RNA splicing
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 237 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 718 |
| AclWI | GGATC | 2 cut(s) | 153, 632 |
| AcsI | RAATTY | 5 cut(s) | 230, 446, 575, 614, 659 |
| AcuI | CTGAAG | 1 cut(s) | 579 |
| AcyI | GRCGYC | 1 cut(s) | 238 |
| AdeI | CACNNNGTG | 1 cut(s) | 293 |
| AfaI | GTAC | 1 cut(s) | 462 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 718 |
| AflII | CTTAAG | 2 cut(s) | 584, 653 |
| AgsI | TTSAA | 2 cut(s) | 121, 674 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 586 |
| AluBI | AGCT | 3 cut(s) | 24, 499, 557 |
| AluI | AGCT | 3 cut(s) | 24, 499, 557 |
| Alw21I | GWGCWC | 1 cut(s) | 501 |
| AlwI | GGATC | 2 cut(s) | 153, 632 |
| AoxI | GGCC | 2 cut(s) | 682, 709 |
| ApeKI | GCWGC | 1 cut(s) | 554 |
| ApoI | RAATTY | 5 cut(s) | 230, 446, 575, 614, 659 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 365, 397 |
| AspLEI | GCGC | 1 cut(s) | 240 |
| AspS9I | GGNCC | 1 cut(s) | 486 |
| AsuC2I | CCSGG | 1 cut(s) | 148 |
| AsuHPI | GGTGA | 2 cut(s) | 60, 389 |
| AvaII | GGWCC | 1 cut(s) | 486 |
| BanI | GGYRCC | 1 cut(s) | 237 |
| BanII | GRGCYC | 1 cut(s) | 501 |
| Bbv12I | GWGCWC | 1 cut(s) | 501 |
| BbvI | GCAGC | 1 cut(s) | 566 |
| BccI | CCATC | 2 cut(s) | 38, 497 |
| BceAI | ACGGC | 1 cut(s) | 567 |
| BcnI | CCSGG | 1 cut(s) | 148 |
| BfaI | CTAG | 3 cut(s) | 137, 432, 591 |
| BfoI | RGCGCY | 1 cut(s) | 241 |
| BfrI | CTTAAG | 2 cut(s) | 584, 653 |
| BisI | GCNGC | 1 cut(s) | 555 |
| BlsI | GCNGC | 1 cut(s) | 556 |
| Bme1390I | CCNGG | 1 cut(s) | 148 |
| Bme18I | GGWCC | 1 cut(s) | 486 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 586 |
| BmgT120I | GGNCC | 1 cut(s) | 486 |
| BmiI | GGNNCC | 1 cut(s) | 239 |
| BmrFI | CCNGG | 1 cut(s) | 148 |
| BmsI | GCATC | 3 cut(s) | 140, 234, 428 |
| Bpu10I | CCTNAGC | 1 cut(s) | 20 |
| BpuEI | CTTGAG | 1 cut(s) | 493 |
| BpuMI | CCSGG | 1 cut(s) | 148 |
| BsaHI | GRCGYC | 1 cut(s) | 238 |
| BsaJI | CCNNGG | 4 cut(s) | 146, 468, 619, 630 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 718 |
| Bse3DI | GCAATG | 1 cut(s) | 526 |
| BseDI | CCNNGG | 4 cut(s) | 146, 468, 619, 630 |
| BseGI | GGATG | 2 cut(s) | 33, 131 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 718 |
| BseMI | GCAATG | 1 cut(s) | 526 |
| BseXI | GCAGC | 1 cut(s) | 566 |
| BshFI | GGCC | 2 cut(s) | 684, 711 |
| BshNI | GGYRCC | 1 cut(s) | 237 |
| BsiHKAI | GWGCWC | 1 cut(s) | 501 |
| BsiSI | CCGG | 1 cut(s) | 148 |
| BslFI | GGGAC | 1 cut(s) | 420 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 718 |
| BsmFI | GGGAC | 1 cut(s) | 420 |
| BsnI | GGCC | 2 cut(s) | 684, 711 |
| Bsp1286I | GDGCHC | 1 cut(s) | 501 |
| Bsp143I | GATC | 2 cut(s) | 158, 637 |
| Bsp19I | CCATGG | 3 cut(s) | 468, 619, 630 |
| BspANI | GGCC | 2 cut(s) | 684, 711 |
| BspLI | GGNNCC | 1 cut(s) | 239 |
| BspPI | GGATC | 2 cut(s) | 153, 632 |
| BspT107I | GGYRCC | 1 cut(s) | 237 |
| BspTI | CTTAAG | 2 cut(s) | 584, 653 |
| BsrDI | GCAATG | 1 cut(s) | 526 |
| BssECI | CCNNGG | 4 cut(s) | 146, 468, 619, 630 |
| BssMI | GATC | 2 cut(s) | 158, 637 |
| BssNI | GRCGYC | 1 cut(s) | 238 |
| BssT1I | CCWWGG | 3 cut(s) | 468, 619, 630 |
| Bst4CI | ACNGT | 2 cut(s) | 291, 377 |
| BstACI | GRCGYC | 1 cut(s) | 238 |
| BstAFI | CTTAAG | 2 cut(s) | 584, 653 |
| BstDEI | CTNAG | 1 cut(s) | 20 |
| BstDSI | CCRYGG | 3 cut(s) | 468, 619, 630 |
| BstF5I | GGATG | 2 cut(s) | 33, 131 |
| BstH2I | RGCGCY | 1 cut(s) | 241 |
| BstHHI | GCGC | 1 cut(s) | 240 |
| BstKTI | GATC | 2 cut(s) | 161, 640 |
| BstMBI | GATC | 2 cut(s) | 158, 637 |
| BstSCI | CCNGG | 1 cut(s) | 146 |
| BstV1I | GCAGC | 1 cut(s) | 566 |
| BstX2I | RGATCY | 1 cut(s) | 637 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 475 |
| BstYI | RGATCY | 1 cut(s) | 637 |
| BsuRI | GGCC | 2 cut(s) | 684, 711 |
| BtgI | CCRYGG | 3 cut(s) | 468, 619, 630 |
| BtsCI | GGATG | 2 cut(s) | 33, 131 |
| BtsI | GCAGTG | 1 cut(s) | 480 |
| BtsIMutI | CAGTG | 1 cut(s) | 480 |
| CfoI | GCGC | 1 cut(s) | 240 |
| Cfr13I | GGNCC | 1 cut(s) | 486 |
| Csp6I | GTAC | 1 cut(s) | 461 |
| CviAII | CATG | 3 cut(s) | 469, 620, 631 |
| CviJI | RGCY | 5 cut(s) | 24, 499, 557, 684, 711 |
| CviKI_1 | RGCY | 5 cut(s) | 24, 499, 557, 684, 711 |
| CviQI | GTAC | 1 cut(s) | 461 |
| DdeI | CTNAG | 1 cut(s) | 20 |
| DinI | GGCGCC | 1 cut(s) | 239 |
| DpnI | GATC | 2 cut(s) | 160, 639 |
| DpnII | GATC | 2 cut(s) | 158, 637 |
| DraI | TTTAAA | 2 cut(s) | 250, 451 |
| DraIII | CACNNNGTG | 1 cut(s) | 293 |
| DriI | GACNNNNNGTC | 1 cut(s) | 586 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 586 |
| Ecl136II | GAGCTC | 1 cut(s) | 499 |
| Eco130I | CCWWGG | 3 cut(s) | 468, 619, 630 |
| Eco147I | AGGCCT | 1 cut(s) | 684 |
| Eco24I | GRGCYC | 1 cut(s) | 501 |
| Eco47I | GGWCC | 1 cut(s) | 486 |
| Eco53kI | GAGCTC | 1 cut(s) | 499 |
| Eco57I | CTGAAG | 1 cut(s) | 579 |
| EcoICRI | GAGCTC | 1 cut(s) | 499 |
| EcoT14I | CCWWGG | 3 cut(s) | 468, 619, 630 |
| EcoT22I | ATGCAT | 1 cut(s) | 539 |
| EcoT38I | GRGCYC | 1 cut(s) | 501 |
| EgeI | GGCGCC | 1 cut(s) | 239 |
| EheI | GGCGCC | 1 cut(s) | 239 |
| ErhI | CCWWGG | 3 cut(s) | 468, 619, 630 |
| FaeI | CATG | 3 cut(s) | 472, 623, 634 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 35 |
| FaqI | GGGAC | 1 cut(s) | 420 |
| FatI | CATG | 3 cut(s) | 468, 619, 630 |
| Fnu4HI | GCNGC | 1 cut(s) | 555 |
| FokI | GGATG | 2 cut(s) | 20, 118 |
| FriOI | GRGCYC | 1 cut(s) | 501 |
| Fsp4HI | GCNGC | 1 cut(s) | 555 |
| FspBI | CTAG | 3 cut(s) | 137, 432, 591 |
| GlaI | GCGC | 1 cut(s) | 239 |
| GluI | GCNGC | 1 cut(s) | 555 |
| HaeII | RGCGCY | 1 cut(s) | 241 |
| HaeIII | GGCC | 2 cut(s) | 684, 711 |
| HapII | CCGG | 1 cut(s) | 148 |
| HhaI | GCGC | 1 cut(s) | 240 |
| Hin1I | GRCGYC | 1 cut(s) | 238 |
| Hin1II | CATG | 3 cut(s) | 472, 623, 634 |
| Hin6I | GCGC | 1 cut(s) | 238 |
| HinP1I | GCGC | 1 cut(s) | 238 |
| HpaII | CCGG | 1 cut(s) | 148 |
| HphI | GGTGA | 2 cut(s) | 60, 389 |
| Hpy166II | GTNNAC | 2 cut(s) | 349, 478 |
| Hpy188I | TCNGA | 3 cut(s) | 111, 367, 486 |
| Hpy188III | TCNNGA | 2 cut(s) | 385, 437 |
| Hpy8I | GTNNAC | 2 cut(s) | 349, 478 |
| HpyAV | CCTTC | 3 cut(s) | 393, 554, 674 |
| HpyCH4III | ACNGT | 2 cut(s) | 291, 377 |
| HpyCH4V | TGCA | 2 cut(s) | 287, 537 |
| HpyF3I | CTNAG | 1 cut(s) | 20 |
| Hsp92I | GRCGYC | 1 cut(s) | 238 |
| Hsp92II | CATG | 3 cut(s) | 472, 623, 634 |
| HspAI | GCGC | 1 cut(s) | 238 |
| KasI | GGCGCC | 1 cut(s) | 237 |
| Kzo9I | GATC | 2 cut(s) | 158, 637 |
| LmnI | GCTCC | 1 cut(s) | 496 |
| LpnPI | CCDG | 2 cut(s) | 161, 456 |
| Lsp1109I | GCAGC | 1 cut(s) | 566 |
| LweI | GCATC | 3 cut(s) | 140, 234, 428 |
| MaeI | CTAG | 3 cut(s) | 137, 432, 591 |
| MaeIII | GTNAC | 1 cut(s) | 186 |
| MalI | GATC | 2 cut(s) | 160, 639 |
| MboI | GATC | 2 cut(s) | 158, 637 |
| MboII | GAAGA | 5 cut(s) | 23, 467, 584, 647, 686 |
| MfeI | CAATTG | 1 cut(s) | 182 |
| MflI | RGATCY | 1 cut(s) | 637 |
| MhlI | GDGCHC | 1 cut(s) | 501 |
| MluCI | AATT | 9 cut(s) | 182, 217, 230, 251, 276, 446, 575, 614, 659 |
| Mly113I | GGCGCC | 1 cut(s) | 238 |
| MmeI | TCCRAC | 1 cut(s) | 390 |
| MnlI | CCTC | 4 cut(s) | 251, 381, 438, 517 |
| Mph1103I | ATGCAT | 1 cut(s) | 539 |
| MseI | TTAA | 9 cut(s) | 86, 93, 141, 249, 275, 327, 450, 585, 654 |
| MslI | CAYNNNNRTG | 1 cut(s) | 473 |
| MspA1I | CMGCKG | 1 cut(s) | 557 |
| MspCI | CTTAAG | 2 cut(s) | 584, 653 |
| MspI | CCGG | 1 cut(s) | 148 |
| MspR9I | CCNGG | 1 cut(s) | 148 |
| MunI | CAATTG | 1 cut(s) | 182 |
| NarI | GGCGCC | 1 cut(s) | 238 |
| NciI | CCSGG | 1 cut(s) | 148 |
| NcoI | CCATGG | 3 cut(s) | 468, 619, 630 |
| NdeII | GATC | 2 cut(s) | 158, 637 |
| NlaIII | CATG | 3 cut(s) | 472, 623, 634 |
| NlaIV | GGNNCC | 1 cut(s) | 239 |
| NmuCI | GTSAC | 1 cut(s) | 186 |
| NsiI | ATGCAT | 1 cut(s) | 539 |
| PceI | AGGCCT | 1 cut(s) | 684 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 381 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 718 |
| PkrI | GCNGC | 1 cut(s) | 556 |
| PluTI | GGCGCC | 1 cut(s) | 241 |
| Psp124BI | GAGCTC | 1 cut(s) | 501 |
| PspN4I | GGNNCC | 1 cut(s) | 239 |
| PspPI | GGNCC | 1 cut(s) | 486 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 147, 179 |
| PsuI | RGATCY | 1 cut(s) | 637 |
| PvuII | CAGCTG | 1 cut(s) | 557 |
| RsaI | GTAC | 1 cut(s) | 462 |
| RsaNI | GTAC | 1 cut(s) | 461 |
| RseI | CAYNNNNRTG | 1 cut(s) | 473 |
| SacI | GAGCTC | 1 cut(s) | 501 |
| SaqAI | TTAA | 9 cut(s) | 86, 93, 141, 249, 275, 327, 450, 585, 654 |
| SatI | GCNGC | 1 cut(s) | 555 |
| Sau3AI | GATC | 2 cut(s) | 158, 637 |
| Sau96I | GGNCC | 1 cut(s) | 486 |
| ScrFI | CCNGG | 1 cut(s) | 148 |
| SduI | GDGCHC | 1 cut(s) | 501 |
| SetI | ASST | 6 cut(s) | 26, 445, 501, 559, 565, 585 |
| SfaNI | GCATC | 3 cut(s) | 140, 234, 428 |
| SfoI | GGCGCC | 1 cut(s) | 239 |
| SinI | GGWCC | 1 cut(s) | 486 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 473 |
| SmlI | CTYRAG | 3 cut(s) | 508, 584, 653 |
| SmoI | CTYRAG | 3 cut(s) | 508, 584, 653 |
| Sse9I | AATT | 9 cut(s) | 182, 217, 230, 251, 276, 446, 575, 614, 659 |
| SseBI | AGGCCT | 1 cut(s) | 684 |
| SspDI | GGCGCC | 1 cut(s) | 237 |
| SspMI | CTAG | 3 cut(s) | 137, 432, 591 |
| SstI | GAGCTC | 1 cut(s) | 501 |
| StuI | AGGCCT | 1 cut(s) | 684 |
| StyD4I | CCNGG | 1 cut(s) | 146 |
| StyI | CCWWGG | 3 cut(s) | 468, 619, 630 |
| TaaI | ACNGT | 2 cut(s) | 291, 377 |
| TaqI | TCGA | 1 cut(s) | 384 |
| TasI | AATT | 9 cut(s) | 182, 217, 230, 251, 276, 446, 575, 614, 659 |
| Tru1I | TTAA | 9 cut(s) | 86, 93, 141, 249, 275, 327, 450, 585, 654 |
| Tru9I | TTAA | 9 cut(s) | 86, 93, 141, 249, 275, 327, 450, 585, 654 |
| TscAI | CASTG | 1 cut(s) | 480 |
| TseFI | GTSAC | 1 cut(s) | 186 |
| TseI | GCWGC | 1 cut(s) | 554 |
| Tsp45I | GTSAC | 1 cut(s) | 186 |
| TspDTI | ATGAA | 3 cut(s) | 34, 43, 693 |
| TspRI | CASTG | 1 cut(s) | 480 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 718 |
| Vha464I | CTTAAG | 2 cut(s) | 584, 653 |
| VpaK11BI | GGWCC | 1 cut(s) | 486 |
| XapI | RAATTY | 5 cut(s) | 230, 446, 575, 614, 659 |
| XspI | CTAG | 3 cut(s) | 137, 432, 591 |
| Zsp2I | ATGCAT | 1 cut(s) | 539 |