTGTTTCTACACCTTATCATCCTCAAACGAGTGGACAGGCAGAAGTTTCAAATAGGGAGATCAAGAGGATACTTGAGAAAACTGTAGGACCTTCAAGAAAGGATTGGAGCCAACGTTTGGAGGATGCATTGTGGGCATATAGGACGGCTTTCAAGACGCCAATTGGGATGTCTCCATTTCGTTTGGTGTATGGGAAGGCGTGCCACTTACCTGTGGAATTGGAACATAGAGCTTGGTGGGCAGTTAAGACGTTCAACATGGACTTGGATGAAGCTGGACTTCATAGGAAGTTGCAACTTAATGAGCTTGAGGAAATTCGTAATGAGGCCTATGATAGTGCTCGGATTTACAAGGAGAAGACAAAGGCTTTTCATGATAAGATGATTCGCGGAAAGACCTTTGTAGTTGGTCAAAAAGTTCTTCTATTTCATTCTAGATTAAGACTTTTTCCTGGTAAGTTGCGTTCTAGATGGGTTGGTCCTTTTATTGTTACTAAAGTTTTTCCTCATGGTGCTATACAGATAAGGAGCCCTGCAACTGGAAGTGACTTCAAGGTAAATGGCCATCGTCTTAAGCCTTACTATGAGGCGTTTGTGGAGCACAATGTGGAGGATGTACCCCTTCAAGAGGCGCCACAACCAGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

1277

Amino Acids

145.15

Weight (kDa)

8.72

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 83 - 175 1.9e-21 Retrotransposon gag protein
RVT_1 PF00078 616 - 771 1.6e-28 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 835 - 933 2.4e-34 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 860 - 963 1.2e-37 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000013)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00750
fragaria_vesca FvH4_1g09710 FvH4_1g27931 FvH4_1g27951 FvH4_1g27952 FvH4_1g27956 FvH4_1g28083 FvH4_1g28442 FvH4_1g28532 FvH4_1g29491 FvH4_1g29492 FvH4_1g29493 FvH4_1g29494 FvH4_1g29682 FvH4_1g29685 FvH4_1g29771 FvH4_2g08113 FvH4_2g08114 FvH4_2g14571 FvH4_2g22452 FvH4_2g35543 FvH4_3g01281 FvH4_3g19211 FvH4_3g19212 FvH4_3g19232 FvH4_3g21342 FvH4_3g21381 FvH4_3g22811 FvH4_3g26051 FvH4_3g26316 FvH4_3g26555 FvH4_3g31201 FvH4_3g31892 FvH4_3g32071 FvH4_3g36983 FvH4_3g40761 FvH4_3g44964 FvH4_3g44965 FvH4_4g02082 FvH4_4g03221 FvH4_4g05351 FvH4_4g05352 FvH4_4g08761 FvH4_4g08973 FvH4_4g09161 FvH4_4g09241 FvH4_4g09322 FvH4_4g10092 FvH4_4g10251 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14302 FvH4_4g14401 FvH4_4g14402 FvH4_4g14403 FvH4_4g14569 FvH4_4g15806 FvH4_4g15807 FvH4_4g15808 FvH4_4g16144 FvH4_4g16145 FvH4_4g16146 FvH4_4g17204 FvH4_4g17205 FvH4_4g17206 FvH4_4g17207 FvH4_4g17692 FvH4_4g24603 FvH4_5g22912 FvH4_5g34661 FvH4_6g00252 FvH4_6g00253 FvH4_6g18062 FvH4_6g22851 FvH4_6g22852 FvH4_6g32641 FvH4_6g36491 FvH4_6g36492 FvH4_6g37921 FvH4_6g48511 FvH4_7g01732 FvH4_7g01733 FvH4_7g03471 FvH4_7g04071 FvH4_7g04231 FvH4_7g12351 FvH4_7g14381 FvH4_7g20371 FvH4_7g20372 FvH4_7g22571 FvH4_7g25271 FvH4_7g25272 FvH4_7g25273
malus_domestica MD00G1099500.v1.1 MD00G1134900.v1.1 MD00G1199900.v1.1 MD02G1203700.v1.1 MD02G1206700.v1.1 MD07G1097600.v1.1 MD08G1099400.v1.1 MD08G1149900.v1.1 MD08G1150000.v1.1 MD08G1150100.v1.1 MD10G1200800.v1.1 MD15G1306700.v1.1 MD15G1306800.v1.1 MD15G1321900.v1.1 MD16G1251200.v1.1 MD17G1170700.v1.1 MD17G1170900.v1.1
pyrus_communis pycom01g00440 pycom01g00890 pycom01g01140 pycom01g01590 pycom01g01620 pycom01g01640 pycom01g01740 pycom01g02310 pycom01g02760 pycom01g03670 pycom01g04180 pycom01g04200 pycom02g18120 pycom02g18300 pycom02g22040 pycom03g09950 pycom03g10150 pycom03g11910 pycom03g11940 pycom03g18650 pycom04g06630 pycom04g06990 pycom04g07610 pycom04g07750 pycom04g08190 pycom04g09650 pycom04g10380 pycom04g12350 pycom04g12360 pycom05g01490 pycom05g03640 pycom05g06240 pycom05g06610 pycom05g08950 pycom06g05580 pycom06g06900 pycom06g07080 pycom07g10140 pycom07g10970 pycom07g13410 pycom07g15510 pycom07g15520 pycom08g13910 pycom09g12650 pycom09g13010 pycom09g13630 pycom09g13780 pycom09g13860 pycom09g14280 pycom10g07230 pycom1125g00040 pycom1153g00020 pycom11g09720 pycom11g09730 pycom11g09740 pycom11g16740 pycom11g17060 pycom11g20170 pycom1217g00060 pycom12382g00040 pycom12405g00030 pycom12406g00010 pycom12406g00020 pycom12419g00290 pycom12420g00030 pycom12420g00060 pycom12420g00070 pycom12420g00080 pycom12420g00110 pycom12423g00120 pycom12424g00040 pycom12424g00050 pycom12426g00020 pycom12426g00150 pycom12426g00160 pycom12426g00320 pycom12426g00650 pycom12426g00730 pycom12429g00030 pycom12439g00060 pycom12463g00030 pycom12468g00010 pycom12526g00030 pycom12526g00050 pycom12534g00010 pycom12556g00050 pycom12561g00280 pycom12568g00070 pycom12569g00010 pycom1256g00080 pycom1256g00120 pycom1256g00270 pycom1256g00280 pycom12575g00020 pycom12575g00060 pycom12577g00010 pycom12578g00010 pycom12589g00010 pycom12594g00010 pycom12596g00020 pycom12613g00040 pycom12613g00050 pycom12621g00020 pycom12630g00030 pycom12630g00090 pycom12633g00030 pycom12658g00080 pycom12659g00130 pycom12659g00240 pycom12661g00180 pycom12674g00010 pycom12675g00080 pycom12698g00020 pycom12g05860 pycom12g09040 pycom12g09680 pycom12g11990 pycom12g12930 pycom12g12940 pycom12g14090 pycom13g09490 pycom13g17080 pycom13g21650 pycom13g21860 pycom13g22080 pycom13g22290 pycom13g22300 pycom13g23220 pycom13g24040 pycom13g24190 pycom13g24790 pycom13g25360 pycom13g25680 pycom13g25770 pycom13g25780 pycom13g25910 pycom13g26110 pycom13g26270 pycom13g26380 pycom13g26390 pycom13g26480 pycom13g26920 pycom13g27220 pycom13g28550 pycom13g29330 pycom14g07990 pycom14g08020 pycom14g08690 pycom14g08860 pycom14g10000 pycom1534g00030 pycom15g21840 pycom15g29900 pycom15g31990 pycom15g34410 pycom1604g00100 pycom1667g00020 pycom16g19300 pycom16g21890 pycom16g21940 pycom1729g00050 pycom1729g00170 pycom1735g00030 pycom1735g00060 pycom1735g00080 pycom17g11600 pycom17g11920 pycom17g12980 pycom17g15280 pycom17g16060 pycom17g16510 pycom17g17570 pycom17g17580 pycom17g17590 pycom17g17710 pycom17g17720 pycom17g17940 pycom17g18100 pycom17g18550 pycom17g18810 pycom1844g00050 pycom1844g00060 pycom1845g00030 pycom1845g00090 pycom1866g00040 pycom1867g00030 pycom1880g00080 pycom1903g00030 pycom1903g00050 pycom1903g00080 pycom2002g00080 pycom2177g00050 pycom2205g00030 pycom2217g00050 pycom2229g00020 pycom243g00100 pycom2596g00020 pycom2751g00010 pycom2821g00080 pycom2933g00010 pycom2989g00010 pycom323g00010 pycom420g00370 pycom420g00380 pycom420g00830 pycom436g00020 pycom436g00090 pycom436g00250 pycom436g00320 pycom505g00020 pycom505g00060 pycom505g00070 pycom510g00040 pycom5153684g00020 pycom5153684g00460 pycom531g00010 pycom531g00020 pycom556g00100 pycom608g00070 pycom808g00020 pycom808g00390 pycom808g00430 pycom808g00440 pycom808g00660 pycom808g00690 pycom889g00020 pycom889g00070 pycom920g00010 pycom992g00020 pycom992g00030
rosa_chinensis RchiOBHm_Chr0c01g0497691 RchiOBHm_Chr0c36g0502941 RchiOBHm_Chr1g0320831 RchiOBHm_Chr1g0320841 RchiOBHm_Chr1g0344611 RchiOBHm_Chr1g0358301 RchiOBHm_Chr1g0381281 RchiOBHm_Chr1g0381291 RchiOBHm_Chr2g0117701 RchiOBHm_Chr2g0130161 RchiOBHm_Chr2g0130421 RchiOBHm_Chr2g0132971 RchiOBHm_Chr2g0133871 RchiOBHm_Chr2g0154881 RchiOBHm_Chr2g0154911 RchiOBHm_Chr3g0450421 RchiOBHm_Chr3g0452811 RchiOBHm_Chr3g0469711 RchiOBHm_Chr3g0493781 RchiOBHm_Chr3g0495801 RchiOBHm_Chr4g0404441 RchiOBHm_Chr4g0405891 RchiOBHm_Chr4g0410431 RchiOBHm_Chr4g0415841 RchiOBHm_Chr4g0418061 RchiOBHm_Chr5g0043631 RchiOBHm_Chr6g0272771 RchiOBHm_Chr7g0180211 RchiOBHm_Chr7g0193951
rosa_multiflora Rmu_co8039452.1_g000001 Rmu_co8083434.1_g000001 Rmu_co8112738.1_g000001 Rmu_co8202386.1_g000001 Rmu_co8313305.1_g000001 Rmu_sc0000007.1_g000025 Rmu_sc0000083.1_g000007 Rmu_sc0000322.1_g000029 Rmu_sc0000516.1_g000040 Rmu_sc0000621.1_g000033 Rmu_sc0000914.1_g000005 Rmu_sc0001136.1_g000005 Rmu_sc0001306.1_g000046 Rmu_sc0001438.1_g000017 Rmu_sc0001438.1_g000018 Rmu_sc0001504.1_g000001 Rmu_sc0001675.1_g000001 Rmu_sc0001678.1_g000001 Rmu_sc0002082.1_g000080 Rmu_sc0002206.1_g000035 Rmu_sc0002457.1_g000001 Rmu_sc0003002.1_g000012 Rmu_sc0003232.1_g000021 Rmu_sc0003376.1_g000002 Rmu_sc0003432.1_g000001 Rmu_sc0003574.1_g000002 Rmu_sc0003753.1_g000023 Rmu_sc0004239.1_g000003 Rmu_sc0004866.1_g000020 Rmu_sc0004904.1_g000009 Rmu_sc0005470.1_g000003 Rmu_sc0005835.1_g000005 Rmu_sc0005925.1_g000002 Rmu_sc0006358.1_g000001 Rmu_sc0006366.1_g000022 Rmu_sc0006401.1_g000001 Rmu_sc0006489.1_g000001 Rmu_sc0006652.1_g000001 Rmu_sc0007038.1_g000014 Rmu_sc0007067.1_g000001 Rmu_sc0007480.1_g000005 Rmu_sc0008412.1_g000001 Rmu_sc0008719.1_g000001 Rmu_sc0009019.1_g000001 Rmu_sc0009438.1_g000008 Rmu_sc0009785.1_g000015 Rmu_sc0010170.1_g000002 Rmu_sc0012567.1_g000001 Rmu_sc0014039.1_g000002 Rmu_sc0014727.1_g000003 Rmu_sc0016222.1_g000001 Rmu_sc0017735.1_g000001 Rmu_sc0017868.1_g000001 Rmu_sc0017956.1_g000001 Rmu_sc0018810.1_g000001 Rmu_sc0019109.1_g000001 Rmu_sc0020243.1_g000001 Rmu_sc0020660.1_g000001 Rmu_sc0022433.1_g000001 Rmu_sc0022595.1_g000001 Rmu_sc0023258.1_g000001 Rmu_sc0024488.1_g000001 Rmu_sc0025858.1_g000001 Rmu_sc0026481.1_g000003 Rmu_sc0028000.1_g000001 Rmu_sc0031652.1_g000001 Rmu_sc0032644.1_g000001 Rmu_sc0033297.1_g000001 Rmu_sc0040410.1_g000001 Rmu_sc0042790.1_g000002 Rmu_ssc0000011.1_g000053 Rmu_ssc0000089.1_g000019 Rmu_ssc0000350.1_g000017
rosa_roxburghii Rroxscaffold_10G00433140 Rroxscaffold_1G00030920 Rroxscaffold_1G00030960 Rroxscaffold_1G00031010 Rroxscaffold_2G00085620 Rroxscaffold_2G00117570 Rroxscaffold_2G00117640 Rroxscaffold_3G00239020 Rroxscaffold_3G00245490 Rroxscaffold_4G00318740 Rroxscaffold_5G00333750 Rroxscaffold_5G00351140 Rroxscaffold_5G00351170 Rroxscaffold_6G00391220 Rroxscaffold_6G00391230 Rroxscaffold_7G00194870 Rroxscaffold_7G00196310 Rroxscaffold_7G00203910 Rroxscaffold_8G00436890 Rroxscaffold_9G00437900
rosa_rugosa Rorug04G0034000 Rorug04G0049300
rosa_samantha Rh2BG324800 Rh3CG286600 Rh4AG154200 Rh4BG060200 Rh5AG465000
rosa_wichuraiana Rw0G001700 Rw0G002220 Rw0G002610 Rw0G003900 Rw0G005180 Rw0G005190 Rw0G005330 Rw0G010320 Rw0G010460 Rw0G011800 Rw0G012250 Rw0G012750 Rw0G012760 Rw0G012770 Rw0G015330 Rw0G018210 Rw0G020550 Rw0G020700 Rw0G020810 Rw0G021790 Rw0G022660 Rw0G022910 Rw1G008700 Rw1G008870 Rw1G009360 Rw1G009610 Rw1G009750 Rw1G009760 Rw1G009910 Rw1G010630 Rw1G010650 Rw2G022280 Rw2G023370 Rw2G023960 Rw2G025190 Rw2G025550 Rw2G025590 Rw2G025620 Rw2G025720 Rw2G025730 Rw2G025790 Rw2G025810 Rw2G025880 Rw2G026750 Rw2G033860 Rw2G037040 Rw3G025490 Rw3G026360 Rw3G027500 Rw3G027510 Rw3G027820 Rw3G028390 Rw3G028500 Rw3G028640 Rw3G029070 Rw3G029140 Rw3G029220 Rw3G029610 Rw4G002830 Rw4G009210 Rw4G009560 Rw4G010400 Rw4G010860 Rw4G011150 Rw4G011260 Rw4G011700 Rw4G012670 Rw4G018460 Rw4G020770 Rw5G029790 Rw5G029800 Rw5G030040 Rw5G030860 Rw5G030940 Rw5G030950 Rw5G030970 Rw5G031090 Rw5G031230 Rw5G031240 Rw5G031290 Rw5G031330 Rw5G031340 Rw5G031350 Rw5G031360 Rw5G031420 Rw5G031430 Rw5G031470 Rw5G031530 Rw5G045200 Rw5G049340 Rw5G049830 Rw6G001320 Rw6G003070 Rw6G007640 Rw6G011560 Rw6G012460 Rw6G014020 Rw6G014530 Rw6G014590 Rw6G015150 Rw6G015160 Rw6G015200 Rw6G015210 Rw6G015220 Rw6G015270 Rw6G015280 Rw6G015310 Rw6G015330 Rw6G015400 Rw6G016140 Rw6G016410 Rw6G016860 Rw6G028980 Rw6G035110 Rw7G023030 Rw7G024040 Rw7G025740 Rw7G028390 Rw7G028530 Rw7G028600 Rw7G028610 Rw7G028620 Rw7G028630 Rw7G028640 Rw7G028920 Rw7G031450 Rw7G034150 Rw7G038570 Rw7G041520 Rw7G042470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 592
AasI GACNNNNNNGTC 2 cut(s) 1345, 2177
Acc36I ACCTGC 3 cut(s) 592, 1440, 2408
Acc65I GGTACC 1 cut(s) 2823
AccB1I GGYRCC 2 cut(s) 2823, 3814
AccB7I CCANNNNNTGG 2 cut(s) 282, 3301
AccI GTMKAC 1 cut(s) 2947
AccII CGCG 1 cut(s) 3573
AccIII TCCGGA 1 cut(s) 2992
AciI CCGC 3 cut(s) 525, 856, 3573
AclI AACGTT 7 cut(s) 894, 1025, 2054, 2233, 2925, 3068, 3298
AclWI GGATC 8 cut(s) 558, 571, 741, 1239, 1252, 1805, 2025, 3134
AcoI YGGCCR 1 cut(s) 3745
AcsI RAATTY 4 cut(s) 421, 1402, 2762, 3498
AcuI CTGAAG 1 cut(s) 2598
AcyI GRCGYC 4 cut(s) 1346, 2967, 3341, 3815
AdeI CACNNNGTG 1 cut(s) 3790
AfaI GTAC 5 cut(s) 353, 2101, 2785, 2825, 3801
AflII CTTAAG 3 cut(s) 2206, 3107, 3755
AhlI ACTAGT 2 cut(s) 1040, 2950
AjnI CCWGG 4 cut(s) 76, 2095, 3015, 3634
AleI CACNNNNGTG 2 cut(s) 1805, 2384
AloI GAACNNNNNNTCC 2 cut(s) 3145, 3177
Alw21I GWGCWC 5 cut(s) 619, 1089, 1581, 3526, 3786
Alw26I GTCTC 6 cut(s) 2, 1331, 1676, 1768, 2589, 3360
Alw44I GTGCAC 1 cut(s) 615
AlwI GGATC 8 cut(s) 558, 571, 741, 1239, 1252, 1805, 2025, 3134
Ama87I CYCGRG 1 cut(s) 994
Aor13HI TCCGGA 1 cut(s) 2992
ApaLI GTGCAC 1 cut(s) 615
ApeKI GCWGC 5 cut(s) 47, 458, 551, 554, 2813
ApoI RAATTY 4 cut(s) 421, 1402, 2762, 3498
ArsI GACNNNNNNTTYG 2 cut(s) 1845, 1877
Asp700I GAANNNNTTC 1 cut(s) 2525
Asp718I GGTACC 1 cut(s) 2823
AspA2I CCTAGG 2 cut(s) 815, 2852
AspLEI GCGC 3 cut(s) 52, 2433, 3817
AsuHPI GGTGA 5 cut(s) 119, 514, 1344, 1792, 1819
AsuII TTCGAA 1 cut(s) 2196
AvaI CYCGRG 1 cut(s) 994
AvrII CCTAGG 2 cut(s) 815, 2852
BaeGI GKGCMC 4 cut(s) 212, 619, 1785, 1836
BaeI ACNNNNGTAYC 2 cut(s) 2775, 2808
BalI TGGCCA 1 cut(s) 3747
BamHI GGATCC 1 cut(s) 563
BanI GGYRCC 2 cut(s) 2823, 3814
BanII GRGCYC 3 cut(s) 1089, 1581, 3716
BbsI GAAGAC 4 cut(s) 165, 1287, 2468, 3548
Bbv12I GWGCWC 5 cut(s) 619, 1089, 1581, 3526, 3786
BbvI GCAGC 5 cut(s) 34, 470, 538, 541, 2825
BccI CCATC 8 cut(s) 759, 961, 1547, 1681, 1970, 2678, 3648, 3756
BceAI ACGGC 3 cut(s) 1653, 2618, 3345
BciT130I CCWGG 4 cut(s) 78, 2097, 3017, 3636
BciVI GTATCC 2 cut(s) 2862, 3246
BclI TGATCA 2 cut(s) 1927, 2806
BcoDI GTCTC 6 cut(s) 2, 1331, 1676, 1768, 2589, 3360
BcuI ACTAGT 2 cut(s) 1040, 2950
BfmI CTRYAG 4 cut(s) 33, 2062, 2425, 3267
BfoI RGCGCY 2 cut(s) 2434, 3818
BfrI CTTAAG 3 cut(s) 2206, 3107, 3755
BfuAI ACCTGC 3 cut(s) 592, 1440, 2408
BfuI GTATCC 2 cut(s) 2862, 3246
BglII AGATCT 2 cut(s) 2353, 2768
BisI GCNGC 5 cut(s) 48, 459, 552, 555, 2814
BlnI CCTAGG 2 cut(s) 815, 2852
BlsI GCNGC 5 cut(s) 49, 460, 553, 556, 2815
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 4 cut(s) 78, 2097, 3017, 3636
BmeT110I CYCGRG 1 cut(s) 994
BmrFI CCNGG 4 cut(s) 78, 2097, 3017, 3636
BmrI ACTGGG 1 cut(s) 1763
BmuI ACTGGG 1 cut(s) 1763
BpiI GAAGAC 4 cut(s) 165, 1287, 2468, 3548
BpmI CTGGAG 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 2196
BpuEI CTTGAG 6 cut(s) 161, 915, 1073, 1958, 3278, 3512
BsaBI GATNNNNATC 1 cut(s) 769
BsaHI GRCGYC 4 cut(s) 1346, 2967, 3341, 3815
BsaI GGTCTC 3 cut(s) 1331, 1768, 2589
BsaWI WCCGGW 2 cut(s) 1369, 2992
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 3283, 3313
Bse1I ACTGG 3 cut(s) 1769, 1855, 3727
Bse3DI GCAATG 3 cut(s) 60, 1077, 2004
Bse8I GATNNNNATC 1 cut(s) 769
BseAI TCCGGA 1 cut(s) 2992
BseBI CCWGG 4 cut(s) 78, 2097, 3017, 3636
BseJI GATNNNNATC 1 cut(s) 769
BseMI GCAATG 3 cut(s) 60, 1077, 2004
BseNI ACTGG 3 cut(s) 1769, 1855, 3727
BseRI GAGGAG 4 cut(s) 431, 969, 972, 2975
BseSI GKGCMC 4 cut(s) 212, 619, 1785, 1836
BseXI GCAGC 5 cut(s) 34, 470, 538, 541, 2825
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 2 cut(s) 1567, 2541
Bsh1236I CGCG 1 cut(s) 3573
BshNI GGYRCC 2 cut(s) 2823, 3814
BsiHKAI GWGCWC 5 cut(s) 619, 1089, 1581, 3526, 3786
BsiHKCI CYCGRG 1 cut(s) 994
BsiSI CCGG 2 cut(s) 1370, 2993
BslFI GGGAC 9 cut(s) 319, 452, 478, 693, 872, 994, 1011, 1116, 1535
BsmAI GTCTC 6 cut(s) 2, 1331, 1676, 1768, 2589, 3360
BsmBI CGTCTC 1 cut(s) 1676
BsmFI GGGAC 9 cut(s) 319, 452, 478, 693, 872, 994, 1011, 1116, 1535
BsmI GAATGC 4 cut(s) 1195, 1819, 2076, 2525
Bso31I GGTCTC 3 cut(s) 1331, 1768, 2589
BsoBI CYCGRG 1 cut(s) 994
Bsp119I TTCGAA 1 cut(s) 2196
Bsp1286I GDGCHC 9 cut(s) 212, 619, 1089, 1581, 1785, 1836, 3526, 3716, 3786
Bsp13I TCCGGA 1 cut(s) 2992
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 3 cut(s) 525, 856, 3573
BspEI TCCGGA 1 cut(s) 2992
BspFNI CGCG 1 cut(s) 3573
BspHI TCATGA 4 cut(s) 654, 1119, 1132, 3556
BspMI ACCTGC 3 cut(s) 592, 1440, 2408
BspPI GGATC 8 cut(s) 558, 571, 741, 1239, 1252, 1805, 2025, 3134
BspT104I TTCGAA 1 cut(s) 2196
BspT107I GGYRCC 2 cut(s) 2823, 3814
BspTI CTTAAG 3 cut(s) 2206, 3107, 3755
BspTNI GGTCTC 3 cut(s) 1331, 1768, 2589
BsrDI GCAATG 3 cut(s) 60, 1077, 2004
BsrI ACTGG 3 cut(s) 1769, 1855, 3727
BssNI GRCGYC 4 cut(s) 1346, 2967, 3341, 3815
Bst2UI CCWGG 4 cut(s) 78, 2097, 3017, 3636
Bst4CI ACNGT 8 cut(s) 24, 376, 633, 694, 1604, 1804, 1846, 3268
Bst6I CTCTTC 4 cut(s) 1329, 1588, 2592, 3011
BstACI GRCGYC 4 cut(s) 1346, 2967, 3341, 3815
BstAFI CTTAAG 3 cut(s) 2206, 3107, 3755
BstBI TTCGAA 1 cut(s) 2196
BstC8I GCNNGC 5 cut(s) 854, 1436, 1951, 3090, 3385
BstDEI CTNAG 5 cut(s) 6, 1464, 1554, 2215, 2755
BstDSI CCRYGG 2 cut(s) 475, 1803
BstENI CCTNNNNNAGG 2 cut(s) 1532, 3809
BstFNI CGCG 1 cut(s) 3573
BstH2I RGCGCY 2 cut(s) 2434, 3818
BstHHI GCGC 3 cut(s) 52, 2433, 3817
BstMAI GTCTC 6 cut(s) 2, 1331, 1676, 1768, 2589, 3360
BstMWI GCNNNNNNNGC 7 cut(s) 292, 695, 973, 1093, 2630, 3317, 3422
BstNI CCWGG 4 cut(s) 78, 2097, 3017, 3636
BstNSI RCATGY 5 cut(s) 728, 976, 1438, 2417, 3092
BstSCI CCNGG 4 cut(s) 76, 2095, 3015, 3634
BstSFI CTRYAG 4 cut(s) 33, 2062, 2425, 3267
BstSLI GKGCMC 4 cut(s) 212, 619, 1785, 1836
BstUI CGCG 1 cut(s) 3573
BstV1I GCAGC 5 cut(s) 34, 470, 538, 541, 2825
BstV2I GAAGAC 4 cut(s) 165, 1287, 2468, 3548
BstX2I RGATCY 3 cut(s) 563, 2353, 2768
BstXI CCANNNNNNTGG 3 cut(s) 1300, 2580, 2977
BstYI RGATCY 3 cut(s) 563, 2353, 2768
BsuI GTATCC 2 cut(s) 2862, 3246
BtgI CCRYGG 2 cut(s) 475, 1803
BtsIMutI CAGTG 1 cut(s) 372
BveI ACCTGC 3 cut(s) 592, 1440, 2408
Cac8I GCNNGC 5 cut(s) 854, 1436, 1951, 3090, 3385
CciI TCATGA 4 cut(s) 654, 1119, 1132, 3556
CfoI GCGC 3 cut(s) 52, 2433, 3817
CseI GACGC 4 cut(s) 1335, 2618, 2975, 3349
Csp6I GTAC 5 cut(s) 352, 2100, 2784, 2824, 3800
CviQI GTAC 5 cut(s) 352, 2100, 2784, 2824, 3800
DdeI CTNAG 5 cut(s) 6, 1464, 1554, 2215, 2755
DinI GGCGCC 1 cut(s) 3816
DraI TTTAAA 1 cut(s) 2259
DraIII CACNNNGTG 1 cut(s) 3790
DrdI GACNNNNNNGTC 2 cut(s) 1345, 2177
DseDI GACNNNNNNGTC 2 cut(s) 1345, 2177
EaeI YGGCCR 1 cut(s) 3745
Eam1104I CTCTTC 4 cut(s) 1329, 1588, 2592, 3011
EarI CTCTTC 4 cut(s) 1329, 1588, 2592, 3011
Ecl136II GAGCTC 2 cut(s) 1087, 1579
Eco147I AGGCCT 2 cut(s) 967, 3512
Eco24I GRGCYC 3 cut(s) 1089, 1581, 3716
Eco31I GGTCTC 3 cut(s) 1331, 1768, 2589
Eco32I GATATC 2 cut(s) 226, 806
Eco53kI GAGCTC 2 cut(s) 1087, 1579
Eco57I CTGAAG 1 cut(s) 2598
Eco88I CYCGRG 1 cut(s) 994
EcoICRI GAGCTC 2 cut(s) 1087, 1579
EcoNI CCTNNNNNAGG 2 cut(s) 1532, 3809
EcoO109I RGGNCCY 6 cut(s) 492, 935, 998, 1315, 2463, 3272
EcoRII CCWGG 4 cut(s) 76, 2095, 3015, 3634
EcoRV GATATC 2 cut(s) 226, 806
EcoT22I ATGCAT 3 cut(s) 62, 1195, 3313
EcoT38I GRGCYC 3 cut(s) 1089, 1581, 3716
EgeI GGCGCC 1 cut(s) 3816
EheI GGCGCC 1 cut(s) 3816
Esp3I CGTCTC 1 cut(s) 1676
FaqI GGGAC 9 cut(s) 319, 452, 478, 693, 872, 994, 1011, 1116, 1535
FauI CCCGC 1 cut(s) 849
FbaI TGATCA 2 cut(s) 1927, 2806
FblI GTMKAC 1 cut(s) 2947
Fnu4HI GCNGC 5 cut(s) 48, 459, 552, 555, 2814
FriOI GRGCYC 3 cut(s) 1089, 1581, 3716
Fsp4HI GCNGC 5 cut(s) 48, 459, 552, 555, 2814
GlaI GCGC 3 cut(s) 51, 2432, 3816
GluI GCNGC 5 cut(s) 48, 459, 552, 555, 2814
GsaI CCCAGC 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 579
HaeII RGCGCY 2 cut(s) 2434, 3818
HapII CCGG 2 cut(s) 1370, 2993
HgaI GACGC 4 cut(s) 1335, 2618, 2975, 3349
HhaI GCGC 3 cut(s) 52, 2433, 3817
Hin1I GRCGYC 4 cut(s) 1346, 2967, 3341, 3815
Hin6I GCGC 3 cut(s) 50, 2431, 3815
HinP1I GCGC 3 cut(s) 50, 2431, 3815
HindIII AAGCTT 1 cut(s) 1145
HinfI GANTC 6 cut(s) 519, 770, 901, 1751, 3012, 3568
HpaII CCGG 2 cut(s) 1370, 2993
HphI GGTGA 5 cut(s) 119, 514, 1344, 1792, 1819
Hpy166II GTNNAC 8 cut(s) 617, 879, 1114, 1264, 1519, 1600, 2948, 3218
Hpy8I GTNNAC 8 cut(s) 617, 879, 1114, 1264, 1519, 1600, 2948, 3218
HpyCH4III ACNGT 8 cut(s) 24, 376, 633, 694, 1604, 1804, 1846, 3268
HpyF10VI GCNNNNNNNGC 7 cut(s) 292, 695, 973, 1093, 2630, 3317, 3422
HpyF3I CTNAG 5 cut(s) 6, 1464, 1554, 2215, 2755
Hsp92I GRCGYC 4 cut(s) 1346, 2967, 3341, 3815
HspAI GCGC 3 cut(s) 50, 2431, 3815
KasI GGCGCC 1 cut(s) 3814
KflI GGGWCCC 1 cut(s) 492
Kpn2I TCCGGA 1 cut(s) 2992
KpnI GGTACC 1 cut(s) 2827
Ksp22I TGATCA 2 cut(s) 1927, 2806
LmnI GCTCC 5 cut(s) 218, 2542, 3291, 3711, 3781
Lsp1109I GCAGC 5 cut(s) 34, 470, 538, 541, 2825
MfeI CAATTG 1 cut(s) 3345
MflI RGATCY 3 cut(s) 563, 2353, 2768
MhlI GDGCHC 9 cut(s) 212, 619, 1089, 1581, 1785, 1836, 3526, 3716, 3786
MlsI TGGCCA 1 cut(s) 3747
MluNI TGGCCA 1 cut(s) 3747
Mly113I GGCGCC 1 cut(s) 3815
MlyI GAGTC 2 cut(s) 513, 1745
MmeI TCCRAC 3 cut(s) 946, 1008, 2846
Mox20I TGGCCA 1 cut(s) 3747
Mph1103I ATGCAT 3 cut(s) 62, 1195, 3313
MroI TCCGGA 1 cut(s) 2992
MroXI GAANNNNTTC 1 cut(s) 2525
MscI TGGCCA 1 cut(s) 3747
MslI CAYNNNNRTG 3 cut(s) 1137, 1805, 2384
Msp20I TGGCCA 1 cut(s) 3747
MspCI CTTAAG 3 cut(s) 2206, 3107, 3755
MspI CCGG 2 cut(s) 1370, 2993
MspR9I CCNGG 4 cut(s) 78, 2097, 3017, 3636
MunI CAATTG 1 cut(s) 3345
Mva1269I GAATGC 4 cut(s) 1195, 1819, 2076, 2525
MvaI CCWGG 4 cut(s) 78, 2097, 3017, 3636
MvnI CGCG 1 cut(s) 3573
MwoI GCNNNNNNNGC 7 cut(s) 292, 695, 973, 1093, 2630, 3317, 3422
NarI GGCGCC 1 cut(s) 3815
NcoI CCATGG 1 cut(s) 475
NmeAIII GCCGAG 1 cut(s) 1843
NmuCI GTSAC 7 cut(s) 370, 1201, 1478, 1846, 2273, 2606, 3728
NsiI ATGCAT 3 cut(s) 62, 1195, 3313
NspI RCATGY 5 cut(s) 728, 976, 1438, 2417, 3092
NspV TTCGAA 1 cut(s) 2196
OliI CACNNNNGTG 2 cut(s) 1805, 2384
PaeI GCATGC 2 cut(s) 1438, 3092
PagI TCATGA 4 cut(s) 654, 1119, 1132, 3556
PaqCI CACCTGC 1 cut(s) 592
PceI AGGCCT 2 cut(s) 967, 3512
PctI GAATGC 4 cut(s) 1195, 1819, 2076, 2525
PdmI GAANNNNTTC 1 cut(s) 2525
PfeI GAWTC 4 cut(s) 770, 901, 3012, 3568
PflMI CCANNNNNTGG 2 cut(s) 282, 3301
PkrI GCNGC 5 cut(s) 49, 460, 553, 556, 2815
PleI GAGTC 2 cut(s) 513, 1745
PluTI GGCGCC 1 cut(s) 3818
PpsI GAGTC 2 cut(s) 513, 1745
PpuMI RGGWCCY 4 cut(s) 492, 998, 1315, 3272
Psp124BI GAGCTC 2 cut(s) 1089, 1581
Psp1406I AACGTT 7 cut(s) 894, 1025, 2054, 2233, 2925, 3068, 3298
Psp5II RGGWCCY 4 cut(s) 492, 998, 1315, 3272
Psp6I CCWGG 4 cut(s) 76, 2095, 3015, 3634
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 4 cut(s) 76, 2095, 3015, 3634
PspPPI RGGWCCY 4 cut(s) 492, 998, 1315, 3272
PsrI GAACNNNNNNTAC 4 cut(s) 1550, 1582, 3631, 3663
PsuI RGATCY 3 cut(s) 563, 2353, 2768
RsaI GTAC 5 cut(s) 353, 2101, 2785, 2825, 3801
RsaNI GTAC 5 cut(s) 352, 2100, 2784, 2824, 3800
RseI CAYNNNNRTG 3 cut(s) 1137, 1805, 2384
SacI GAGCTC 2 cut(s) 1089, 1581
SatI GCNGC 5 cut(s) 48, 459, 552, 555, 2814
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 2 cut(s) 513, 1745
ScrFI CCNGG 4 cut(s) 78, 2097, 3017, 3636
SduI GDGCHC 9 cut(s) 212, 619, 1089, 1581, 1785, 1836, 3526, 3716, 3786
SfcI CTRYAG 4 cut(s) 33, 2062, 2425, 3267
SfoI GGCGCC 1 cut(s) 3816
SfuI TTCGAA 1 cut(s) 2196
SmiMI CAYNNNNRTG 3 cut(s) 1137, 1805, 2384
SmlI CTYRAG 9 cut(s) 176, 930, 1088, 1937, 2206, 3107, 3257, 3491, 3755
SmoI CTYRAG 9 cut(s) 176, 930, 1088, 1937, 2206, 3107, 3257, 3491, 3755
SpeI ACTAGT 2 cut(s) 1040, 2950
SphI GCATGC 2 cut(s) 1438, 3092
SseBI AGGCCT 2 cut(s) 967, 3512
SsiI CCGC 3 cut(s) 525, 856, 3573
SspDI GGCGCC 1 cut(s) 3814
SstI GAGCTC 2 cut(s) 1089, 1581
StuI AGGCCT 2 cut(s) 967, 3512
StyD4I CCNGG 4 cut(s) 76, 2095, 3015, 3634
TaaI ACNGT 8 cut(s) 24, 376, 633, 694, 1604, 1804, 1846, 3268
TaqI TCGA 5 cut(s) 186, 1046, 1858, 1974, 2196
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 4 cut(s) 770, 901, 3012, 3568
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 7 cut(s) 370, 1201, 1478, 1846, 2273, 2606, 3728
TseI GCWGC 5 cut(s) 47, 458, 551, 554, 2813
Tsp45I GTSAC 7 cut(s) 370, 1201, 1478, 1846, 2273, 2606, 3728
TspGWI ACGGA 2 cut(s) 746, 2387
TspRI CASTG 1 cut(s) 379
Van91I CCANNNNNTGG 2 cut(s) 282, 3301
Vha464I CTTAAG 3 cut(s) 2206, 3107, 3755
VneI GTGCAC 1 cut(s) 615
XagI CCTNNNNNAGG 2 cut(s) 1532, 3809
XapI RAATTY 4 cut(s) 421, 1402, 2762, 3498
XbaI TCTAGA 2 cut(s) 3617, 3650
XceI RCATGY 5 cut(s) 728, 976, 1438, 2417, 3092
XcmI CCANNNNNNNNNTGG 1 cut(s) 2977
XmaJI CCTAGG 2 cut(s) 815, 2852
XmiI GTMKAC 1 cut(s) 2947
XmnI GAANNNNTTC 1 cut(s) 2525
ZrmI AGTACT 1 cut(s) 353
Zsp2I ATGCAT 3 cut(s) 62, 1195, 3313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.