transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1194 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 748, 2173 |
| AccBSI | CCGCTC | 1 cut(s) | 1282 |
| AciI | CCGC | 4 cut(s) | 302, 963, 1106, 1280 |
| AclWI | GGATC | 5 cut(s) | 637, 1427, 2100, 3719, 3726 |
| AcoI | YGGCCR | 2 cut(s) | 1767, 1938 |
| AcsI | RAATTY | 4 cut(s) | 447, 1156, 1162, 2428 |
| AdeI | CACNNNGTG | 1 cut(s) | 421 |
| AfaI | GTAC | 4 cut(s) | 145, 1313, 1339, 1374 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 229, 748, 950, 1086, 2085, 2173 |
| AflIII | ACRYGT | 2 cut(s) | 1375, 3716 |
| AjiI | CACGTC | 2 cut(s) | 1270, 1765 |
| AjnI | CCWGG | 3 cut(s) | 666, 747, 1435 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1890, 1922, 2020, 2052 |
| AluBI | AGCT | 8 cut(s) | 51, 311, 1414, 1558, 1642, 1748, 3576, 3693 |
| AluI | AGCT | 8 cut(s) | 51, 311, 1414, 1558, 1642, 1748, 3576, 3693 |
| Alw21I | GWGCWC | 4 cut(s) | 539, 1269, 2133, 3599 |
| Alw26I | GTCTC | 5 cut(s) | 489, 1244, 1396, 2016, 2634 |
| Alw44I | GTGCAC | 3 cut(s) | 535, 1265, 3595 |
| AlwI | GGATC | 5 cut(s) | 637, 1427, 2100, 3719, 3726 |
| Ama87I | CYCGRG | 1 cut(s) | 1609 |
| AoxI | GGCC | 4 cut(s) | 622, 1767, 1938, 3330 |
| ApaLI | GTGCAC | 3 cut(s) | 535, 1265, 3595 |
| ApeKI | GCWGC | 8 cut(s) | 1051, 1108, 1414, 1639, 1916, 1947, 1973, 3750 |
| ApoI | RAATTY | 4 cut(s) | 447, 1156, 1162, 2428 |
| AseI | ATTAAT | 2 cut(s) | 1512, 2673 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 237 |
| AspA2I | CCTAGG | 2 cut(s) | 634, 2227 |
| AspS9I | GGNCC | 1 cut(s) | 3783 |
| AsuHPI | GGTGA | 3 cut(s) | 683, 967, 2370 |
| AvaI | CYCGRG | 1 cut(s) | 1609 |
| AvaII | GGWCC | 1 cut(s) | 3783 |
| AvrII | CCTAGG | 2 cut(s) | 634, 2227 |
| BaeGI | GKGCMC | 5 cut(s) | 539, 1194, 1269, 3599, 3801 |
| BalI | TGGCCA | 1 cut(s) | 1769 |
| BbsI | GAAGAC | 2 cut(s) | 6, 2229 |
| Bbv12I | GWGCWC | 4 cut(s) | 539, 1269, 2133, 3599 |
| BbvI | GCAGC | 8 cut(s) | 1038, 1120, 1401, 1651, 1903, 1959, 1960, 3762 |
| BceAI | ACGGC | 7 cut(s) | 1098, 1114, 2156, 3223, 3311, 3577, 3641 |
| BciT130I | CCWGG | 3 cut(s) | 668, 749, 1437 |
| BclI | TGATCA | 1 cut(s) | 790 |
| BcoDI | GTCTC | 5 cut(s) | 489, 1244, 1396, 2016, 2634 |
| BfmI | CTRYAG | 1 cut(s) | 1662 |
| BfuAI | ACCTGC | 1 cut(s) | 1194 |
| BisI | GCNGC | 9 cut(s) | 1052, 1106, 1109, 1415, 1640, 1917, 1948, 1974, 3751 |
| BlnI | CCTAGG | 2 cut(s) | 634, 2227 |
| BlsI | GCNGC | 9 cut(s) | 1053, 1107, 1110, 1416, 1641, 1918, 1949, 1975, 3752 |
| Bme1390I | CCNGG | 3 cut(s) | 668, 749, 1437 |
| Bme18I | GGWCC | 1 cut(s) | 3783 |
| BmeT110I | CYCGRG | 1 cut(s) | 1609 |
| BmgBI | CACGTC | 2 cut(s) | 1270, 1765 |
| BmgT120I | GGNCC | 1 cut(s) | 3783 |
| BmiI | GGNNCC | 5 cut(s) | 1003, 1777, 2069, 3043, 3785 |
| BmrFI | CCNGG | 3 cut(s) | 668, 749, 1437 |
| BpiI | GAAGAC | 2 cut(s) | 6, 2229 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 690, 722, 1376, 1408 |
| BpmI | CTGGAG | 1 cut(s) | 1268 |
| Bpu10I | CCTNAGC | 3 cut(s) | 110, 966, 3251 |
| BpuEI | CTTGAG | 2 cut(s) | 1000, 2665 |
| Bsa29I | ATCGAT | 1 cut(s) | 1594 |
| BsaBI | GATNNNNATC | 2 cut(s) | 595, 2097 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 300, 330, 3164, 3194 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 229, 748, 950, 1086, 2085, 2173 |
| Bse1I | ACTGG | 1 cut(s) | 3614 |
| Bse3DI | GCAATG | 7 cut(s) | 569, 1404, 3196, 3205, 3321, 3481, 3838 |
| Bse8I | GATNNNNATC | 2 cut(s) | 595, 2097 |
| BseBI | CCWGG | 3 cut(s) | 668, 749, 1437 |
| BseCI | ATCGAT | 1 cut(s) | 1594 |
| BseJI | GATNNNNATC | 2 cut(s) | 595, 2097 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 229, 748, 950, 1086, 2085, 2173 |
| BseMI | GCAATG | 7 cut(s) | 569, 1404, 3196, 3205, 3321, 3481, 3838 |
| BseMII | CTCAG | 4 cut(s) | 500, 549, 2627, 3686 |
| BseNI | ACTGG | 1 cut(s) | 3614 |
| BseRI | GAGGAG | 3 cut(s) | 1241, 1629, 2153 |
| BseSI | GKGCMC | 5 cut(s) | 539, 1194, 1269, 3599, 3801 |
| BseXI | GCAGC | 8 cut(s) | 1038, 1120, 1401, 1651, 1903, 1959, 1960, 3762 |
| BsgI | GTGCAG | 1 cut(s) | 3741 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1594 |
| BshFI | GGCC | 4 cut(s) | 624, 1769, 1940, 3332 |
| BshVI | ATCGAT | 1 cut(s) | 1594 |
| BsiEI | CGRYCG | 1 cut(s) | 1594 |
| BsiHKAI | GWGCWC | 4 cut(s) | 539, 1269, 2133, 3599 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1609 |
| BslFI | GGGAC | 3 cut(s) | 413, 1117, 3769 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 229, 748, 950, 1086, 2085, 2173 |
| BsmAI | GTCTC | 5 cut(s) | 489, 1244, 1396, 2016, 2634 |
| BsmBI | CGTCTC | 1 cut(s) | 1244 |
| BsmFI | GGGAC | 3 cut(s) | 413, 1117, 3769 |
| BsmI | GAATGC | 4 cut(s) | 373, 834, 3342, 3492 |
| BsnI | GGCC | 4 cut(s) | 624, 1769, 1940, 3332 |
| BsoBI | CYCGRG | 1 cut(s) | 1609 |
| Bsp1286I | GDGCHC | 6 cut(s) | 539, 1194, 1269, 2133, 3599, 3801 |
| Bsp1407I | TGTACA | 1 cut(s) | 1337 |
| Bsp143I | GATC | 9 cut(s) | 642, 790, 1432, 1591, 1595, 2092, 3114, 3724, 3731 |
| Bsp19I | CCATGG | 1 cut(s) | 407 |
| BspACI | CCGC | 4 cut(s) | 302, 963, 1106, 1280 |
| BspANI | GGCC | 4 cut(s) | 624, 1769, 1940, 3332 |
| BspCNI | CTCAG | 4 cut(s) | 499, 550, 2628, 3685 |
| BspDI | ATCGAT | 1 cut(s) | 1594 |
| BspLI | GGNNCC | 5 cut(s) | 1003, 1777, 2069, 3043, 3785 |
| BspMI | ACCTGC | 1 cut(s) | 1194 |
| BspPI | GGATC | 5 cut(s) | 637, 1427, 2100, 3719, 3726 |
| BspQI | GCTCTTC | 1 cut(s) | 1548 |
| BsrBI | CCGCTC | 1 cut(s) | 1282 |
| BsrDI | GCAATG | 7 cut(s) | 569, 1404, 3196, 3205, 3321, 3481, 3838 |
| BsrGI | TGTACA | 1 cut(s) | 1337 |
| BsrI | ACTGG | 1 cut(s) | 3614 |
| BssMI | GATC | 9 cut(s) | 642, 790, 1432, 1591, 1595, 2092, 3114, 3724, 3731 |
| BssT1I | CCWWGG | 8 cut(s) | 407, 634, 760, 892, 1143, 1770, 2227, 3787 |
| Bst2UI | CCWGG | 3 cut(s) | 668, 749, 1437 |
| Bst4CI | ACNGT | 3 cut(s) | 1970, 2521, 2966 |
| Bst6I | CTCTTC | 3 cut(s) | 228, 1548, 3928 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3021, 3207 |
| BstAUI | TGTACA | 1 cut(s) | 1337 |
| BstC8I | GCNNGC | 2 cut(s) | 2188, 3639 |
| BstDSI | CCRYGG | 4 cut(s) | 407, 1080, 2172, 3327 |
| BstKTI | GATC | 9 cut(s) | 645, 793, 1435, 1594, 1598, 2095, 3117, 3727, 3734 |
| BstMAI | GTCTC | 5 cut(s) | 489, 1244, 1396, 2016, 2634 |
| BstMBI | GATC | 9 cut(s) | 642, 790, 1432, 1591, 1595, 2092, 3114, 3724, 3731 |
| BstMCI | CGRYCG | 1 cut(s) | 1594 |
| BstNI | CCWGG | 3 cut(s) | 668, 749, 1437 |
| BstSCI | CCNGG | 3 cut(s) | 666, 747, 1435 |
| BstSFI | CTRYAG | 1 cut(s) | 1662 |
| BstSLI | GKGCMC | 5 cut(s) | 539, 1194, 1269, 3599, 3801 |
| BstV1I | GCAGC | 8 cut(s) | 1038, 1120, 1401, 1651, 1903, 1959, 1960, 3762 |
| BstV2I | GAAGAC | 2 cut(s) | 6, 2229 |
| BstX2I | RGATCY | 3 cut(s) | 1432, 3724, 3731 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 610, 850, 3099 |
| BstYI | RGATCY | 3 cut(s) | 1432, 3724, 3731 |
| Bsu15I | ATCGAT | 1 cut(s) | 1594 |
| BsuRI | GGCC | 4 cut(s) | 624, 1769, 1940, 3332 |
| BsuTUI | ATCGAT | 1 cut(s) | 1594 |
| BtgI | CCRYGG | 4 cut(s) | 407, 1080, 2172, 3327 |
| BtgZI | GCGATG | 1 cut(s) | 1695 |
| BtrI | CACGTC | 2 cut(s) | 1270, 1765 |
| BtsI | GCAGTG | 1 cut(s) | 700 |
| BtsIMutI | CAGTG | 2 cut(s) | 700, 1975 |
| BveI | ACCTGC | 1 cut(s) | 1194 |
| Cac8I | GCNNGC | 2 cut(s) | 2188, 3639 |
| Cfr13I | GGNCC | 1 cut(s) | 3783 |
| ClaI | ATCGAT | 1 cut(s) | 1594 |
| Csp6I | GTAC | 4 cut(s) | 144, 1312, 1338, 1373 |
| CviQI | GTAC | 4 cut(s) | 144, 1312, 1338, 1373 |
| DpnI | GATC | 9 cut(s) | 644, 792, 1434, 1593, 1597, 2094, 3116, 3726, 3733 |
| DpnII | GATC | 9 cut(s) | 642, 790, 1432, 1591, 1595, 2092, 3114, 3724, 3731 |
| DraI | TTTAAA | 1 cut(s) | 1816 |
| DraIII | CACNNNGTG | 1 cut(s) | 421 |
| EaeI | YGGCCR | 2 cut(s) | 1767, 1938 |
| Eam1104I | CTCTTC | 3 cut(s) | 228, 1548, 3928 |
| EarI | CTCTTC | 3 cut(s) | 228, 1548, 3928 |
| Eco130I | CCWWGG | 8 cut(s) | 407, 634, 760, 892, 1143, 1770, 2227, 3787 |
| Eco47I | GGWCC | 1 cut(s) | 3783 |
| Eco88I | CYCGRG | 1 cut(s) | 1609 |
| EcoRII | CCWGG | 3 cut(s) | 666, 747, 1435 |
| EcoT14I | CCWWGG | 8 cut(s) | 407, 634, 760, 892, 1143, 1770, 2227, 3787 |
| ErhI | CCWWGG | 8 cut(s) | 407, 634, 760, 892, 1143, 1770, 2227, 3787 |
| Esp3I | CGTCTC | 1 cut(s) | 1244 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 903, 935, 1763, 1795, 2179, 2211, 3019, 3051 |
| FaqI | GGGAC | 3 cut(s) | 413, 1117, 3769 |
| FauI | CCCGC | 2 cut(s) | 295, 1287 |
| FauNDI | CATATG | 5 cut(s) | 117, 648, 2792, 3080, 3514 |
| FbaI | TGATCA | 1 cut(s) | 790 |
| Fnu4HI | GCNGC | 9 cut(s) | 1052, 1106, 1109, 1415, 1640, 1917, 1948, 1974, 3751 |
| Fsp4HI | GCNGC | 9 cut(s) | 1052, 1106, 1109, 1415, 1640, 1917, 1948, 1974, 3751 |
| GluI | GCNGC | 9 cut(s) | 1052, 1106, 1109, 1415, 1640, 1917, 1948, 1974, 3751 |
| GsuI | CTGGAG | 1 cut(s) | 1268 |
| HaeIII | GGCC | 4 cut(s) | 624, 1769, 1940, 3332 |
| HincII | GTYRAC | 2 cut(s) | 1966, 3619 |
| HindII | GTYRAC | 2 cut(s) | 1966, 3619 |
| HphI | GGTGA | 3 cut(s) | 683, 967, 2370 |
| Hpy166II | GTNNAC | 8 cut(s) | 537, 739, 1267, 1966, 2176, 2363, 3597, 3619 |
| Hpy188I | TCNGA | 9 cut(s) | 68, 445, 559, 886, 2425, 3279, 3469, 3675, 3741 |
| Hpy188III | TCNNGA | 6 cut(s) | 905, 1247, 1306, 1358, 1550, 3407 |
| Hpy8I | GTNNAC | 8 cut(s) | 537, 739, 1267, 1966, 2176, 2363, 3597, 3619 |
| Hpy99I | CGWCG | 1 cut(s) | 3933 |
| HpyCH4III | ACNGT | 3 cut(s) | 1970, 2521, 2966 |
| HpyCH4IV | ACGT | 6 cut(s) | 187, 1253, 1269, 1764, 2178, 2365 |
| HpySE526I | ACGT | 6 cut(s) | 187, 1253, 1269, 1764, 2178, 2365 |
| Ksp22I | TGATCA | 1 cut(s) | 790 |
| Kzo9I | GATC | 9 cut(s) | 642, 790, 1432, 1591, 1595, 2092, 3114, 3724, 3731 |
| LguI | GCTCTTC | 1 cut(s) | 1548 |
| Lsp1109I | GCAGC | 8 cut(s) | 1038, 1120, 1401, 1651, 1903, 1959, 1960, 3762 |
| MaeII | ACGT | 6 cut(s) | 187, 1253, 1269, 1764, 2178, 2365 |
| MaeIII | GTNAC | 3 cut(s) | 2531, 2593, 3924 |
| MalI | GATC | 9 cut(s) | 644, 792, 1434, 1593, 1597, 2094, 3116, 3726, 3733 |
| MbiI | CCGCTC | 1 cut(s) | 1282 |
| MboI | GATC | 9 cut(s) | 642, 790, 1432, 1591, 1595, 2092, 3114, 3724, 3731 |
| MfeI | CAATTG | 3 cut(s) | 273, 458, 572 |
| MflI | RGATCY | 3 cut(s) | 1432, 3724, 3731 |
| MhlI | GDGCHC | 6 cut(s) | 539, 1194, 1269, 2133, 3599, 3801 |
| MlsI | TGGCCA | 1 cut(s) | 1769 |
| MluNI | TGGCCA | 1 cut(s) | 1769 |
| MlyI | GAGTC | 3 cut(s) | 395, 2315, 2496 |
| MmeI | TCCRAC | 3 cut(s) | 979, 2262, 3423 |
| Mox20I | TGGCCA | 1 cut(s) | 1769 |
| MroXI | GAANNNNTTC | 1 cut(s) | 237 |
| MscI | TGGCCA | 1 cut(s) | 1769 |
| MslI | CAYNNNNRTG | 6 cut(s) | 173, 1380, 1423, 2054, 3326, 3347 |
| Msp20I | TGGCCA | 1 cut(s) | 1769 |
| MspR9I | CCNGG | 3 cut(s) | 668, 749, 1437 |
| MunI | CAATTG | 3 cut(s) | 273, 458, 572 |
| Mva1269I | GAATGC | 4 cut(s) | 373, 834, 3342, 3492 |
| MvaI | CCWGG | 3 cut(s) | 668, 749, 1437 |
| NcoI | CCATGG | 1 cut(s) | 407 |
| NdeI | CATATG | 5 cut(s) | 117, 648, 2792, 3080, 3514 |
| NdeII | GATC | 9 cut(s) | 642, 790, 1432, 1591, 1595, 2092, 3114, 3724, 3731 |
| NlaIV | GGNNCC | 5 cut(s) | 1003, 1777, 2069, 3043, 3785 |
| NmeAIII | GCCGAG | 1 cut(s) | 278 |
| PaeI | GCATGC | 1 cut(s) | 3641 |
| PasI | CCCWGGG | 1 cut(s) | 748 |
| PciI | ACATGT | 2 cut(s) | 1375, 3716 |
| PciSI | GCTCTTC | 1 cut(s) | 1548 |
| PctI | GAATGC | 4 cut(s) | 373, 834, 3342, 3492 |
| PdmI | GAANNNNTTC | 1 cut(s) | 237 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 748, 2173 |
| PkrI | GCNGC | 9 cut(s) | 1053, 1107, 1110, 1416, 1641, 1918, 1949, 1975, 3752 |
| Ple19I | CGATCG | 1 cut(s) | 1594 |
| PleI | GAGTC | 3 cut(s) | 395, 2314, 2495 |
| PpsI | GAGTC | 3 cut(s) | 395, 2314, 2495 |
| PscI | ACATGT | 2 cut(s) | 1375, 3716 |
| PshBI | ATTAAT | 2 cut(s) | 1512, 2673 |
| Psp6I | CCWGG | 3 cut(s) | 666, 747, 1435 |
| PspGI | CCWGG | 3 cut(s) | 666, 747, 1435 |
| PspN4I | GGNNCC | 5 cut(s) | 1003, 1777, 2069, 3043, 3785 |
| PspPI | GGNCC | 1 cut(s) | 3783 |
| PsuI | RGATCY | 3 cut(s) | 1432, 3724, 3731 |
| PvuI | CGATCG | 1 cut(s) | 1594 |
| RsaI | GTAC | 4 cut(s) | 145, 1313, 1339, 1374 |
| RsaNI | GTAC | 4 cut(s) | 144, 1312, 1338, 1373 |
| RseI | CAYNNNNRTG | 6 cut(s) | 173, 1380, 1423, 2054, 3326, 3347 |
| SapI | GCTCTTC | 1 cut(s) | 1548 |
| SatI | GCNGC | 9 cut(s) | 1052, 1106, 1109, 1415, 1640, 1917, 1948, 1974, 3751 |
| Sau3AI | GATC | 9 cut(s) | 642, 790, 1432, 1591, 1595, 2092, 3114, 3724, 3731 |
| Sau96I | GGNCC | 1 cut(s) | 3783 |
| SchI | GAGTC | 3 cut(s) | 395, 2315, 2496 |
| ScrFI | CCNGG | 3 cut(s) | 668, 749, 1437 |
| SduI | GDGCHC | 6 cut(s) | 539, 1194, 1269, 2133, 3599, 3801 |
| SfcI | CTRYAG | 1 cut(s) | 1662 |
| SinI | GGWCC | 1 cut(s) | 3783 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 173, 1380, 1423, 2054, 3326, 3347 |
| SmlI | CTYRAG | 2 cut(s) | 979, 2644 |
| SmoI | CTYRAG | 2 cut(s) | 979, 2644 |
| SphI | GCATGC | 1 cut(s) | 3641 |
| SsiI | CCGC | 4 cut(s) | 302, 963, 1106, 1280 |
| StyD4I | CCNGG | 3 cut(s) | 666, 747, 1435 |
| StyI | CCWWGG | 8 cut(s) | 407, 634, 760, 892, 1143, 1770, 2227, 3787 |
| TaaI | ACNGT | 3 cut(s) | 1970, 2521, 2966 |
| TaiI | ACGT | 6 cut(s) | 190, 1256, 1272, 1767, 2181, 2368 |
| TaqI | TCGA | 6 cut(s) | 358, 708, 904, 1594, 1896, 2445 |
| TatI | WGTACW | 1 cut(s) | 1337 |
| TauI | GCSGC | 1 cut(s) | 1108 |
| TscAI | CASTG | 2 cut(s) | 700, 1975 |
| TseI | GCWGC | 8 cut(s) | 1051, 1108, 1414, 1639, 1916, 1947, 1973, 3750 |
| TspGWI | ACGGA | 1 cut(s) | 1366 |
| TspRI | CASTG | 2 cut(s) | 700, 1975 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 748, 2173 |
| VneI | GTGCAC | 3 cut(s) | 535, 1265, 3595 |
| VpaK11BI | GGWCC | 1 cut(s) | 3783 |
| VspI | ATTAAT | 2 cut(s) | 1512, 2673 |
| XapI | RAATTY | 4 cut(s) | 447, 1156, 1162, 2428 |
| XbaI | TCTAGA | 1 cut(s) | 1549 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 692, 1762 |
| XmaJI | CCTAGG | 2 cut(s) | 634, 2227 |
| XmnI | GAANNNNTTC | 1 cut(s) | 237 |