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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 77, 110, 300 |
| AclWI | GGATC | 1 cut(s) | 410 |
| AcoI | YGGCCR | 2 cut(s) | 111, 264 |
| AcsI | RAATTY | 1 cut(s) | 628 |
| AfaI | GTAC | 1 cut(s) | 26 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 497 |
| AflII | CTTAAG | 1 cut(s) | 614 |
| AflIII | ACRYGT | 1 cut(s) | 429 |
| AgsI | TTSAA | 4 cut(s) | 142, 353, 392, 466 |
| AjnI | CCWGG | 1 cut(s) | 439 |
| Alw26I | GTCTC | 3 cut(s) | 261, 444, 639 |
| AlwI | GGATC | 1 cut(s) | 410 |
| Ama87I | CYCGRG | 1 cut(s) | 520 |
| AoxI | GGCC | 4 cut(s) | 111, 166, 264, 394 |
| ApeKI | GCWGC | 1 cut(s) | 187 |
| ApoI | RAATTY | 1 cut(s) | 628 |
| AspLEI | GCGC | 1 cut(s) | 374 |
| AspS9I | GGNCC | 3 cut(s) | 176, 287, 688 |
| AsuC2I | CCSGG | 2 cut(s) | 521, 522 |
| AsuII | TTCGAA | 1 cut(s) | 425 |
| AvaI | CYCGRG | 1 cut(s) | 520 |
| AvaII | GGWCC | 3 cut(s) | 176, 287, 688 |
| BaeGI | GKGCMC | 1 cut(s) | 341 |
| BanII | GRGCYC | 1 cut(s) | 480 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 229, 261 |
| BbvI | GCAGC | 1 cut(s) | 199 |
| BccI | CCATC | 2 cut(s) | 256, 357 |
| BceAI | ACGGC | 1 cut(s) | 200 |
| BciT130I | CCWGG | 1 cut(s) | 441 |
| BcnI | CCSGG | 2 cut(s) | 521, 522 |
| BcoDI | GTCTC | 3 cut(s) | 261, 444, 639 |
| BfmI | CTRYAG | 1 cut(s) | 20 |
| BfrI | CTTAAG | 1 cut(s) | 614 |
| BisI | GCNGC | 2 cut(s) | 111, 188 |
| BlsI | GCNGC | 2 cut(s) | 112, 189 |
| BmcAI | AGTACT | 1 cut(s) | 26 |
| Bme1390I | CCNGG | 3 cut(s) | 441, 521, 522 |
| Bme18I | GGWCC | 3 cut(s) | 176, 287, 688 |
| BmeT110I | CYCGRG | 1 cut(s) | 520 |
| BmgT120I | GGNCC | 3 cut(s) | 176, 287, 688 |
| BmiI | GGNNCC | 2 cut(s) | 178, 477 |
| BmrFI | CCNGG | 3 cut(s) | 441, 521, 522 |
| BmsI | GCATC | 2 cut(s) | 27, 58 |
| Bpu14I | TTCGAA | 1 cut(s) | 425 |
| BpuMI | CCSGG | 2 cut(s) | 521, 522 |
| BsaAI | YACGTR | 1 cut(s) | 432 |
| BsaI | GGTCTC | 1 cut(s) | 444 |
| BsaJI | CCNNGG | 8 cut(s) | 72, 105, 114, 182, 316, 407, 519, 520 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 75, 105 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 497 |
| BseBI | CCWGG | 1 cut(s) | 441 |
| BseDI | CCNNGG | 8 cut(s) | 72, 105, 114, 182, 316, 407, 519, 520 |
| BseGI | GGATG | 1 cut(s) | 368 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 497 |
| BseMII | CTCAG | 3 cut(s) | 272, 321, 650 |
| BseRI | GAGGAG | 1 cut(s) | 23 |
| BseSI | GKGCMC | 1 cut(s) | 341 |
| BseXI | GCAGC | 1 cut(s) | 199 |
| BshFI | GGCC | 4 cut(s) | 113, 168, 266, 396 |
| BsiHKCI | CYCGRG | 1 cut(s) | 520 |
| BsiSI | CCGG | 1 cut(s) | 521 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 497 |
| BsmAI | GTCTC | 3 cut(s) | 261, 444, 639 |
| BsnI | GGCC | 4 cut(s) | 113, 168, 266, 396 |
| Bso31I | GGTCTC | 1 cut(s) | 444 |
| BsoBI | CYCGRG | 1 cut(s) | 520 |
| Bsp119I | TTCGAA | 1 cut(s) | 425 |
| Bsp1286I | GDGCHC | 2 cut(s) | 341, 480 |
| Bsp143I | GATC | 1 cut(s) | 415 |
| Bsp19I | CCATGG | 1 cut(s) | 105 |
| BspACI | CCGC | 3 cut(s) | 77, 110, 300 |
| BspANI | GGCC | 4 cut(s) | 113, 168, 266, 396 |
| BspCNI | CTCAG | 3 cut(s) | 271, 322, 649 |
| BspHI | TCATGA | 1 cut(s) | 196 |
| BspLI | GGNNCC | 2 cut(s) | 178, 477 |
| BspPI | GGATC | 1 cut(s) | 410 |
| BspT104I | TTCGAA | 1 cut(s) | 425 |
| BspTI | CTTAAG | 1 cut(s) | 614 |
| BspTNI | GGTCTC | 1 cut(s) | 444 |
| BssECI | CCNNGG | 8 cut(s) | 72, 105, 114, 182, 316, 407, 519, 520 |
| BssMI | GATC | 1 cut(s) | 415 |
| BssT1I | CCWWGG | 3 cut(s) | 105, 114, 316 |
| Bst2UI | CCWGG | 1 cut(s) | 441 |
| Bst4CI | ACNGT | 1 cut(s) | 24 |
| BstAFI | CTTAAG | 1 cut(s) | 614 |
| BstBAI | YACGTR | 1 cut(s) | 432 |
| BstBI | TTCGAA | 1 cut(s) | 425 |
| BstDEI | CTNAG | 3 cut(s) | 258, 330, 636 |
| BstDSI | CCRYGG | 2 cut(s) | 105, 182 |
| BstF5I | GGATG | 1 cut(s) | 368 |
| BstHHI | GCGC | 1 cut(s) | 374 |
| BstKTI | GATC | 1 cut(s) | 418 |
| BstMAI | GTCTC | 3 cut(s) | 261, 444, 639 |
| BstMBI | GATC | 1 cut(s) | 415 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 83, 134, 143 |
| BstNI | CCWGG | 1 cut(s) | 441 |
| BstNSI | RCATGY | 2 cut(s) | 326, 557 |
| BstSCI | CCNGG | 3 cut(s) | 439, 519, 520 |
| BstSFI | CTRYAG | 1 cut(s) | 20 |
| BstSLI | GKGCMC | 1 cut(s) | 341 |
| BstV1I | GCAGC | 1 cut(s) | 199 |
| BsuRI | GGCC | 4 cut(s) | 113, 168, 266, 396 |
| BtgI | CCRYGG | 2 cut(s) | 105, 182 |
| BtsCI | GGATG | 1 cut(s) | 368 |
| CciI | TCATGA | 1 cut(s) | 196 |
| CfoI | GCGC | 1 cut(s) | 374 |
| Cfr13I | GGNCC | 3 cut(s) | 176, 287, 688 |
| Cfr9I | CCCGGG | 1 cut(s) | 520 |
| Csp6I | GTAC | 1 cut(s) | 25 |
| CviAII | CATG | 5 cut(s) | 106, 197, 323, 554, 664 |
| CviQI | GTAC | 1 cut(s) | 25 |
| DdeI | CTNAG | 3 cut(s) | 258, 330, 636 |
| DpnI | GATC | 1 cut(s) | 417 |
| DpnII | GATC | 1 cut(s) | 415 |
| EaeI | YGGCCR | 2 cut(s) | 111, 264 |
| Eco130I | CCWWGG | 3 cut(s) | 105, 114, 316 |
| Eco24I | GRGCYC | 1 cut(s) | 480 |
| Eco31I | GGTCTC | 1 cut(s) | 444 |
| Eco47I | GGWCC | 3 cut(s) | 176, 287, 688 |
| Eco88I | CYCGRG | 1 cut(s) | 520 |
| EcoO109I | RGGNCCY | 1 cut(s) | 176 |
| EcoRII | CCWGG | 1 cut(s) | 439 |
| EcoT14I | CCWWGG | 3 cut(s) | 105, 114, 316 |
| EcoT38I | GRGCYC | 1 cut(s) | 480 |
| ErhI | CCWWGG | 3 cut(s) | 105, 114, 316 |
| FaeI | CATG | 5 cut(s) | 109, 200, 326, 557, 667 |
| FatI | CATG | 5 cut(s) | 105, 196, 322, 553, 663 |
| FauI | CCCGC | 1 cut(s) | 70 |
| Fnu4HI | GCNGC | 2 cut(s) | 111, 188 |
| FokI | GGATG | 1 cut(s) | 375 |
| FriOI | GRGCYC | 1 cut(s) | 480 |
| Fsp4HI | GCNGC | 2 cut(s) | 111, 188 |
| GlaI | GCGC | 1 cut(s) | 373 |
| GluI | GCNGC | 2 cut(s) | 111, 188 |
| HaeIII | GGCC | 4 cut(s) | 113, 168, 266, 396 |
| HapII | CCGG | 1 cut(s) | 521 |
| HhaI | GCGC | 1 cut(s) | 374 |
| Hin1II | CATG | 5 cut(s) | 109, 200, 326, 557, 667 |
| Hin6I | GCGC | 1 cut(s) | 372 |
| HinP1I | GCGC | 1 cut(s) | 372 |
| HpaII | CCGG | 1 cut(s) | 521 |
| Hpy166II | GTNNAC | 2 cut(s) | 94, 688 |
| Hpy188I | TCNGA | 2 cut(s) | 261, 331 |
| Hpy188III | TCNNGA | 3 cut(s) | 121, 197, 740 |
| Hpy8I | GTNNAC | 2 cut(s) | 94, 688 |
| HpyAV | CCTTC | 2 cut(s) | 152, 263 |
| HpyCH4III | ACNGT | 1 cut(s) | 24 |
| HpyCH4IV | ACGT | 2 cut(s) | 55, 431 |
| HpyCH4V | TGCA | 5 cut(s) | 283, 380, 557, 667, 719 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 83, 134, 143 |
| HpyF3I | CTNAG | 3 cut(s) | 258, 330, 636 |
| HpySE526I | ACGT | 2 cut(s) | 55, 431 |
| Hsp92II | CATG | 5 cut(s) | 109, 200, 326, 557, 667 |
| HspAI | GCGC | 1 cut(s) | 372 |
| Kzo9I | GATC | 1 cut(s) | 415 |
| LmnI | GCTCC | 3 cut(s) | 45, 83, 475 |
| LpnPI | CCDG | 5 cut(s) | 426, 453, 534, 570, 623 |
| Lsp1109I | GCAGC | 1 cut(s) | 199 |
| LweI | GCATC | 2 cut(s) | 27, 58 |
| MaeII | ACGT | 2 cut(s) | 55, 431 |
| MaeIII | GTNAC | 3 cut(s) | 12, 587, 618 |
| MalI | GATC | 1 cut(s) | 417 |
| MboI | GATC | 1 cut(s) | 415 |
| MfeI | CAATTG | 3 cut(s) | 291, 381, 692 |
| MhlI | GDGCHC | 2 cut(s) | 341, 480 |
| MluCI | AATT | 6 cut(s) | 230, 291, 381, 628, 692, 705 |
| MmeI | TCCRAC | 1 cut(s) | 425 |
| MnlI | CCTC | 8 cut(s) | 82, 167, 193, 270, 402, 465, 494, 570 |
| MseI | TTAA | 1 cut(s) | 615 |
| MspCI | CTTAAG | 1 cut(s) | 614 |
| MspI | CCGG | 1 cut(s) | 521 |
| MspR9I | CCNGG | 3 cut(s) | 441, 521, 522 |
| MunI | CAATTG | 3 cut(s) | 291, 381, 692 |
| MvaI | CCWGG | 1 cut(s) | 441 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 83, 134, 143 |
| NciI | CCSGG | 2 cut(s) | 521, 522 |
| NcoI | CCATGG | 1 cut(s) | 105 |
| NdeII | GATC | 1 cut(s) | 415 |
| NlaIII | CATG | 5 cut(s) | 109, 200, 326, 557, 667 |
| NlaIV | GGNNCC | 2 cut(s) | 178, 477 |
| NmeAIII | GCCGAG | 1 cut(s) | 53 |
| NspI | RCATGY | 2 cut(s) | 326, 557 |
| NspV | TTCGAA | 1 cut(s) | 425 |
| PagI | TCATGA | 1 cut(s) | 196 |
| PkrI | GCNGC | 2 cut(s) | 112, 189 |
| Ppu21I | YACGTR | 1 cut(s) | 432 |
| PpuMI | RGGWCCY | 1 cut(s) | 176 |
| Psp5II | RGGWCCY | 1 cut(s) | 176 |
| Psp6I | CCWGG | 1 cut(s) | 439 |
| PspGI | CCWGG | 1 cut(s) | 439 |
| PspN4I | GGNNCC | 2 cut(s) | 178, 477 |
| PspPI | GGNCC | 3 cut(s) | 176, 287, 688 |
| PspPPI | RGGWCCY | 1 cut(s) | 176 |
| RsaI | GTAC | 1 cut(s) | 26 |
| RsaNI | GTAC | 1 cut(s) | 25 |
| SaqAI | TTAA | 1 cut(s) | 615 |
| SatI | GCNGC | 2 cut(s) | 111, 188 |
| Sau3AI | GATC | 1 cut(s) | 415 |
| Sau96I | GGNCC | 3 cut(s) | 176, 287, 688 |
| ScaI | AGTACT | 1 cut(s) | 26 |
| ScrFI | CCNGG | 3 cut(s) | 441, 521, 522 |
| SduI | GDGCHC | 2 cut(s) | 341, 480 |
| SetI | ASST | 8 cut(s) | 58, 120, 204, 238, 434, 445, 562, 589 |
| SfaNI | GCATC | 2 cut(s) | 27, 58 |
| SfcI | CTRYAG | 1 cut(s) | 20 |
| SfuI | TTCGAA | 1 cut(s) | 425 |
| SinI | GGWCC | 3 cut(s) | 176, 287, 688 |
| SmaI | CCCGGG | 1 cut(s) | 522 |
| SmlI | CTYRAG | 1 cut(s) | 614 |
| SmoI | CTYRAG | 1 cut(s) | 614 |
| Sse9I | AATT | 6 cut(s) | 230, 291, 381, 628, 692, 705 |
| SsiI | CCGC | 3 cut(s) | 77, 110, 300 |
| StyD4I | CCNGG | 3 cut(s) | 439, 519, 520 |
| StyI | CCWWGG | 3 cut(s) | 105, 114, 316 |
| TaaI | ACNGT | 1 cut(s) | 24 |
| TaiI | ACGT | 2 cut(s) | 58, 434 |
| TaqI | TCGA | 3 cut(s) | 51, 66, 425 |
| TasI | AATT | 6 cut(s) | 230, 291, 381, 628, 692, 705 |
| TatI | WGTACW | 1 cut(s) | 24 |
| TauI | GCSGC | 1 cut(s) | 113 |
| Tru1I | TTAA | 1 cut(s) | 615 |
| Tru9I | TTAA | 1 cut(s) | 615 |
| TseI | GCWGC | 1 cut(s) | 187 |
| TspDTI | ATGAA | 3 cut(s) | 17, 185, 212 |
| TspMI | CCCGGG | 1 cut(s) | 520 |
| Vha464I | CTTAAG | 1 cut(s) | 614 |
| VpaK11BI | GGWCC | 3 cut(s) | 176, 287, 688 |
| XapI | RAATTY | 1 cut(s) | 628 |
| XceI | RCATGY | 2 cut(s) | 326, 557 |
| XmaI | CCCGGG | 1 cut(s) | 520 |
| ZrmI | AGTACT | 1 cut(s) | 26 |