transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 223 |
| AciI | CCGC | 2 cut(s) | 221, 338 |
| AclWI | GGATC | 1 cut(s) | 368 |
| AcoI | YGGCCR | 1 cut(s) | 528 |
| AcsI | RAATTY | 3 cut(s) | 97, 103, 260 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 23 |
| AgsI | TTSAA | 5 cut(s) | 209, 268, 301, 422, 450 |
| AjnI | CCWGG | 1 cut(s) | 315 |
| AluBI | AGCT | 3 cut(s) | 274, 446, 499 |
| AluI | AGCT | 3 cut(s) | 274, 446, 499 |
| Alw21I | GWGCWC | 1 cut(s) | 64 |
| Alw44I | GTGCAC | 1 cut(s) | 60 |
| AlwI | GGATC | 1 cut(s) | 368 |
| AoxI | GGCC | 1 cut(s) | 528 |
| ApaLI | GTGCAC | 1 cut(s) | 60 |
| ApeKI | GCWGC | 2 cut(s) | 42, 45 |
| ApoI | RAATTY | 3 cut(s) | 97, 103, 260 |
| AseI | ATTAAT | 1 cut(s) | 453 |
| AspS9I | GGNCC | 1 cut(s) | 313 |
| AsuII | TTCGAA | 1 cut(s) | 101 |
| AvaII | GGWCC | 1 cut(s) | 313 |
| BaeGI | GKGCMC | 1 cut(s) | 64 |
| Bbv12I | GWGCWC | 1 cut(s) | 64 |
| BbvI | GCAGC | 2 cut(s) | 29, 57 |
| BccI | CCATC | 2 cut(s) | 79, 503 |
| BciT130I | CCWGG | 1 cut(s) | 317 |
| BfaI | CTAG | 5 cut(s) | 57, 111, 141, 188, 434 |
| BfmI | CTRYAG | 1 cut(s) | 43 |
| BisI | GCNGC | 2 cut(s) | 43, 46 |
| BlsI | GCNGC | 2 cut(s) | 44, 47 |
| Bme1390I | CCNGG | 1 cut(s) | 317 |
| Bme18I | GGWCC | 1 cut(s) | 313 |
| BmgT120I | GGNCC | 1 cut(s) | 313 |
| BmrFI | CCNGG | 1 cut(s) | 317 |
| BmsI | GCATC | 1 cut(s) | 220 |
| Bpu14I | TTCGAA | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 1 cut(s) | 84 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 23 |
| BseBI | CCWGG | 1 cut(s) | 317 |
| BseDI | CCNNGG | 1 cut(s) | 84 |
| BseGI | GGATG | 1 cut(s) | 71 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 23 |
| BseSI | GKGCMC | 1 cut(s) | 64 |
| BseXI | GCAGC | 2 cut(s) | 29, 57 |
| BshFI | GGCC | 1 cut(s) | 530 |
| BsiHKAI | GWGCWC | 1 cut(s) | 64 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 23 |
| BsnI | GGCC | 1 cut(s) | 530 |
| Bsp119I | TTCGAA | 1 cut(s) | 101 |
| Bsp1286I | GDGCHC | 1 cut(s) | 64 |
| Bsp143I | GATC | 2 cut(s) | 373, 532 |
| BspACI | CCGC | 2 cut(s) | 221, 338 |
| BspANI | GGCC | 1 cut(s) | 530 |
| BspMAI | CTGCAG | 1 cut(s) | 47 |
| BspPI | GGATC | 1 cut(s) | 368 |
| BspT104I | TTCGAA | 1 cut(s) | 101 |
| BsrBI | CCGCTC | 1 cut(s) | 223 |
| BssECI | CCNNGG | 1 cut(s) | 84 |
| BssMI | GATC | 2 cut(s) | 373, 532 |
| BssT1I | CCWWGG | 1 cut(s) | 84 |
| Bst2UI | CCWGG | 1 cut(s) | 317 |
| Bst6I | CTCTTC | 2 cut(s) | 162, 284 |
| BstBI | TTCGAA | 1 cut(s) | 101 |
| BstDEI | CTNAG | 3 cut(s) | 249, 439, 490 |
| BstF5I | GGATG | 1 cut(s) | 71 |
| BstKTI | GATC | 2 cut(s) | 376, 535 |
| BstMBI | GATC | 2 cut(s) | 373, 532 |
| BstNI | CCWGG | 1 cut(s) | 317 |
| BstNSI | RCATGY | 1 cut(s) | 428 |
| BstSCI | CCNGG | 1 cut(s) | 315 |
| BstSFI | CTRYAG | 1 cut(s) | 43 |
| BstSLI | GKGCMC | 1 cut(s) | 64 |
| BstV1I | GCAGC | 2 cut(s) | 29, 57 |
| BstX2I | RGATCY | 1 cut(s) | 373 |
| BstYI | RGATCY | 1 cut(s) | 373 |
| BsuRI | GGCC | 1 cut(s) | 530 |
| BtsCI | GGATG | 1 cut(s) | 71 |
| Cfr13I | GGNCC | 1 cut(s) | 313 |
| CviAII | CATG | 2 cut(s) | 425, 460 |
| CviJI | RGCY | 6 cut(s) | 16, 48, 274, 446, 499, 530 |
| CviKI_1 | RGCY | 6 cut(s) | 16, 48, 274, 446, 499, 530 |
| DdeI | CTNAG | 3 cut(s) | 249, 439, 490 |
| DpnI | GATC | 2 cut(s) | 375, 534 |
| DpnII | GATC | 2 cut(s) | 373, 532 |
| EaeI | YGGCCR | 1 cut(s) | 528 |
| Eam1104I | CTCTTC | 2 cut(s) | 162, 284 |
| EarI | CTCTTC | 2 cut(s) | 162, 284 |
| Eco130I | CCWWGG | 1 cut(s) | 84 |
| Eco47I | GGWCC | 1 cut(s) | 313 |
| EcoRII | CCWGG | 1 cut(s) | 315 |
| EcoT14I | CCWWGG | 1 cut(s) | 84 |
| ErhI | CCWWGG | 1 cut(s) | 84 |
| FaeI | CATG | 2 cut(s) | 428, 463 |
| FaiI | YATR | 6 cut(s) | 255, 426, 431, 461, 477, 485 |
| FatI | CATG | 2 cut(s) | 424, 459 |
| FauI | CCCGC | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 2 cut(s) | 43, 46 |
| FokI | GGATG | 1 cut(s) | 58 |
| Fsp4HI | GCNGC | 2 cut(s) | 43, 46 |
| FspBI | CTAG | 5 cut(s) | 57, 111, 141, 188, 434 |
| GluI | GCNGC | 2 cut(s) | 43, 46 |
| HaeIII | GGCC | 1 cut(s) | 530 |
| Hin1II | CATG | 2 cut(s) | 428, 463 |
| HindIII | AAGCTT | 1 cut(s) | 444 |
| Hpy166II | GTNNAC | 1 cut(s) | 62 |
| Hpy188I | TCNGA | 1 cut(s) | 378 |
| Hpy188III | TCNNGA | 2 cut(s) | 188, 265 |
| Hpy8I | GTNNAC | 1 cut(s) | 62 |
| HpyAV | CCTTC | 1 cut(s) | 172 |
| HpyCH4V | TGCA | 5 cut(s) | 45, 62, 233, 279, 369 |
| HpyF3I | CTNAG | 3 cut(s) | 249, 439, 490 |
| Hsp92II | CATG | 2 cut(s) | 428, 463 |
| Kzo9I | GATC | 2 cut(s) | 373, 532 |
| LmnI | GCTCC | 1 cut(s) | 228 |
| LpnPI | CCDG | 3 cut(s) | 130, 302, 329 |
| Lsp1109I | GCAGC | 2 cut(s) | 29, 57 |
| LweI | GCATC | 1 cut(s) | 220 |
| MaeI | CTAG | 5 cut(s) | 57, 111, 141, 188, 434 |
| MalI | GATC | 2 cut(s) | 375, 534 |
| MbiI | CCGCTC | 1 cut(s) | 223 |
| MboI | GATC | 2 cut(s) | 373, 532 |
| MboII | GAAGA | 2 cut(s) | 179, 301 |
| MfeI | CAATTG | 1 cut(s) | 524 |
| MflI | RGATCY | 1 cut(s) | 373 |
| MhlI | GDGCHC | 1 cut(s) | 64 |
| MnlI | CCTC | 3 cut(s) | 285, 301, 490 |
| MseI | TTAA | 3 cut(s) | 213, 453, 501 |
| MslI | CAYNNNNRTG | 1 cut(s) | 364 |
| MspR9I | CCNGG | 1 cut(s) | 317 |
| MunI | CAATTG | 1 cut(s) | 524 |
| MvaI | CCWGG | 1 cut(s) | 317 |
| NdeII | GATC | 2 cut(s) | 373, 532 |
| NlaIII | CATG | 2 cut(s) | 428, 463 |
| NspI | RCATGY | 1 cut(s) | 428 |
| NspV | TTCGAA | 1 cut(s) | 101 |
| PkrI | GCNGC | 2 cut(s) | 44, 47 |
| PshBI | ATTAAT | 1 cut(s) | 453 |
| Psp6I | CCWGG | 1 cut(s) | 315 |
| PspGI | CCWGG | 1 cut(s) | 315 |
| PspPI | GGNCC | 1 cut(s) | 313 |
| PstI | CTGCAG | 1 cut(s) | 47 |
| PsuI | RGATCY | 1 cut(s) | 373 |
| RseI | CAYNNNNRTG | 1 cut(s) | 364 |
| SaqAI | TTAA | 3 cut(s) | 213, 453, 501 |
| SatI | GCNGC | 2 cut(s) | 43, 46 |
| Sau3AI | GATC | 2 cut(s) | 373, 532 |
| Sau96I | GGNCC | 1 cut(s) | 313 |
| ScrFI | CCNGG | 1 cut(s) | 317 |
| SduI | GDGCHC | 1 cut(s) | 64 |
| SfaNI | GCATC | 1 cut(s) | 220 |
| SfcI | CTRYAG | 1 cut(s) | 43 |
| SfuI | TTCGAA | 1 cut(s) | 101 |
| SinI | GGWCC | 1 cut(s) | 313 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 364 |
| SsiI | CCGC | 2 cut(s) | 221, 338 |
| SspMI | CTAG | 5 cut(s) | 57, 111, 141, 188, 434 |
| StyD4I | CCNGG | 1 cut(s) | 315 |
| StyI | CCWWGG | 1 cut(s) | 84 |
| TaqI | TCGA | 1 cut(s) | 101 |
| Tru1I | TTAA | 3 cut(s) | 213, 453, 501 |
| Tru9I | TTAA | 3 cut(s) | 213, 453, 501 |
| TseI | GCWGC | 2 cut(s) | 42, 45 |
| TspDTI | ATGAA | 2 cut(s) | 17, 500 |
| VneI | GTGCAC | 1 cut(s) | 60 |
| VpaK11BI | GGWCC | 1 cut(s) | 313 |
| VspI | ATTAAT | 1 cut(s) | 453 |
| XapI | RAATTY | 3 cut(s) | 97, 103, 260 |
| XbaI | TCTAGA | 1 cut(s) | 187 |
| XceI | RCATGY | 1 cut(s) | 428 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 24 |
| XspI | CTAG | 5 cut(s) | 57, 111, 141, 188, 434 |