Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 319 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 23 |
| Acc36I | ACCTGC | 1 cut(s) | 319 |
| AccIII | TCCGGA | 2 cut(s) | 295, 579 |
| AciI | CCGC | 1 cut(s) | 339 |
| AclWI | GGATC | 1 cut(s) | 356 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 441 |
| AgsI | TTSAA | 4 cut(s) | 34, 95, 557, 562 |
| AluBI | AGCT | 3 cut(s) | 328, 494, 553 |
| AluI | AGCT | 3 cut(s) | 328, 494, 553 |
| Alw21I | GWGCWC | 1 cut(s) | 171 |
| Alw44I | GTGCAC | 1 cut(s) | 167 |
| AlwI | GGATC | 1 cut(s) | 356 |
| Aor13HI | TCCGGA | 2 cut(s) | 295, 579 |
| ApaLI | GTGCAC | 1 cut(s) | 167 |
| AseI | ATTAAT | 1 cut(s) | 528 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 210 |
| AsuHPI | GGTGA | 1 cut(s) | 274 |
| BaeGI | GKGCMC | 1 cut(s) | 171 |
| Bbv12I | GWGCWC | 1 cut(s) | 171 |
| BccI | CCATC | 2 cut(s) | 72, 474 |
| BciVI | GTATCC | 1 cut(s) | 75 |
| BclI | TGATCA | 1 cut(s) | 388 |
| BfaI | CTAG | 1 cut(s) | 600 |
| BfuAI | ACCTGC | 1 cut(s) | 319 |
| BfuI | GTATCC | 1 cut(s) | 75 |
| BglII | AGATCT | 1 cut(s) | 187 |
| BmsI | GCATC | 2 cut(s) | 46, 577 |
| BsaAI | YACGTR | 1 cut(s) | 203 |
| BsaJI | CCNNGG | 1 cut(s) | 251 |
| BsaWI | WCCGGW | 2 cut(s) | 295, 579 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 441 |
| Bse1I | ACTGG | 1 cut(s) | 473 |
| BseAI | TCCGGA | 2 cut(s) | 295, 579 |
| BseDI | CCNNGG | 1 cut(s) | 251 |
| BseGI | GGATG | 3 cut(s) | 192, 304, 364 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 441 |
| BseMII | CTCAG | 2 cut(s) | 192, 329 |
| BseNI | ACTGG | 1 cut(s) | 473 |
| BseSI | GKGCMC | 1 cut(s) | 171 |
| BsiHKAI | GWGCWC | 1 cut(s) | 171 |
| BsiSI | CCGG | 3 cut(s) | 296, 537, 580 |
| BslFI | GGGAC | 1 cut(s) | 418 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 441 |
| BsmFI | GGGAC | 1 cut(s) | 418 |
| Bsp1286I | GDGCHC | 1 cut(s) | 171 |
| Bsp13I | TCCGGA | 2 cut(s) | 295, 579 |
| Bsp143I | GATC | 5 cut(s) | 148, 187, 361, 388, 504 |
| BspACI | CCGC | 1 cut(s) | 339 |
| BspCNI | CTCAG | 2 cut(s) | 191, 328 |
| BspEI | TCCGGA | 2 cut(s) | 295, 579 |
| BspHI | TCATGA | 1 cut(s) | 633 |
| BspMI | ACCTGC | 1 cut(s) | 319 |
| BspPI | GGATC | 1 cut(s) | 356 |
| BsrI | ACTGG | 1 cut(s) | 473 |
| BssECI | CCNNGG | 1 cut(s) | 251 |
| BssMI | GATC | 5 cut(s) | 148, 187, 361, 388, 504 |
| BssT1I | CCWWGG | 1 cut(s) | 251 |
| BstBAI | YACGTR | 1 cut(s) | 203 |
| BstDEI | CTNAG | 3 cut(s) | 155, 178, 315 |
| BstEII | GGTNACC | 1 cut(s) | 280 |
| BstF5I | GGATG | 3 cut(s) | 192, 304, 364 |
| BstKTI | GATC | 5 cut(s) | 151, 190, 364, 391, 507 |
| BstMBI | GATC | 5 cut(s) | 148, 187, 361, 388, 504 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 500, 509, 550 |
| BstPI | GGTNACC | 1 cut(s) | 280 |
| BstSLI | GKGCMC | 1 cut(s) | 171 |
| BstX2I | RGATCY | 1 cut(s) | 187 |
| BstYI | RGATCY | 1 cut(s) | 187 |
| BsuI | GTATCC | 1 cut(s) | 75 |
| BtgZI | GCGATG | 1 cut(s) | 21 |
| BtsCI | GGATG | 3 cut(s) | 192, 304, 364 |
| BveI | ACCTGC | 1 cut(s) | 319 |
| CciI | TCATGA | 1 cut(s) | 633 |
| CviAII | CATG | 3 cut(s) | 462, 520, 634 |
| CviJI | RGCY | 4 cut(s) | 328, 494, 512, 553 |
| CviKI_1 | RGCY | 4 cut(s) | 328, 494, 512, 553 |
| DdeI | CTNAG | 3 cut(s) | 155, 178, 315 |
| DpnI | GATC | 5 cut(s) | 150, 189, 363, 390, 506 |
| DpnII | GATC | 5 cut(s) | 148, 187, 361, 388, 504 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 23 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 1 cut(s) | 251 |
| Eco32I | GATATC | 1 cut(s) | 112 |
| Eco91I | GGTNACC | 1 cut(s) | 280 |
| EcoO65I | GGTNACC | 1 cut(s) | 280 |
| EcoRV | GATATC | 1 cut(s) | 112 |
| EcoT14I | CCWWGG | 1 cut(s) | 251 |
| EcoT22I | ATGCAT | 1 cut(s) | 592 |
| ErhI | CCWWGG | 1 cut(s) | 251 |
| FaeI | CATG | 3 cut(s) | 465, 523, 637 |
| FaiI | YATR | 8 cut(s) | 21, 258, 453, 463, 521, 592, 610, 635 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 312, 344, 394, 426 |
| FaqI | GGGAC | 1 cut(s) | 418 |
| FatI | CATG | 3 cut(s) | 461, 519, 633 |
| FbaI | TGATCA | 1 cut(s) | 388 |
| FokI | GGATG | 3 cut(s) | 179, 311, 371 |
| FspBI | CTAG | 1 cut(s) | 600 |
| HapII | CCGG | 3 cut(s) | 296, 537, 580 |
| Hin1II | CATG | 3 cut(s) | 465, 523, 637 |
| HindIII | AAGCTT | 3 cut(s) | 326, 492, 551 |
| HinfI | GANTC | 4 cut(s) | 69, 292, 418, 596 |
| HpaII | CCGG | 3 cut(s) | 296, 537, 580 |
| HphI | GGTGA | 1 cut(s) | 274 |
| Hpy166II | GTNNAC | 1 cut(s) | 169 |
| Hpy188I | TCNGA | 3 cut(s) | 16, 181, 318 |
| Hpy188III | TCNNGA | 5 cut(s) | 95, 215, 296, 580, 634 |
| Hpy8I | GTNNAC | 1 cut(s) | 169 |
| HpyAV | CCTTC | 1 cut(s) | 396 |
| HpyCH4IV | ACGT | 1 cut(s) | 202 |
| HpyCH4V | TGCA | 4 cut(s) | 59, 169, 260, 590 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 500, 509, 550 |
| HpyF3I | CTNAG | 3 cut(s) | 155, 178, 315 |
| HpySE526I | ACGT | 1 cut(s) | 202 |
| Hsp92II | CATG | 3 cut(s) | 465, 523, 637 |
| Kpn2I | TCCGGA | 2 cut(s) | 295, 579 |
| Ksp22I | TGATCA | 1 cut(s) | 388 |
| Kzo9I | GATC | 5 cut(s) | 148, 187, 361, 388, 504 |
| LpnPI | CCDG | 7 cut(s) | 228, 309, 324, 399, 486, 550, 593 |
| LweI | GCATC | 2 cut(s) | 46, 577 |
| MaeI | CTAG | 1 cut(s) | 600 |
| MaeII | ACGT | 1 cut(s) | 202 |
| MaeIII | GTNAC | 2 cut(s) | 241, 280 |
| MalI | GATC | 5 cut(s) | 150, 189, 363, 390, 506 |
| MboI | GATC | 5 cut(s) | 148, 187, 361, 388, 504 |
| MboII | GAAGA | 2 cut(s) | 197, 461 |
| MfeI | CAATTG | 3 cut(s) | 224, 392, 557 |
| MflI | RGATCY | 1 cut(s) | 187 |
| MhlI | GDGCHC | 1 cut(s) | 171 |
| MluCI | AATT | 5 cut(s) | 224, 271, 392, 479, 557 |
| MlyI | GAGTC | 3 cut(s) | 63, 412, 605 |
| MnlI | CCTC | 2 cut(s) | 175, 540 |
| Mph1103I | ATGCAT | 1 cut(s) | 592 |
| MroI | TCCGGA | 2 cut(s) | 295, 579 |
| MroXI | GAANNNNTTC | 1 cut(s) | 210 |
| MseI | TTAA | 3 cut(s) | 236, 333, 528 |
| MspI | CCGG | 3 cut(s) | 296, 537, 580 |
| MunI | CAATTG | 3 cut(s) | 224, 392, 557 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 500, 509, 550 |
| NdeII | GATC | 5 cut(s) | 148, 187, 361, 388, 504 |
| NlaIII | CATG | 3 cut(s) | 465, 523, 637 |
| NmuCI | GTSAC | 1 cut(s) | 280 |
| NsiI | ATGCAT | 1 cut(s) | 592 |
| PagI | TCATGA | 1 cut(s) | 633 |
| PaqCI | CACCTGC | 1 cut(s) | 319 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 73 |
| PdmI | GAANNNNTTC | 1 cut(s) | 210 |
| PfeI | GAWTC | 1 cut(s) | 292 |
| PleI | GAGTC | 3 cut(s) | 63, 412, 604 |
| PpsI | GAGTC | 3 cut(s) | 63, 412, 604 |
| Ppu21I | YACGTR | 1 cut(s) | 203 |
| PshBI | ATTAAT | 1 cut(s) | 528 |
| PspEI | GGTNACC | 1 cut(s) | 280 |
| PsuI | RGATCY | 1 cut(s) | 187 |
| SaqAI | TTAA | 3 cut(s) | 236, 333, 528 |
| Sau3AI | GATC | 5 cut(s) | 148, 187, 361, 388, 504 |
| SchI | GAGTC | 3 cut(s) | 63, 412, 605 |
| SduI | GDGCHC | 1 cut(s) | 171 |
| SetI | ASST | 7 cut(s) | 205, 243, 282, 313, 330, 496, 555 |
| SfaNI | GCATC | 2 cut(s) | 46, 577 |
| Sse9I | AATT | 5 cut(s) | 224, 271, 392, 479, 557 |
| SsiI | CCGC | 1 cut(s) | 339 |
| SspI | AATATT | 1 cut(s) | 380 |
| SspMI | CTAG | 1 cut(s) | 600 |
| StyI | CCWWGG | 1 cut(s) | 251 |
| TaiI | ACGT | 1 cut(s) | 205 |
| TaqI | TCGA | 2 cut(s) | 76, 604 |
| TasI | AATT | 5 cut(s) | 224, 271, 392, 479, 557 |
| TfiI | GAWTC | 1 cut(s) | 292 |
| Tru1I | TTAA | 3 cut(s) | 236, 333, 528 |
| Tru9I | TTAA | 3 cut(s) | 236, 333, 528 |
| TseFI | GTSAC | 1 cut(s) | 280 |
| Tsp45I | GTSAC | 1 cut(s) | 280 |
| TspDTI | ATGAA | 3 cut(s) | 222, 588, 622 |
| VneI | GTGCAC | 1 cut(s) | 167 |
| VspI | ATTAAT | 1 cut(s) | 528 |
| XmnI | GAANNNNTTC | 1 cut(s) | 210 |
| XspI | CTAG | 1 cut(s) | 600 |
| Zsp2I | ATGCAT | 1 cut(s) | 592 |