transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1653 |
| Acc65I | GGTACC | 1 cut(s) | 1113 |
| AccB1I | GGYRCC | 1 cut(s) | 1113 |
| AccBSI | CCGCTC | 1 cut(s) | 1741 |
| AccI | GTMKAC | 3 cut(s) | 2070, 2109, 3783 |
| AccII | CGCG | 1 cut(s) | 3736 |
| AciI | CCGC | 3 cut(s) | 1422, 1589, 1739 |
| AclI | AACGTT | 2 cut(s) | 1712, 2362 |
| AclWI | GGATC | 5 cut(s) | 893, 1006, 1136, 1886, 2633 |
| AcoI | YGGCCR | 3 cut(s) | 1017, 2232, 2463 |
| AcuI | CTGAAG | 1 cut(s) | 1787 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 351, 597, 1354, 1495, 2618 |
| AflIII | ACRYGT | 3 cut(s) | 1834, 3101, 3786 |
| AjiI | CACGTC | 1 cut(s) | 2230 |
| AjnI | CCWGG | 2 cut(s) | 1894, 3725 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2069, 2101 |
| AluBI | AGCT | 7 cut(s) | 165, 270, 962, 1413, 1456, 1507, 1873 |
| AluI | AGCT | 7 cut(s) | 165, 270, 962, 1413, 1456, 1507, 1873 |
| Alw21I | GWGCWC | 5 cut(s) | 1037, 1582, 1728, 2427, 2436 |
| Alw26I | GTCTC | 5 cut(s) | 772, 987, 1855, 2725, 3152 |
| Alw44I | GTGCAC | 2 cut(s) | 1578, 1724 |
| AlwI | GGATC | 5 cut(s) | 893, 1006, 1136, 1886, 2633 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 471, 833 |
| AoxI | GGCC | 8 cut(s) | 1017, 1211, 1428, 1486, 2232, 2463, 2708, 3540 |
| ApaLI | GTGCAC | 2 cut(s) | 1578, 1724 |
| ApeKI | GCWGC | 5 cut(s) | 833, 1507, 1510, 1564, 1873 |
| AseI | ATTAAT | 3 cut(s) | 656, 1971, 3414 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 708 |
| Asp718I | GGTACC | 1 cut(s) | 1113 |
| AspA2I | CCTAGG | 2 cut(s) | 2503, 2735 |
| AspS9I | GGNCC | 4 cut(s) | 536, 841, 3522, 3541 |
| AsuC2I | CCSGG | 1 cut(s) | 1167 |
| AsuHPI | GGTGA | 4 cut(s) | 1172, 2276, 2498, 2891 |
| AsuII | TTCGAA | 1 cut(s) | 1619 |
| AvaII | GGWCC | 3 cut(s) | 536, 841, 3522 |
| AvrII | CCTAGG | 2 cut(s) | 2503, 2735 |
| BaeGI | GKGCMC | 4 cut(s) | 1582, 1653, 1728, 3442 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 466, 499, 1105, 1138 |
| BalI | TGGCCA | 2 cut(s) | 1019, 2234 |
| BanI | GGYRCC | 1 cut(s) | 1113 |
| Bbv12I | GWGCWC | 5 cut(s) | 1037, 1582, 1728, 2427, 2436 |
| BbvI | GCAGC | 5 cut(s) | 820, 1494, 1497, 1551, 1860 |
| BccI | CCATC | 8 cut(s) | 1083, 1164, 1483, 2021, 2182, 2408, 2680, 3036 |
| BceAI | ACGGC | 2 cut(s) | 923, 2450 |
| BciT130I | CCWGG | 2 cut(s) | 1896, 3727 |
| BciVI | GTATCC | 2 cut(s) | 598, 3732 |
| BclI | TGATCA | 3 cut(s) | 279, 1057, 1279 |
| BcnI | CCSGG | 1 cut(s) | 1167 |
| BcoDI | GTCTC | 5 cut(s) | 772, 987, 1855, 2725, 3152 |
| BfmI | CTRYAG | 2 cut(s) | 2127, 3207 |
| BfuAI | ACCTGC | 1 cut(s) | 1653 |
| BfuI | GTATCC | 2 cut(s) | 598, 3732 |
| BisI | GCNGC | 6 cut(s) | 834, 1508, 1511, 1565, 1589, 1874 |
| BlnI | CCTAGG | 2 cut(s) | 2503, 2735 |
| BlsI | GCNGC | 6 cut(s) | 835, 1509, 1512, 1566, 1590, 1875 |
| Bme1390I | CCNGG | 3 cut(s) | 1167, 1896, 3727 |
| Bme18I | GGWCC | 3 cut(s) | 536, 841, 3522 |
| BmgBI | CACGTC | 1 cut(s) | 2230 |
| BmgT120I | GGNCC | 4 cut(s) | 536, 841, 3522, 3541 |
| BmiI | GGNNCC | 7 cut(s) | 6, 537, 538, 1115, 2242, 2555, 2602 |
| BmrFI | CCNGG | 3 cut(s) | 1167, 1896, 3727 |
| BmsI | GCATC | 9 cut(s) | 283, 305, 781, 1738, 1973, 2006, 2374, 2396, 3347 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1835, 1867 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1584, 3637 |
| Bpu14I | TTCGAA | 1 cut(s) | 1619 |
| BpuEI | CTTGAG | 2 cut(s) | 534, 3158 |
| BpuMI | CCSGG | 1 cut(s) | 1167 |
| Bsa29I | ATCGAT | 3 cut(s) | 1001, 2059, 2562 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1278 |
| BsaI | GGTCTC | 1 cut(s) | 2725 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1521, 1551 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 351, 597, 1354, 1495, 2618 |
| Bse1I | ACTGG | 2 cut(s) | 476, 827 |
| Bse3DI | GCAATG | 1 cut(s) | 1863 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1278 |
| BseBI | CCWGG | 2 cut(s) | 1896, 3727 |
| BseCI | ATCGAT | 3 cut(s) | 1001, 2059, 2562 |
| BseGI | GGATG | 9 cut(s) | 1094, 1175, 1465, 1475, 1696, 2389, 2691, 3047, 3410 |
| BseJI | GATNNNNATC | 1 cut(s) | 1278 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 351, 597, 1354, 1495, 2618 |
| BseMI | GCAATG | 1 cut(s) | 1863 |
| BseMII | CTCAG | 1 cut(s) | 998 |
| BseNI | ACTGG | 2 cut(s) | 476, 827 |
| BseRI | GAGGAG | 2 cut(s) | 1511, 2686 |
| BseSI | GKGCMC | 4 cut(s) | 1582, 1653, 1728, 3442 |
| BseXI | GCAGC | 5 cut(s) | 820, 1494, 1497, 1551, 1860 |
| Bsh1236I | CGCG | 1 cut(s) | 3736 |
| BshFI | GGCC | 8 cut(s) | 1019, 1213, 1430, 1488, 2234, 2465, 2710, 3542 |
| BshNI | GGYRCC | 1 cut(s) | 1113 |
| BshVI | ATCGAT | 3 cut(s) | 1001, 2059, 2562 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1037, 1582, 1728, 2427, 2436 |
| BsiSI | CCGG | 1 cut(s) | 1166 |
| BsiWI | CGTACG | 1 cut(s) | 488 |
| BslFI | GGGAC | 2 cut(s) | 522, 613 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 351, 597, 1354, 1495, 2618 |
| BsmAI | GTCTC | 5 cut(s) | 772, 987, 1855, 2725, 3152 |
| BsmFI | GGGAC | 2 cut(s) | 522, 613 |
| BsmI | GAATGC | 3 cut(s) | 871, 3197, 3750 |
| BsnI | GGCC | 8 cut(s) | 1019, 1213, 1430, 1488, 2234, 2465, 2710, 3542 |
| Bso31I | GGTCTC | 1 cut(s) | 2725 |
| Bsp119I | TTCGAA | 1 cut(s) | 1619 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1037, 1582, 1653, 1728, 2427, 2436, 3442 |
| Bsp1407I | TGTACA | 1 cut(s) | 1796 |
| BspACI | CCGC | 3 cut(s) | 1422, 1589, 1739 |
| BspANI | GGCC | 8 cut(s) | 1019, 1213, 1430, 1488, 2234, 2465, 2710, 3542 |
| BspCNI | CTCAG | 1 cut(s) | 997 |
| BspDI | ATCGAT | 3 cut(s) | 1001, 2059, 2562 |
| BspFNI | CGCG | 1 cut(s) | 3736 |
| BspHI | TCATGA | 4 cut(s) | 282, 2202, 3667, 3759 |
| BspLI | GGNNCC | 7 cut(s) | 6, 537, 538, 1115, 2242, 2555, 2602 |
| BspMI | ACCTGC | 1 cut(s) | 1653 |
| BspPI | GGATC | 5 cut(s) | 893, 1006, 1136, 1886, 2633 |
| BspT104I | TTCGAA | 1 cut(s) | 1619 |
| BspT107I | GGYRCC | 1 cut(s) | 1113 |
| BspTNI | GGTCTC | 1 cut(s) | 2725 |
| BsrBI | CCGCTC | 1 cut(s) | 1741 |
| BsrDI | GCAATG | 1 cut(s) | 1863 |
| BsrGI | TGTACA | 1 cut(s) | 1796 |
| BsrI | ACTGG | 2 cut(s) | 476, 827 |
| BssNAI | GTATAC | 1 cut(s) | 2071 |
| BssT1I | CCWWGG | 8 cut(s) | 697, 837, 1133, 1425, 2235, 2503, 2568, 2735 |
| Bst1107I | GTATAC | 1 cut(s) | 2071 |
| Bst2UI | CCWGG | 2 cut(s) | 1896, 3727 |
| Bst4CI | ACNGT | 4 cut(s) | 467, 493, 499, 2929 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 806 |
| BstAUI | TGTACA | 1 cut(s) | 1796 |
| BstBI | TTCGAA | 1 cut(s) | 1619 |
| BstC8I | GCNNGC | 2 cut(s) | 2050, 2436 |
| BstDSI | CCRYGG | 1 cut(s) | 905 |
| BstEII | GGTNACC | 1 cut(s) | 493 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1493 |
| BstF5I | GGATG | 9 cut(s) | 1094, 1175, 1465, 1475, 1696, 2389, 2691, 3047, 3410 |
| BstFNI | CGCG | 1 cut(s) | 3736 |
| BstMAI | GTCTC | 5 cut(s) | 772, 987, 1855, 2725, 3152 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 806, 857, 866, 1550, 1870, 2240, 2431 |
| BstNI | CCWGG | 2 cut(s) | 1896, 3727 |
| BstNSI | RCATGY | 7 cut(s) | 22, 1838, 1946, 2052, 2680, 3105, 3790 |
| BstPI | GGTNACC | 1 cut(s) | 493 |
| BstSCI | CCNGG | 3 cut(s) | 1165, 1894, 3725 |
| BstSFI | CTRYAG | 2 cut(s) | 2127, 3207 |
| BstSLI | GKGCMC | 4 cut(s) | 1582, 1653, 1728, 3442 |
| BstUI | CGCG | 1 cut(s) | 3736 |
| BstV1I | GCAGC | 5 cut(s) | 820, 1494, 1497, 1551, 1860 |
| BstX2I | RGATCY | 2 cut(s) | 898, 1891 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2575 |
| BstYI | RGATCY | 2 cut(s) | 898, 1891 |
| BstZ17I | GTATAC | 1 cut(s) | 2071 |
| Bsu15I | ATCGAT | 3 cut(s) | 1001, 2059, 2562 |
| BsuI | GTATCC | 2 cut(s) | 598, 3732 |
| BsuRI | GGCC | 8 cut(s) | 1019, 1213, 1430, 1488, 2234, 2465, 2710, 3542 |
| BsuTUI | ATCGAT | 3 cut(s) | 1001, 2059, 2562 |
| BtgI | CCRYGG | 1 cut(s) | 905 |
| BtgZI | GCGATG | 1 cut(s) | 2160 |
| BtrI | CACGTC | 1 cut(s) | 2230 |
| BtsCI | GGATG | 9 cut(s) | 1094, 1175, 1465, 1475, 1696, 2389, 2691, 3047, 3410 |
| BtsIMutI | CAGTG | 2 cut(s) | 834, 2925 |
| BveI | ACCTGC | 1 cut(s) | 1653 |
| Cac8I | GCNNGC | 2 cut(s) | 2050, 2436 |
| CaiI | CAGNNNCTG | 2 cut(s) | 471, 833 |
| CciI | TCATGA | 4 cut(s) | 282, 2202, 3667, 3759 |
| Cfr13I | GGNCC | 4 cut(s) | 536, 841, 3522, 3541 |
| ClaI | ATCGAT | 3 cut(s) | 1001, 2059, 2562 |
| CseI | GACGC | 1 cut(s) | 3725 |
| DraI | TTTAAA | 5 cut(s) | 73, 2281, 2935, 2953, 3700 |
| EaeI | YGGCCR | 3 cut(s) | 1017, 2232, 2463 |
| Eco130I | CCWWGG | 8 cut(s) | 697, 837, 1133, 1425, 2235, 2503, 2568, 2735 |
| Eco147I | AGGCCT | 1 cut(s) | 1488 |
| Eco31I | GGTCTC | 1 cut(s) | 2725 |
| Eco47I | GGWCC | 3 cut(s) | 536, 841, 3522 |
| Eco57I | CTGAAG | 1 cut(s) | 1787 |
| Eco91I | GGTNACC | 1 cut(s) | 493 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1493 |
| EcoO109I | RGGNCCY | 2 cut(s) | 536, 841 |
| EcoO65I | GGTNACC | 1 cut(s) | 493 |
| EcoRI | GAATTC | 2 cut(s) | 684, 3095 |
| EcoRII | CCWGG | 2 cut(s) | 1894, 3725 |
| EcoT14I | CCWWGG | 8 cut(s) | 697, 837, 1133, 1425, 2235, 2503, 2568, 2735 |
| EcoT22I | ATGCAT | 5 cut(s) | 298, 796, 1011, 1999, 2389 |
| ErhI | CCWWGG | 8 cut(s) | 697, 837, 1133, 1425, 2235, 2503, 2568, 2735 |
| FalI | AAGNNNNNCTT | 7 cut(s) | 38, 750, 782, 1397, 1429, 2228, 2260 |
| FaqI | GGGAC | 2 cut(s) | 522, 613 |
| FauI | CCCGC | 1 cut(s) | 1746 |
| FauNDI | CATATG | 3 cut(s) | 1022, 3285, 3716 |
| FbaI | TGATCA | 3 cut(s) | 279, 1057, 1279 |
| FblI | GTMKAC | 3 cut(s) | 2070, 2109, 3783 |
| Fnu4HI | GCNGC | 6 cut(s) | 834, 1508, 1511, 1565, 1589, 1874 |
| FokI | GGATG | 9 cut(s) | 1101, 1182, 1452, 1462, 1703, 2396, 2698, 3054, 3417 |
| Fsp4HI | GCNGC | 6 cut(s) | 834, 1508, 1511, 1565, 1589, 1874 |
| GluI | GCNGC | 6 cut(s) | 834, 1508, 1511, 1565, 1589, 1874 |
| HaeIII | GGCC | 8 cut(s) | 1019, 1213, 1430, 1488, 2234, 2465, 2710, 3542 |
| HapII | CCGG | 1 cut(s) | 1166 |
| HgaI | GACGC | 1 cut(s) | 3725 |
| HincII | GTYRAC | 2 cut(s) | 226, 817 |
| HindII | GTYRAC | 2 cut(s) | 226, 817 |
| HindIII | AAGCTT | 3 cut(s) | 163, 268, 1411 |
| HpaI | GTTAAC | 1 cut(s) | 226 |
| HpaII | CCGG | 1 cut(s) | 1166 |
| HphI | GGTGA | 4 cut(s) | 1172, 2276, 2498, 2891 |
| Hpy166II | GTNNAC | 9 cut(s) | 226, 817, 1265, 1580, 1726, 2071, 2110, 3784, 3792 |
| Hpy188I | TCNGA | 3 cut(s) | 943, 2290, 3836 |
| Hpy8I | GTNNAC | 9 cut(s) | 226, 817, 1265, 1580, 1726, 2071, 2110, 3784, 3792 |
| HpyCH4III | ACNGT | 4 cut(s) | 467, 493, 499, 2929 |
| HpyCH4IV | ACGT | 4 cut(s) | 67, 1712, 2229, 2362 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 806, 857, 866, 1550, 1870, 2240, 2431 |
| HpySE526I | ACGT | 4 cut(s) | 67, 1712, 2229, 2362 |
| KflI | GGGWCCC | 1 cut(s) | 536 |
| KpnI | GGTACC | 1 cut(s) | 1117 |
| Ksp22I | TGATCA | 3 cut(s) | 279, 1057, 1279 |
| KspAI | GTTAAC | 1 cut(s) | 226 |
| LmnI | GCTCC | 9 cut(s) | 1453, 1529, 1746, 2240, 2422, 2431, 2579, 2673, 3711 |
| Lsp1109I | GCAGC | 5 cut(s) | 820, 1494, 1497, 1551, 1860 |
| LweI | GCATC | 9 cut(s) | 283, 305, 781, 1738, 1973, 2006, 2374, 2396, 3347 |
| MaeII | ACGT | 4 cut(s) | 67, 1712, 2229, 2362 |
| MaeIII | GTNAC | 6 cut(s) | 467, 493, 1364, 2534, 3029, 3645 |
| MbiI | CCGCTC | 1 cut(s) | 1741 |
| MfeI | CAATTG | 3 cut(s) | 108, 771, 1070 |
| MflI | RGATCY | 2 cut(s) | 898, 1891 |
| MhlI | GDGCHC | 7 cut(s) | 1037, 1582, 1653, 1728, 2427, 2436, 3442 |
| MlsI | TGGCCA | 2 cut(s) | 1019, 2234 |
| MluNI | TGGCCA | 2 cut(s) | 1019, 2234 |
| MlyI | GAGTC | 3 cut(s) | 595, 756, 3154 |
| MmeI | TCCRAC | 5 cut(s) | 668, 868, 2770, 3004, 3689 |
| Mox20I | TGGCCA | 2 cut(s) | 1019, 2234 |
| Mph1103I | ATGCAT | 5 cut(s) | 298, 796, 1011, 1999, 2389 |
| MroXI | GAANNNNTTC | 1 cut(s) | 708 |
| MscI | TGGCCA | 2 cut(s) | 1019, 2234 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1053, 1839, 1882, 2587, 2988 |
| Msp20I | TGGCCA | 2 cut(s) | 1019, 2234 |
| MspI | CCGG | 1 cut(s) | 1166 |
| MspR9I | CCNGG | 3 cut(s) | 1167, 1896, 3727 |
| MunI | CAATTG | 3 cut(s) | 108, 771, 1070 |
| Mva1269I | GAATGC | 3 cut(s) | 871, 3197, 3750 |
| MvaI | CCWGG | 2 cut(s) | 1896, 3727 |
| MvnI | CGCG | 1 cut(s) | 3736 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 806, 857, 866, 1550, 1870, 2240, 2431 |
| NciI | CCSGG | 1 cut(s) | 1167 |
| NdeI | CATATG | 3 cut(s) | 1022, 3285, 3716 |
| NlaIV | GGNNCC | 7 cut(s) | 6, 537, 538, 1115, 2242, 2555, 2602 |
| NmuCI | GTSAC | 1 cut(s) | 1364 |
| NsiI | ATGCAT | 5 cut(s) | 298, 796, 1011, 1999, 2389 |
| NspI | RCATGY | 7 cut(s) | 22, 1838, 1946, 2052, 2680, 3105, 3790 |
| NspV | TTCGAA | 1 cut(s) | 1619 |
| PaeI | GCATGC | 1 cut(s) | 2052 |
| PagI | TCATGA | 4 cut(s) | 282, 2202, 3667, 3759 |
| PceI | AGGCCT | 1 cut(s) | 1488 |
| PciI | ACATGT | 3 cut(s) | 1834, 3101, 3786 |
| PctI | GAATGC | 3 cut(s) | 871, 3197, 3750 |
| PdmI | GAANNNNTTC | 1 cut(s) | 708 |
| Pfl23II | CGTACG | 1 cut(s) | 488 |
| PfoI | TCCNGGA | 1 cut(s) | 1165 |
| PkrI | GCNGC | 6 cut(s) | 835, 1509, 1512, 1566, 1590, 1875 |
| PleI | GAGTC | 3 cut(s) | 595, 756, 3154 |
| PpsI | GAGTC | 3 cut(s) | 595, 756, 3154 |
| PpuMI | RGGWCCY | 2 cut(s) | 536, 841 |
| PscI | ACATGT | 3 cut(s) | 1834, 3101, 3786 |
| PshBI | ATTAAT | 3 cut(s) | 656, 1971, 3414 |
| Psp1406I | AACGTT | 2 cut(s) | 1712, 2362 |
| Psp5II | RGGWCCY | 2 cut(s) | 536, 841 |
| Psp6I | CCWGG | 2 cut(s) | 1894, 3725 |
| PspEI | GGTNACC | 1 cut(s) | 493 |
| PspGI | CCWGG | 2 cut(s) | 1894, 3725 |
| PspLI | CGTACG | 1 cut(s) | 488 |
| PspN4I | GGNNCC | 7 cut(s) | 6, 537, 538, 1115, 2242, 2555, 2602 |
| PspPI | GGNCC | 4 cut(s) | 536, 841, 3522, 3541 |
| PspPPI | RGGWCCY | 2 cut(s) | 536, 841 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3713, 3745 |
| PstNI | CAGNNNCTG | 2 cut(s) | 471, 833 |
| PsuI | RGATCY | 2 cut(s) | 898, 1891 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1053, 1839, 1882, 2587, 2988 |
| SatI | GCNGC | 6 cut(s) | 834, 1508, 1511, 1565, 1589, 1874 |
| Sau96I | GGNCC | 4 cut(s) | 536, 841, 3522, 3541 |
| SchI | GAGTC | 3 cut(s) | 595, 756, 3154 |
| ScrFI | CCNGG | 3 cut(s) | 1167, 1896, 3727 |
| SduI | GDGCHC | 7 cut(s) | 1037, 1582, 1653, 1728, 2427, 2436, 3442 |
| SfaNI | GCATC | 9 cut(s) | 283, 305, 781, 1738, 1973, 2006, 2374, 2396, 3347 |
| SfcI | CTRYAG | 2 cut(s) | 2127, 3207 |
| SfuI | TTCGAA | 1 cut(s) | 1619 |
| SinI | GGWCC | 3 cut(s) | 536, 841, 3522 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1053, 1839, 1882, 2587, 2988 |
| SmlI | CTYRAG | 2 cut(s) | 549, 3137 |
| SmoI | CTYRAG | 2 cut(s) | 549, 3137 |
| SphI | GCATGC | 1 cut(s) | 2052 |
| SseBI | AGGCCT | 1 cut(s) | 1488 |
| SsiI | CCGC | 3 cut(s) | 1422, 1589, 1739 |
| StuI | AGGCCT | 1 cut(s) | 1488 |
| StyD4I | CCNGG | 3 cut(s) | 1165, 1894, 3725 |
| StyI | CCWWGG | 8 cut(s) | 697, 837, 1133, 1425, 2235, 2503, 2568, 2735 |
| TaaI | ACNGT | 4 cut(s) | 467, 493, 499, 2929 |
| TaiI | ACGT | 4 cut(s) | 70, 1715, 2232, 2365 |
| TaqI | TCGA | 7 cut(s) | 452, 856, 1001, 1619, 2059, 2403, 2562 |
| TatI | WGTACW | 1 cut(s) | 1796 |
| TauI | GCSGC | 1 cut(s) | 1591 |
| TscAI | CASTG | 2 cut(s) | 834, 2932 |
| TseFI | GTSAC | 1 cut(s) | 1364 |
| TseI | GCWGC | 5 cut(s) | 833, 1507, 1510, 1564, 1873 |
| Tsp45I | GTSAC | 1 cut(s) | 1364 |
| TspGWI | ACGGA | 1 cut(s) | 3457 |
| TspRI | CASTG | 2 cut(s) | 834, 2932 |
| VneI | GTGCAC | 2 cut(s) | 1578, 1724 |
| VpaK11BI | GGWCC | 3 cut(s) | 536, 841, 3522 |
| VspI | ATTAAT | 3 cut(s) | 656, 1971, 3414 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1493 |
| XbaI | TCTAGA | 1 cut(s) | 2390 |
| XceI | RCATGY | 7 cut(s) | 22, 1838, 1946, 2052, 2680, 3105, 3790 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2227 |
| XmaJI | CCTAGG | 2 cut(s) | 2503, 2735 |
| XmiI | GTMKAC | 3 cut(s) | 2070, 2109, 3783 |
| XmnI | GAANNNNTTC | 1 cut(s) | 708 |
| Zsp2I | ATGCAT | 5 cut(s) | 298, 796, 1011, 1999, 2389 |