transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 465 |
| Acc36I | ACCTGC | 1 cut(s) | 718 |
| AccBSI | CCGCTC | 1 cut(s) | 723 |
| AccI | GTMKAC | 1 cut(s) | 1129 |
| AccII | CGCG | 2 cut(s) | 1126, 1317 |
| AciI | CCGC | 2 cut(s) | 723, 1315 |
| AclI | AACGTT | 1 cut(s) | 162 |
| AclWI | GGATC | 2 cut(s) | 89, 1313 |
| AcoI | YGGCCR | 2 cut(s) | 443, 537 |
| AcsI | RAATTY | 4 cut(s) | 344, 572, 674, 759 |
| AfaI | GTAC | 5 cut(s) | 216, 547, 614, 1215, 1308 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 174, 1229 |
| AflIII | ACRYGT | 2 cut(s) | 376, 1236 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1106 |
| AjnI | CCWGG | 2 cut(s) | 608, 1141 |
| AluBI | AGCT | 8 cut(s) | 132, 236, 263, 499, 662, 910, 997, 1312 |
| AluI | AGCT | 8 cut(s) | 132, 236, 263, 499, 662, 910, 997, 1312 |
| Alw21I | GWGCWC | 1 cut(s) | 238 |
| Alw26I | GTCTC | 1 cut(s) | 867 |
| AlwI | GGATC | 2 cut(s) | 89, 1313 |
| AoxI | GGCC | 3 cut(s) | 443, 537, 1169 |
| ApeKI | GCWGC | 2 cut(s) | 557, 659 |
| ApoI | RAATTY | 4 cut(s) | 344, 572, 674, 759 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1238 |
| AspLEI | GCGC | 1 cut(s) | 466 |
| AspS9I | GGNCC | 2 cut(s) | 779, 1169 |
| AsuC2I | CCSGG | 1 cut(s) | 787 |
| AsuHPI | GGTGA | 3 cut(s) | 62, 265, 1300 |
| AvaII | GGWCC | 1 cut(s) | 779 |
| BalI | TGGCCA | 2 cut(s) | 445, 539 |
| BanII | GRGCYC | 1 cut(s) | 238 |
| BbsI | GAAGAC | 3 cut(s) | 263, 413, 776 |
| Bbv12I | GWGCWC | 1 cut(s) | 238 |
| BbvI | GCAGC | 2 cut(s) | 544, 671 |
| BccI | CCATC | 1 cut(s) | 620 |
| BceAI | ACGGC | 1 cut(s) | 852 |
| BciT130I | CCWGG | 2 cut(s) | 610, 1143 |
| BciVI | GTATCC | 1 cut(s) | 748 |
| BcnI | CCSGG | 1 cut(s) | 787 |
| BcoDI | GTCTC | 1 cut(s) | 867 |
| BfaI | CTAG | 2 cut(s) | 998, 1158 |
| BfmI | CTRYAG | 2 cut(s) | 226, 1281 |
| BfuAI | ACCTGC | 1 cut(s) | 718 |
| BfuI | GTATCC | 1 cut(s) | 748 |
| BglII | AGATCT | 1 cut(s) | 92 |
| BisI | GCNGC | 2 cut(s) | 558, 660 |
| BlpI | GCTNAGC | 1 cut(s) | 264 |
| BlsI | GCNGC | 2 cut(s) | 559, 661 |
| Bme1390I | CCNGG | 3 cut(s) | 610, 787, 1143 |
| Bme18I | GGWCC | 1 cut(s) | 779 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1106 |
| BmgT120I | GGNCC | 2 cut(s) | 779, 1169 |
| BmiI | GGNNCC | 1 cut(s) | 634 |
| BmrFI | CCNGG | 3 cut(s) | 610, 787, 1143 |
| BmsI | GCATC | 3 cut(s) | 451, 544, 952 |
| BpiI | GAAGAC | 3 cut(s) | 263, 413, 776 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 95, 127 |
| Bpu10I | CCTNAGC | 2 cut(s) | 74, 668 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 264 |
| BpuMI | CCSGG | 1 cut(s) | 787 |
| BsaJI | CCNNGG | 3 cut(s) | 173, 608, 1141 |
| BsaWI | WCCGGW | 1 cut(s) | 901 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 174, 1229 |
| Bse118I | RCCGGY | 1 cut(s) | 965 |
| Bse1I | ACTGG | 1 cut(s) | 1322 |
| Bse3DI | GCAATG | 2 cut(s) | 113, 420 |
| BseBI | CCWGG | 2 cut(s) | 610, 1143 |
| BseDI | CCNNGG | 3 cut(s) | 173, 608, 1141 |
| BseGI | GGATG | 4 cut(s) | 112, 286, 709, 864 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 174, 1229 |
| BseMI | GCAATG | 2 cut(s) | 113, 420 |
| BseMII | CTCAG | 4 cut(s) | 42, 65, 682, 728 |
| BseNI | ACTGG | 1 cut(s) | 1322 |
| BseXI | GCAGC | 2 cut(s) | 544, 671 |
| BsgI | GTGCAG | 1 cut(s) | 1224 |
| Bsh1236I | CGCG | 2 cut(s) | 1126, 1317 |
| BshFI | GGCC | 3 cut(s) | 445, 539, 1171 |
| BsiHKAI | GWGCWC | 1 cut(s) | 238 |
| BsiSI | CCGG | 3 cut(s) | 787, 902, 966 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 174, 1229 |
| BsmAI | GTCTC | 1 cut(s) | 867 |
| BsnI | GGCC | 3 cut(s) | 445, 539, 1171 |
| Bsp1286I | GDGCHC | 1 cut(s) | 238 |
| Bsp143I | GATC | 5 cut(s) | 30, 67, 81, 92, 1318 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 264 |
| BspACI | CCGC | 2 cut(s) | 723, 1315 |
| BspANI | GGCC | 3 cut(s) | 445, 539, 1171 |
| BspCNI | CTCAG | 4 cut(s) | 43, 66, 681, 727 |
| BspFNI | CGCG | 2 cut(s) | 1126, 1317 |
| BspHI | TCATGA | 1 cut(s) | 1063 |
| BspLI | GGNNCC | 1 cut(s) | 634 |
| BspMAI | CTGCAG | 1 cut(s) | 1285 |
| BspMI | ACCTGC | 1 cut(s) | 718 |
| BspPI | GGATC | 2 cut(s) | 89, 1313 |
| BsrBI | CCGCTC | 1 cut(s) | 723 |
| BsrDI | GCAATG | 2 cut(s) | 113, 420 |
| BsrFI | RCCGGY | 1 cut(s) | 965 |
| BsrI | ACTGG | 1 cut(s) | 1322 |
| BssAI | RCCGGY | 1 cut(s) | 965 |
| BssECI | CCNNGG | 3 cut(s) | 173, 608, 1141 |
| BssMI | GATC | 5 cut(s) | 30, 67, 81, 92, 1318 |
| BssT1I | CCWWGG | 1 cut(s) | 173 |
| Bst2UI | CCWGG | 2 cut(s) | 610, 1143 |
| Bst4CI | ACNGT | 5 cut(s) | 230, 505, 588, 775, 1269 |
| Bst6I | CTCTTC | 1 cut(s) | 205 |
| BstC8I | GCNNGC | 2 cut(s) | 725, 1281 |
| BstDEI | CTNAG | 6 cut(s) | 51, 74, 264, 668, 714, 808 |
| BstF5I | GGATG | 4 cut(s) | 112, 286, 709, 864 |
| BstFNI | CGCG | 2 cut(s) | 1126, 1317 |
| BstHHI | GCGC | 1 cut(s) | 466 |
| BstKTI | GATC | 5 cut(s) | 33, 70, 84, 95, 1321 |
| BstMAI | GTCTC | 1 cut(s) | 867 |
| BstMBI | GATC | 5 cut(s) | 30, 67, 81, 92, 1318 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 824, 929, 1202, 1333 |
| BstNI | CCWGG | 2 cut(s) | 610, 1143 |
| BstNSI | RCATGY | 1 cut(s) | 380 |
| BstSCI | CCNGG | 3 cut(s) | 608, 785, 1141 |
| BstSFI | CTRYAG | 2 cut(s) | 226, 1281 |
| BstUI | CGCG | 2 cut(s) | 1126, 1317 |
| BstV1I | GCAGC | 2 cut(s) | 544, 671 |
| BstV2I | GAAGAC | 3 cut(s) | 263, 413, 776 |
| BstX2I | RGATCY | 1 cut(s) | 92 |
| BstYI | RGATCY | 1 cut(s) | 92 |
| BsuI | GTATCC | 1 cut(s) | 748 |
| BsuRI | GGCC | 3 cut(s) | 445, 539, 1171 |
| BtsCI | GGATG | 4 cut(s) | 112, 286, 709, 864 |
| BtsI | GCAGTG | 1 cut(s) | 540 |
| BtsIMutI | CAGTG | 5 cut(s) | 48, 540, 584, 628, 1329 |
| BveI | ACCTGC | 1 cut(s) | 718 |
| Cac8I | GCNNGC | 2 cut(s) | 725, 1281 |
| CciI | TCATGA | 1 cut(s) | 1063 |
| CfoI | GCGC | 1 cut(s) | 466 |
| Cfr10I | RCCGGY | 1 cut(s) | 965 |
| Cfr13I | GGNCC | 2 cut(s) | 779, 1169 |
| CseI | GACGC | 1 cut(s) | 1115 |
| Csp6I | GTAC | 5 cut(s) | 215, 546, 613, 1214, 1307 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 507, 542 |
| CviAII | CATG | 5 cut(s) | 377, 467, 483, 1064, 1199 |
| CviQI | GTAC | 5 cut(s) | 215, 546, 613, 1214, 1307 |
| DdeI | CTNAG | 6 cut(s) | 51, 74, 264, 668, 714, 808 |
| DpnI | GATC | 5 cut(s) | 32, 69, 83, 94, 1320 |
| DpnII | GATC | 5 cut(s) | 30, 67, 81, 92, 1318 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1106 |
| EaeI | YGGCCR | 2 cut(s) | 443, 537 |
| Eam1104I | CTCTTC | 1 cut(s) | 205 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1106 |
| EarI | CTCTTC | 1 cut(s) | 205 |
| Ecl136II | GAGCTC | 1 cut(s) | 236 |
| Eco130I | CCWWGG | 1 cut(s) | 173 |
| Eco24I | GRGCYC | 1 cut(s) | 238 |
| Eco47I | GGWCC | 1 cut(s) | 779 |
| Eco53kI | GAGCTC | 1 cut(s) | 236 |
| EcoICRI | GAGCTC | 1 cut(s) | 236 |
| EcoRII | CCWGG | 2 cut(s) | 608, 1141 |
| EcoT14I | CCWWGG | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 1 cut(s) | 238 |
| ErhI | CCWWGG | 1 cut(s) | 173 |
| FaeI | CATG | 5 cut(s) | 380, 470, 486, 1067, 1202 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1072, 1104, 1098, 1130 |
| FatI | CATG | 5 cut(s) | 376, 466, 482, 1063, 1198 |
| FauI | CCCGC | 1 cut(s) | 716 |
| FblI | GTMKAC | 1 cut(s) | 1129 |
| Fnu4HI | GCNGC | 2 cut(s) | 558, 660 |
| FokI | GGATG | 4 cut(s) | 119, 293, 696, 871 |
| FriOI | GRGCYC | 1 cut(s) | 238 |
| Fsp4HI | GCNGC | 2 cut(s) | 558, 660 |
| FspAI | RTGCGCAY | 1 cut(s) | 465 |
| FspBI | CTAG | 2 cut(s) | 998, 1158 |
| FspI | TGCGCA | 1 cut(s) | 465 |
| GlaI | GCGC | 1 cut(s) | 465 |
| GluI | GCNGC | 2 cut(s) | 558, 660 |
| HaeIII | GGCC | 3 cut(s) | 445, 539, 1171 |
| HapII | CCGG | 3 cut(s) | 787, 902, 966 |
| HgaI | GACGC | 1 cut(s) | 1115 |
| HhaI | GCGC | 1 cut(s) | 466 |
| Hin1II | CATG | 5 cut(s) | 380, 470, 486, 1067, 1202 |
| Hin6I | GCGC | 1 cut(s) | 464 |
| HinP1I | GCGC | 1 cut(s) | 464 |
| HincII | GTYRAC | 2 cut(s) | 193, 803 |
| HindII | GTYRAC | 2 cut(s) | 193, 803 |
| HinfI | GANTC | 5 cut(s) | 110, 799, 1006, 1025, 1035 |
| HpaI | GTTAAC | 1 cut(s) | 193 |
| HpaII | CCGG | 3 cut(s) | 787, 902, 966 |
| HphI | GGTGA | 3 cut(s) | 62, 265, 1300 |
| Hpy166II | GTNNAC | 5 cut(s) | 193, 803, 1130, 1148, 1249 |
| Hpy188I | TCNGA | 3 cut(s) | 169, 717, 1224 |
| Hpy188III | TCNNGA | 7 cut(s) | 14, 207, 308, 335, 425, 670, 1064 |
| Hpy8I | GTNNAC | 5 cut(s) | 193, 803, 1130, 1148, 1249 |
| HpyAV | CCTTC | 2 cut(s) | 318, 412 |
| HpyCH4III | ACNGT | 5 cut(s) | 230, 505, 588, 775, 1269 |
| HpyCH4IV | ACGT | 2 cut(s) | 162, 1238 |
| HpyCH4V | TGCA | 5 cut(s) | 182, 413, 659, 1205, 1283 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 824, 929, 1202, 1333 |
| HpyF3I | CTNAG | 6 cut(s) | 51, 74, 264, 668, 714, 808 |
| HpySE526I | ACGT | 2 cut(s) | 162, 1238 |
| Hsp92II | CATG | 5 cut(s) | 380, 470, 486, 1067, 1202 |
| HspAI | GCGC | 1 cut(s) | 464 |
| KspAI | GTTAAC | 1 cut(s) | 193 |
| Kzo9I | GATC | 5 cut(s) | 30, 67, 81, 92, 1318 |
| LmnI | GCTCC | 3 cut(s) | 907, 1317, 1333 |
| Lsp1109I | GCAGC | 2 cut(s) | 544, 671 |
| LweI | GCATC | 3 cut(s) | 451, 544, 952 |
| MaeI | CTAG | 2 cut(s) | 998, 1158 |
| MaeII | ACGT | 2 cut(s) | 162, 1238 |
| MaeIII | GTNAC | 5 cut(s) | 3, 368, 389, 644, 981 |
| MalI | GATC | 5 cut(s) | 32, 69, 83, 94, 1320 |
| MbiI | CCGCTC | 1 cut(s) | 723 |
| MboI | GATC | 5 cut(s) | 30, 67, 81, 92, 1318 |
| MboII | GAAGA | 8 cut(s) | 222, 268, 418, 430, 781, 890, 1237, 1313 |
| MflI | RGATCY | 1 cut(s) | 92 |
| MhlI | GDGCHC | 1 cut(s) | 238 |
| MlsI | TGGCCA | 2 cut(s) | 445, 539 |
| MluCI | AATT | 6 cut(s) | 344, 572, 674, 759, 1120, 1133 |
| MluNI | TGGCCA | 2 cut(s) | 445, 539 |
| MlyI | GAGTC | 3 cut(s) | 104, 808, 1034 |
| MmeI | TCCRAC | 2 cut(s) | 757, 1078 |
| Mox20I | TGGCCA | 2 cut(s) | 445, 539 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1238 |
| MscI | TGGCCA | 2 cut(s) | 445, 539 |
| MseI | TTAA | 5 cut(s) | 192, 936, 945, 1077, 1185 |
| MslI | CAYNNNNRTG | 1 cut(s) | 375 |
| Msp20I | TGGCCA | 2 cut(s) | 445, 539 |
| MspI | CCGG | 3 cut(s) | 787, 902, 966 |
| MspR9I | CCNGG | 3 cut(s) | 610, 787, 1143 |
| MvaI | CCWGG | 2 cut(s) | 610, 1143 |
| MvnI | CGCG | 2 cut(s) | 1126, 1317 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 824, 929, 1202, 1333 |
| NciI | CCSGG | 1 cut(s) | 787 |
| NdeII | GATC | 5 cut(s) | 30, 67, 81, 92, 1318 |
| NlaIII | CATG | 5 cut(s) | 380, 470, 486, 1067, 1202 |
| NlaIV | GGNNCC | 1 cut(s) | 634 |
| NmuCI | GTSAC | 2 cut(s) | 368, 389 |
| NsbI | TGCGCA | 1 cut(s) | 465 |
| NspI | RCATGY | 1 cut(s) | 380 |
| PagI | TCATGA | 1 cut(s) | 1063 |
| PciI | ACATGT | 1 cut(s) | 376 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1238 |
| PfeI | GAWTC | 2 cut(s) | 1006, 1035 |
| PkrI | GCNGC | 2 cut(s) | 559, 661 |
| PleI | GAGTC | 3 cut(s) | 104, 807, 1033 |
| PpsI | GAGTC | 3 cut(s) | 104, 807, 1033 |
| PscI | ACATGT | 1 cut(s) | 376 |
| Psp124BI | GAGCTC | 1 cut(s) | 238 |
| Psp1406I | AACGTT | 1 cut(s) | 162 |
| Psp6I | CCWGG | 2 cut(s) | 608, 1141 |
| PspGI | CCWGG | 2 cut(s) | 608, 1141 |
| PspN4I | GGNNCC | 1 cut(s) | 634 |
| PspPI | GGNCC | 2 cut(s) | 779, 1169 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1138, 1170 |
| PstI | CTGCAG | 1 cut(s) | 1285 |
| PsuI | RGATCY | 1 cut(s) | 92 |
| RsaI | GTAC | 5 cut(s) | 216, 547, 614, 1215, 1308 |
| RsaNI | GTAC | 5 cut(s) | 215, 546, 613, 1214, 1307 |
| RseI | CAYNNNNRTG | 1 cut(s) | 375 |
| SacI | GAGCTC | 1 cut(s) | 238 |
| SaqAI | TTAA | 5 cut(s) | 192, 936, 945, 1077, 1185 |
| SatI | GCNGC | 2 cut(s) | 558, 660 |
| Sau3AI | GATC | 5 cut(s) | 30, 67, 81, 92, 1318 |
| Sau96I | GGNCC | 2 cut(s) | 779, 1169 |
| SchI | GAGTC | 3 cut(s) | 104, 808, 1034 |
| ScrFI | CCNGG | 3 cut(s) | 610, 787, 1143 |
| SduI | GDGCHC | 1 cut(s) | 238 |
| SfaNI | GCATC | 3 cut(s) | 451, 544, 952 |
| SfcI | CTRYAG | 2 cut(s) | 226, 1281 |
| SinI | GGWCC | 1 cut(s) | 779 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 375 |
| Sse9I | AATT | 6 cut(s) | 344, 572, 674, 759, 1120, 1133 |
| SsiI | CCGC | 2 cut(s) | 723, 1315 |
| SspMI | CTAG | 2 cut(s) | 998, 1158 |
| SstI | GAGCTC | 1 cut(s) | 238 |
| StyD4I | CCNGG | 3 cut(s) | 608, 785, 1141 |
| StyI | CCWWGG | 1 cut(s) | 173 |
| TaaI | ACNGT | 5 cut(s) | 230, 505, 588, 775, 1269 |
| TaiI | ACGT | 2 cut(s) | 165, 1241 |
| TaqI | TCGA | 2 cut(s) | 871, 1209 |
| TasI | AATT | 6 cut(s) | 344, 572, 674, 759, 1120, 1133 |
| TatI | WGTACW | 1 cut(s) | 1306 |
| TfiI | GAWTC | 2 cut(s) | 1006, 1035 |
| Tru1I | TTAA | 5 cut(s) | 192, 936, 945, 1077, 1185 |
| Tru9I | TTAA | 5 cut(s) | 192, 936, 945, 1077, 1185 |
| TscAI | CASTG | 5 cut(s) | 55, 540, 591, 628, 1329 |
| TseFI | GTSAC | 2 cut(s) | 368, 389 |
| TseI | GCWGC | 2 cut(s) | 557, 659 |
| Tsp45I | GTSAC | 2 cut(s) | 368, 389 |
| TspDTI | ATGAA | 4 cut(s) | 431, 674, 962, 1052 |
| TspGWI | ACGGA | 1 cut(s) | 1266 |
| TspRI | CASTG | 5 cut(s) | 55, 540, 591, 628, 1329 |
| VpaK11BI | GGWCC | 1 cut(s) | 779 |
| XapI | RAATTY | 4 cut(s) | 344, 572, 674, 759 |
| XceI | RCATGY | 1 cut(s) | 380 |
| XmiI | GTMKAC | 1 cut(s) | 1129 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1238 |
| XspI | CTAG | 2 cut(s) | 998, 1158 |