transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| rve | PF00665 | 190 - 263 | 9.1e-13 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 46 |
| Acc16I | TGCGCA | 1 cut(s) | 204 |
| Acc36I | ACCTGC | 1 cut(s) | 660 |
| AclWI | GGATC | 3 cut(s) | 431, 702, 715 |
| AcsI | RAATTY | 1 cut(s) | 440 |
| AcuI | CTGAAG | 1 cut(s) | 554 |
| AcyI | GRCGYC | 1 cut(s) | 43 |
| AfaI | GTAC | 1 cut(s) | 429 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 535 |
| AflII | CTTAAG | 1 cut(s) | 52 |
| AgsI | TTSAA | 5 cut(s) | 140, 307, 335, 376, 745 |
| AhlI | ACTAGT | 1 cut(s) | 794 |
| AjiI | CACGTC | 1 cut(s) | 448 |
| AluBI | AGCT | 4 cut(s) | 62, 371, 488, 559 |
| AluI | AGCT | 4 cut(s) | 62, 371, 488, 559 |
| Alw26I | GTCTC | 2 cut(s) | 346, 533 |
| AlwI | GGATC | 3 cut(s) | 431, 702, 715 |
| AoxI | GGCC | 1 cut(s) | 609 |
| ApeKI | GCWGC | 1 cut(s) | 556 |
| ApoI | RAATTY | 1 cut(s) | 440 |
| AspLEI | GCGC | 1 cut(s) | 205 |
| AsuHPI | GGTGA | 3 cut(s) | 125, 277, 776 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 225, 258 |
| BamHI | GGATCC | 1 cut(s) | 707 |
| BbvI | GCAGC | 1 cut(s) | 568 |
| BccI | CCATC | 3 cut(s) | 104, 414, 695 |
| BciVI | GTATCC | 2 cut(s) | 162, 226 |
| BcoDI | GTCTC | 2 cut(s) | 346, 533 |
| BcuI | ACTAGT | 1 cut(s) | 794 |
| BfaI | CTAG | 5 cut(s) | 63, 158, 615, 684, 795 |
| BfrI | CTTAAG | 1 cut(s) | 52 |
| BfuAI | ACCTGC | 1 cut(s) | 660 |
| BfuI | GTATCC | 2 cut(s) | 162, 226 |
| BisI | GCNGC | 1 cut(s) | 557 |
| BlsI | GCNGC | 1 cut(s) | 558 |
| BmgBI | CACGTC | 1 cut(s) | 448 |
| BmiI | GGNNCC | 1 cut(s) | 709 |
| BmsI | GCATC | 1 cut(s) | 365 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 10, 42 |
| BpuEI | CTTGAG | 2 cut(s) | 272, 371 |
| BsaHI | GRCGYC | 1 cut(s) | 43 |
| BsaJI | CCNNGG | 1 cut(s) | 407 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 535 |
| Bse3DI | GCAATG | 1 cut(s) | 29 |
| BseDI | CCNNGG | 1 cut(s) | 407 |
| BseGI | GGATG | 1 cut(s) | 199 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 535 |
| BseMI | GCAATG | 1 cut(s) | 29 |
| BseRI | GAGGAG | 1 cut(s) | 335 |
| BseXI | GCAGC | 1 cut(s) | 568 |
| BshFI | GGCC | 1 cut(s) | 611 |
| BslFI | GGGAC | 1 cut(s) | 54 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 535 |
| BsmAI | GTCTC | 2 cut(s) | 346, 533 |
| BsmBI | CGTCTC | 1 cut(s) | 346 |
| BsmFI | GGGAC | 1 cut(s) | 54 |
| BsmI | GAATGC | 1 cut(s) | 684 |
| BsnI | GGCC | 1 cut(s) | 611 |
| Bsp143I | GATC | 3 cut(s) | 423, 520, 707 |
| BspANI | GGCC | 1 cut(s) | 611 |
| BspHI | TCATGA | 1 cut(s) | 166 |
| BspLI | GGNNCC | 1 cut(s) | 709 |
| BspMI | ACCTGC | 1 cut(s) | 660 |
| BspPI | GGATC | 3 cut(s) | 431, 702, 715 |
| BspTI | CTTAAG | 1 cut(s) | 52 |
| BsrDI | GCAATG | 1 cut(s) | 29 |
| BssECI | CCNNGG | 1 cut(s) | 407 |
| BssMI | GATC | 3 cut(s) | 423, 520, 707 |
| BssNI | GRCGYC | 1 cut(s) | 43 |
| BssT1I | CCWWGG | 1 cut(s) | 407 |
| Bst6I | CTCTTC | 1 cut(s) | 740 |
| BstACI | GRCGYC | 1 cut(s) | 43 |
| BstAFI | CTTAAG | 1 cut(s) | 52 |
| BstC8I | GCNNGC | 1 cut(s) | 513 |
| BstDEI | CTNAG | 2 cut(s) | 238, 630 |
| BstF5I | GGATG | 1 cut(s) | 199 |
| BstHHI | GCGC | 1 cut(s) | 205 |
| BstKTI | GATC | 3 cut(s) | 426, 523, 710 |
| BstMAI | GTCTC | 2 cut(s) | 346, 533 |
| BstMBI | GATC | 3 cut(s) | 423, 520, 707 |
| BstNSI | RCATGY | 1 cut(s) | 515 |
| BstV1I | GCAGC | 1 cut(s) | 568 |
| BstX2I | RGATCY | 1 cut(s) | 707 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 598 |
| BstYI | RGATCY | 1 cut(s) | 707 |
| BsuI | GTATCC | 2 cut(s) | 162, 226 |
| BsuRI | GGCC | 1 cut(s) | 611 |
| BtrI | CACGTC | 1 cut(s) | 448 |
| BtsCI | GGATG | 1 cut(s) | 199 |
| BveI | ACCTGC | 1 cut(s) | 660 |
| Cac8I | GCNNGC | 1 cut(s) | 513 |
| CciI | TCATGA | 1 cut(s) | 166 |
| CfoI | GCGC | 1 cut(s) | 205 |
| Csp6I | GTAC | 1 cut(s) | 428 |
| CviAII | CATG | 4 cut(s) | 145, 167, 227, 512 |
| CviQI | GTAC | 1 cut(s) | 428 |
| DdeI | CTNAG | 2 cut(s) | 238, 630 |
| DpnI | GATC | 3 cut(s) | 425, 522, 709 |
| DpnII | GATC | 3 cut(s) | 423, 520, 707 |
| Eam1104I | CTCTTC | 1 cut(s) | 740 |
| EarI | CTCTTC | 1 cut(s) | 740 |
| Eco130I | CCWWGG | 1 cut(s) | 407 |
| Eco57I | CTGAAG | 1 cut(s) | 554 |
| EcoT14I | CCWWGG | 1 cut(s) | 407 |
| EcoT22I | ATGCAT | 1 cut(s) | 228 |
| ErhI | CCWWGG | 1 cut(s) | 407 |
| Esp3I | CGTCTC | 1 cut(s) | 346 |
| FaeI | CATG | 4 cut(s) | 148, 170, 230, 515 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 78, 110 |
| FaqI | GGGAC | 1 cut(s) | 54 |
| FatI | CATG | 4 cut(s) | 144, 166, 226, 511 |
| Fnu4HI | GCNGC | 1 cut(s) | 557 |
| FokI | GGATG | 1 cut(s) | 206 |
| Fsp4HI | GCNGC | 1 cut(s) | 557 |
| FspBI | CTAG | 5 cut(s) | 63, 158, 615, 684, 795 |
| FspI | TGCGCA | 1 cut(s) | 204 |
| GlaI | GCGC | 1 cut(s) | 204 |
| GluI | GCNGC | 1 cut(s) | 557 |
| HaeIII | GGCC | 1 cut(s) | 611 |
| HhaI | GCGC | 1 cut(s) | 205 |
| Hin1I | GRCGYC | 1 cut(s) | 43 |
| Hin1II | CATG | 4 cut(s) | 148, 170, 230, 515 |
| Hin6I | GCGC | 1 cut(s) | 203 |
| HinP1I | GCGC | 1 cut(s) | 203 |
| HinfI | GANTC | 4 cut(s) | 8, 282, 499, 626 |
| HphI | GGTGA | 3 cut(s) | 125, 277, 776 |
| Hpy188I | TCNGA | 2 cut(s) | 419, 726 |
| Hpy188III | TCNNGA | 4 cut(s) | 167, 293, 548, 742 |
| HpyAV | CCTTC | 5 cut(s) | 80, 272, 355, 388, 460 |
| HpyCH4IV | ACGT | 4 cut(s) | 43, 339, 447, 480 |
| HpyCH4V | TGCA | 6 cut(s) | 226, 436, 511, 515, 641, 720 |
| HpyF3I | CTNAG | 2 cut(s) | 238, 630 |
| HpySE526I | ACGT | 4 cut(s) | 43, 339, 447, 480 |
| Hsp92I | GRCGYC | 1 cut(s) | 43 |
| Hsp92II | CATG | 4 cut(s) | 148, 170, 230, 515 |
| HspAI | GCGC | 1 cut(s) | 203 |
| Kzo9I | GATC | 3 cut(s) | 423, 520, 707 |
| LpnPI | CCDG | 6 cut(s) | 27, 306, 518, 557, 561, 655 |
| Lsp1109I | GCAGC | 1 cut(s) | 568 |
| LweI | GCATC | 1 cut(s) | 365 |
| MaeI | CTAG | 5 cut(s) | 63, 158, 615, 684, 795 |
| MaeII | ACGT | 4 cut(s) | 43, 339, 447, 480 |
| MaeIII | GTNAC | 2 cut(s) | 113, 757 |
| MalI | GATC | 3 cut(s) | 425, 522, 709 |
| MboI | GATC | 3 cut(s) | 423, 520, 707 |
| MboII | GAAGA | 3 cut(s) | 82, 530, 757 |
| MflI | RGATCY | 1 cut(s) | 707 |
| MluCI | AATT | 1 cut(s) | 440 |
| MlyI | GAGTC | 3 cut(s) | 2, 508, 620 |
| Mph1103I | ATGCAT | 1 cut(s) | 228 |
| MseI | TTAA | 2 cut(s) | 53, 129 |
| MspCI | CTTAAG | 1 cut(s) | 52 |
| Mva1269I | GAATGC | 1 cut(s) | 684 |
| NdeII | GATC | 3 cut(s) | 423, 520, 707 |
| NlaIII | CATG | 4 cut(s) | 148, 170, 230, 515 |
| NlaIV | GGNNCC | 1 cut(s) | 709 |
| NmuCI | GTSAC | 2 cut(s) | 113, 757 |
| NsbI | TGCGCA | 1 cut(s) | 204 |
| NsiI | ATGCAT | 1 cut(s) | 228 |
| NspI | RCATGY | 1 cut(s) | 515 |
| PaeI | GCATGC | 1 cut(s) | 515 |
| PagI | TCATGA | 1 cut(s) | 166 |
| PctI | GAATGC | 1 cut(s) | 684 |
| PfeI | GAWTC | 1 cut(s) | 282 |
| PkrI | GCNGC | 1 cut(s) | 558 |
| PleI | GAGTC | 3 cut(s) | 2, 507, 620 |
| PpsI | GAGTC | 3 cut(s) | 2, 507, 620 |
| PspN4I | GGNNCC | 1 cut(s) | 709 |
| PsuI | RGATCY | 1 cut(s) | 707 |
| RsaI | GTAC | 1 cut(s) | 429 |
| RsaNI | GTAC | 1 cut(s) | 428 |
| SaqAI | TTAA | 2 cut(s) | 53, 129 |
| SatI | GCNGC | 1 cut(s) | 557 |
| Sau3AI | GATC | 3 cut(s) | 423, 520, 707 |
| SchI | GAGTC | 3 cut(s) | 2, 508, 620 |
| SfaNI | GCATC | 1 cut(s) | 365 |
| SmlI | CTYRAG | 3 cut(s) | 52, 251, 350 |
| SmoI | CTYRAG | 3 cut(s) | 52, 251, 350 |
| SpeI | ACTAGT | 1 cut(s) | 794 |
| SphI | GCATGC | 1 cut(s) | 515 |
| Sse9I | AATT | 1 cut(s) | 440 |
| SspMI | CTAG | 5 cut(s) | 63, 158, 615, 684, 795 |
| StyI | CCWWGG | 1 cut(s) | 407 |
| TaiI | ACGT | 4 cut(s) | 46, 342, 450, 483 |
| TaqI | TCGA | 1 cut(s) | 108 |
| TasI | AATT | 1 cut(s) | 440 |
| TfiI | GAWTC | 1 cut(s) | 282 |
| Tru1I | TTAA | 2 cut(s) | 53, 129 |
| Tru9I | TTAA | 2 cut(s) | 53, 129 |
| TseFI | GTSAC | 2 cut(s) | 113, 757 |
| TseI | GCWGC | 1 cut(s) | 556 |
| Tsp45I | GTSAC | 2 cut(s) | 113, 757 |
| TspDTI | ATGAA | 3 cut(s) | 99, 155, 210 |
| Vha464I | CTTAAG | 1 cut(s) | 52 |
| XapI | RAATTY | 1 cut(s) | 440 |
| XceI | RCATGY | 1 cut(s) | 515 |
| XspI | CTAG | 5 cut(s) | 63, 158, 615, 684, 795 |
| ZraI | GACGTC | 1 cut(s) | 44 |
| Zsp2I | ATGCAT | 1 cut(s) | 228 |