Integrase core domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 48 |
| AciI | CCGC | 2 cut(s) | 71, 186 |
| AclI | AACGTT | 1 cut(s) | 44 |
| AcsI | RAATTY | 2 cut(s) | 110, 337 |
| AgsI | TTSAA | 2 cut(s) | 41, 272 |
| Aor13HI | TCCGGA | 1 cut(s) | 48 |
| ApoI | RAATTY | 2 cut(s) | 110, 337 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AsuC2I | CCSGG | 1 cut(s) | 228 |
| AsuHPI | GGTGA | 1 cut(s) | 356 |
| AvaII | GGWCC | 1 cut(s) | 121 |
| BcnI | CCSGG | 1 cut(s) | 228 |
| Bme1390I | CCNGG | 1 cut(s) | 228 |
| Bme18I | GGWCC | 1 cut(s) | 121 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BmiI | GGNNCC | 1 cut(s) | 96 |
| BmrFI | CCNGG | 1 cut(s) | 228 |
| BmsI | GCATC | 3 cut(s) | 70, 305, 338 |
| BpuEI | CTTGAG | 1 cut(s) | 101 |
| BpuMI | CCSGG | 1 cut(s) | 228 |
| BsaJI | CCNNGG | 1 cut(s) | 226 |
| BsaWI | WCCGGW | 1 cut(s) | 48 |
| BseAI | TCCGGA | 1 cut(s) | 48 |
| BseDI | CCNNGG | 1 cut(s) | 226 |
| BseGI | GGATG | 1 cut(s) | 296 |
| BsiSI | CCGG | 2 cut(s) | 49, 228 |
| Bsp13I | TCCGGA | 1 cut(s) | 48 |
| BspACI | CCGC | 2 cut(s) | 71, 186 |
| BspEI | TCCGGA | 1 cut(s) | 48 |
| BspLI | GGNNCC | 1 cut(s) | 96 |
| BssECI | CCNNGG | 1 cut(s) | 226 |
| BstF5I | GGATG | 1 cut(s) | 296 |
| BstNSI | RCATGY | 1 cut(s) | 278 |
| BstSCI | CCNGG | 1 cut(s) | 226 |
| BtsCI | GGATG | 1 cut(s) | 296 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| CviAII | CATG | 3 cut(s) | 275, 280, 310 |
| Eco47I | GGWCC | 1 cut(s) | 121 |
| EcoO109I | RGGNCCY | 1 cut(s) | 121 |
| EcoT22I | ATGCAT | 1 cut(s) | 331 |
| FaeI | CATG | 3 cut(s) | 278, 283, 313 |
| FatI | CATG | 3 cut(s) | 274, 279, 309 |
| FokI | GGATG | 1 cut(s) | 283 |
| HapII | CCGG | 2 cut(s) | 49, 228 |
| Hin1II | CATG | 3 cut(s) | 278, 283, 313 |
| HinfI | GANTC | 1 cut(s) | 241 |
| HpaII | CCGG | 2 cut(s) | 49, 228 |
| HphI | GGTGA | 1 cut(s) | 356 |
| Hpy166II | GTNNAC | 2 cut(s) | 64, 203 |
| Hpy188III | TCNNGA | 4 cut(s) | 38, 49, 77, 238 |
| Hpy8I | GTNNAC | 2 cut(s) | 64, 203 |
| HpyAV | CCTTC | 4 cut(s) | 22, 46, 138, 160 |
| HpyCH4IV | ACGT | 2 cut(s) | 44, 199 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 58, 83, 129, 196, 219, 296, 329 |
| HpySE526I | ACGT | 2 cut(s) | 44, 199 |
| Hsp92II | CATG | 3 cut(s) | 278, 283, 313 |
| Kpn2I | TCCGGA | 1 cut(s) | 48 |
| LpnPI | CCDG | 3 cut(s) | 62, 77, 241 |
| LweI | GCATC | 3 cut(s) | 70, 305, 338 |
| MaeII | ACGT | 2 cut(s) | 44, 199 |
| MboII | GAAGA | 2 cut(s) | 29, 153 |
| MluCI | AATT | 3 cut(s) | 110, 337, 347 |
| MnlI | CCTC | 2 cut(s) | 125, 151 |
| Mph1103I | ATGCAT | 1 cut(s) | 331 |
| MroI | TCCGGA | 1 cut(s) | 48 |
| MseI | TTAA | 1 cut(s) | 350 |
| MspA1I | CMGCKG | 1 cut(s) | 188 |
| MspI | CCGG | 2 cut(s) | 49, 228 |
| MspR9I | CCNGG | 1 cut(s) | 228 |
| NciI | CCSGG | 1 cut(s) | 228 |
| NlaIII | CATG | 3 cut(s) | 278, 283, 313 |
| NlaIV | GGNNCC | 1 cut(s) | 96 |
| NsiI | ATGCAT | 1 cut(s) | 331 |
| NspI | RCATGY | 1 cut(s) | 278 |
| PfeI | GAWTC | 1 cut(s) | 241 |
| PpuMI | RGGWCCY | 1 cut(s) | 121 |
| Psp1406I | AACGTT | 1 cut(s) | 44 |
| Psp5II | RGGWCCY | 1 cut(s) | 121 |
| PspN4I | GGNNCC | 1 cut(s) | 96 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| PspPPI | RGGWCCY | 1 cut(s) | 121 |
| SaqAI | TTAA | 1 cut(s) | 350 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| ScrFI | CCNGG | 1 cut(s) | 228 |
| SetI | ASST | 8 cut(s) | 47, 57, 96, 126, 162, 171, 202, 295 |
| SfaNI | GCATC | 3 cut(s) | 70, 305, 338 |
| SinI | GGWCC | 1 cut(s) | 121 |
| SmlI | CTYRAG | 1 cut(s) | 116 |
| SmoI | CTYRAG | 1 cut(s) | 116 |
| Sse9I | AATT | 3 cut(s) | 110, 337, 347 |
| SsiI | CCGC | 2 cut(s) | 71, 186 |
| StyD4I | CCNGG | 1 cut(s) | 226 |
| TaiI | ACGT | 2 cut(s) | 47, 202 |
| TaqI | TCGA | 1 cut(s) | 78 |
| TasI | AATT | 3 cut(s) | 110, 337, 347 |
| TfiI | GAWTC | 1 cut(s) | 241 |
| Tru1I | TTAA | 1 cut(s) | 350 |
| Tru9I | TTAA | 1 cut(s) | 350 |
| TspDTI | ATGAA | 1 cut(s) | 350 |
| VpaK11BI | GGWCC | 1 cut(s) | 121 |
| XapI | RAATTY | 2 cut(s) | 110, 337 |
| XceI | RCATGY | 1 cut(s) | 278 |
| Zsp2I | ATGCAT | 1 cut(s) | 331 |