Integrase core domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 200 |
| Acc36I | ACCTGC | 1 cut(s) | 253 |
| AciI | CCGC | 1 cut(s) | 77 |
| AcoI | YGGCCR | 1 cut(s) | 210 |
| AcsI | RAATTY | 1 cut(s) | 382 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 49 |
| AgsI | TTSAA | 3 cut(s) | 23, 104, 206 |
| AluBI | AGCT | 2 cut(s) | 13, 448 |
| AluI | AGCT | 2 cut(s) | 13, 448 |
| AoxI | GGCC | 2 cut(s) | 210, 349 |
| ApeKI | GCWGC | 1 cut(s) | 13 |
| ApoI | RAATTY | 1 cut(s) | 382 |
| AseI | ATTAAT | 1 cut(s) | 135 |
| AsuHPI | GGTGA | 2 cut(s) | 188, 391 |
| BccI | CCATC | 2 cut(s) | 185, 337 |
| BceAI | ACGGC | 1 cut(s) | 336 |
| BfaI | CTAG | 2 cut(s) | 65, 347 |
| BfmI | CTRYAG | 1 cut(s) | 285 |
| BfuAI | ACCTGC | 1 cut(s) | 253 |
| BisI | GCNGC | 1 cut(s) | 14 |
| BlsI | GCNGC | 1 cut(s) | 15 |
| BmsI | GCATC | 3 cut(s) | 58, 170, 367 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 310, 342 |
| BpuEI | CTTGAG | 1 cut(s) | 266 |
| BsaJI | CCNNGG | 4 cut(s) | 48, 72, 172, 234 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 49 |
| Bse3DI | GCAATG | 1 cut(s) | 332 |
| BseDI | CCNNGG | 4 cut(s) | 48, 72, 172, 234 |
| BseGI | GGATG | 1 cut(s) | 256 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 49 |
| BseMI | GCAATG | 1 cut(s) | 332 |
| BseRI | GAGGAG | 1 cut(s) | 23 |
| BsgI | GTGCAG | 1 cut(s) | 281 |
| Bsh1285I | CGRYCG | 1 cut(s) | 217 |
| BshFI | GGCC | 2 cut(s) | 212, 351 |
| BsiEI | CGRYCG | 1 cut(s) | 217 |
| BslFI | GGGAC | 1 cut(s) | 51 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 49 |
| BsmFI | GGGAC | 1 cut(s) | 51 |
| BsnI | GGCC | 2 cut(s) | 212, 351 |
| Bsp143I | GATC | 1 cut(s) | 214 |
| Bsp19I | CCATGG | 1 cut(s) | 48 |
| BspACI | CCGC | 1 cut(s) | 77 |
| BspANI | GGCC | 2 cut(s) | 212, 351 |
| BspHI | TCATGA | 1 cut(s) | 360 |
| BspMAI | CTGCAG | 1 cut(s) | 289 |
| BspMI | ACCTGC | 1 cut(s) | 253 |
| BsrDI | GCAATG | 1 cut(s) | 332 |
| BssECI | CCNNGG | 4 cut(s) | 48, 72, 172, 234 |
| BssMI | GATC | 1 cut(s) | 214 |
| BssT1I | CCWWGG | 3 cut(s) | 48, 172, 234 |
| Bst4CI | ACNGT | 1 cut(s) | 370 |
| BstDEI | CTNAG | 1 cut(s) | 301 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstF5I | GGATG | 1 cut(s) | 256 |
| BstKTI | GATC | 1 cut(s) | 217 |
| BstMBI | GATC | 1 cut(s) | 214 |
| BstMCI | CGRYCG | 1 cut(s) | 217 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 83, 343 |
| BstNSI | RCATGY | 1 cut(s) | 115 |
| BstSFI | CTRYAG | 1 cut(s) | 285 |
| BsuRI | GGCC | 2 cut(s) | 212, 351 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| BtsCI | GGATG | 1 cut(s) | 256 |
| BveI | ACCTGC | 1 cut(s) | 253 |
| CciI | TCATGA | 1 cut(s) | 360 |
| CviAII | CATG | 5 cut(s) | 49, 112, 142, 323, 361 |
| CviJI | RGCY | 5 cut(s) | 13, 212, 321, 351, 448 |
| CviKI_1 | RGCY | 5 cut(s) | 13, 212, 321, 351, 448 |
| DdeI | CTNAG | 1 cut(s) | 301 |
| DpnI | GATC | 1 cut(s) | 216 |
| DpnII | GATC | 1 cut(s) | 214 |
| EaeI | YGGCCR | 1 cut(s) | 210 |
| Eco130I | CCWWGG | 3 cut(s) | 48, 172, 234 |
| EcoT14I | CCWWGG | 3 cut(s) | 48, 172, 234 |
| EcoT22I | ATGCAT | 2 cut(s) | 113, 163 |
| ErhI | CCWWGG | 3 cut(s) | 48, 172, 234 |
| FaeI | CATG | 5 cut(s) | 52, 115, 145, 326, 364 |
| FaqI | GGGAC | 1 cut(s) | 51 |
| FatI | CATG | 5 cut(s) | 48, 111, 141, 322, 360 |
| FauI | CCCGC | 1 cut(s) | 70 |
| Fnu4HI | GCNGC | 1 cut(s) | 14 |
| FokI | GGATG | 1 cut(s) | 263 |
| Fsp4HI | GCNGC | 1 cut(s) | 14 |
| FspBI | CTAG | 2 cut(s) | 65, 347 |
| GluI | GCNGC | 1 cut(s) | 14 |
| HaeIII | GGCC | 2 cut(s) | 212, 351 |
| Hin1II | CATG | 5 cut(s) | 52, 115, 145, 326, 364 |
| HinfI | GANTC | 3 cut(s) | 39, 240, 314 |
| HphI | GGTGA | 2 cut(s) | 188, 391 |
| Hpy166II | GTNNAC | 1 cut(s) | 94 |
| Hpy188III | TCNNGA | 1 cut(s) | 361 |
| Hpy8I | GTNNAC | 1 cut(s) | 94 |
| HpyAV | CCTTC | 1 cut(s) | 53 |
| HpyCH4III | ACNGT | 1 cut(s) | 370 |
| HpyCH4IV | ACGT | 1 cut(s) | 55 |
| HpyCH4V | TGCA | 6 cut(s) | 86, 111, 161, 262, 287, 380 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 83, 343 |
| HpyF3I | CTNAG | 1 cut(s) | 301 |
| HpySE526I | ACGT | 1 cut(s) | 55 |
| Hsp92II | CATG | 5 cut(s) | 52, 115, 145, 326, 364 |
| Kzo9I | GATC | 1 cut(s) | 214 |
| LmnI | GCTCC | 2 cut(s) | 10, 331 |
| LpnPI | CCDG | 2 cut(s) | 248, 297 |
| LweI | GCATC | 3 cut(s) | 58, 170, 367 |
| MaeI | CTAG | 2 cut(s) | 65, 347 |
| MaeII | ACGT | 1 cut(s) | 55 |
| MalI | GATC | 1 cut(s) | 216 |
| MboI | GATC | 1 cut(s) | 214 |
| MfeI | CAATTG | 1 cut(s) | 206 |
| MluCI | AATT | 3 cut(s) | 201, 206, 382 |
| MlyI | GAGTC | 2 cut(s) | 33, 249 |
| MnlI | CCTC | 3 cut(s) | 82, 241, 304 |
| Mph1103I | ATGCAT | 2 cut(s) | 113, 163 |
| MseI | TTAA | 4 cut(s) | 135, 182, 434, 444 |
| MunI | CAATTG | 1 cut(s) | 206 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 83, 343 |
| NcoI | CCATGG | 1 cut(s) | 48 |
| NdeII | GATC | 1 cut(s) | 214 |
| NlaIII | CATG | 5 cut(s) | 52, 115, 145, 326, 364 |
| NmeAIII | GCCGAG | 1 cut(s) | 53 |
| NsiI | ATGCAT | 2 cut(s) | 113, 163 |
| NspI | RCATGY | 1 cut(s) | 115 |
| PagI | TCATGA | 1 cut(s) | 360 |
| PfeI | GAWTC | 1 cut(s) | 314 |
| PkrI | GCNGC | 1 cut(s) | 15 |
| Ple19I | CGATCG | 1 cut(s) | 217 |
| PleI | GAGTC | 2 cut(s) | 33, 248 |
| PpsI | GAGTC | 2 cut(s) | 33, 248 |
| PshBI | ATTAAT | 1 cut(s) | 135 |
| PsiI | TTATAA | 1 cut(s) | 200 |
| PstI | CTGCAG | 1 cut(s) | 289 |
| PvuI | CGATCG | 1 cut(s) | 217 |
| SaqAI | TTAA | 4 cut(s) | 135, 182, 434, 444 |
| SatI | GCNGC | 1 cut(s) | 14 |
| Sau3AI | GATC | 1 cut(s) | 214 |
| SchI | GAGTC | 2 cut(s) | 33, 249 |
| SetI | ASST | 6 cut(s) | 15, 58, 127, 174, 267, 450 |
| SfaNI | GCATC | 3 cut(s) | 58, 170, 367 |
| SfcI | CTRYAG | 1 cut(s) | 285 |
| SmlI | CTYRAG | 1 cut(s) | 245 |
| SmoI | CTYRAG | 1 cut(s) | 245 |
| Sse9I | AATT | 3 cut(s) | 201, 206, 382 |
| SsiI | CCGC | 1 cut(s) | 77 |
| SspI | AATATT | 1 cut(s) | 26 |
| SspMI | CTAG | 2 cut(s) | 65, 347 |
| StyI | CCWWGG | 3 cut(s) | 48, 172, 234 |
| TaaI | ACNGT | 1 cut(s) | 370 |
| TaiI | ACGT | 1 cut(s) | 58 |
| TaqI | TCGA | 1 cut(s) | 317 |
| TasI | AATT | 3 cut(s) | 201, 206, 382 |
| TfiI | GAWTC | 1 cut(s) | 314 |
| Tru1I | TTAA | 4 cut(s) | 135, 182, 434, 444 |
| Tru9I | TTAA | 4 cut(s) | 135, 182, 434, 444 |
| TseI | GCWGC | 1 cut(s) | 13 |
| TspDTI | ATGAA | 4 cut(s) | 17, 182, 349, 377 |
| TspGWI | ACGGA | 1 cut(s) | 345 |
| VspI | ATTAAT | 1 cut(s) | 135 |
| XapI | RAATTY | 1 cut(s) | 382 |
| XceI | RCATGY | 1 cut(s) | 115 |
| XspI | CTAG | 2 cut(s) | 65, 347 |
| Zsp2I | ATGCAT | 2 cut(s) | 113, 163 |