Integrase core domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 107 |
| AclWI | GGATC | 1 cut(s) | 211 |
| AcsI | RAATTY | 2 cut(s) | 122, 380 |
| AdeI | CACNNNGTG | 1 cut(s) | 439 |
| AfaI | GTAC | 1 cut(s) | 164 |
| AgsI | TTSAA | 5 cut(s) | 88, 133, 262, 367, 406 |
| AluBI | AGCT | 4 cut(s) | 65, 139, 200, 363 |
| AluI | AGCT | 4 cut(s) | 65, 139, 200, 363 |
| Alw21I | GWGCWC | 1 cut(s) | 435 |
| AlwI | GGATC | 1 cut(s) | 211 |
| AoxI | GGCC | 2 cut(s) | 72, 192 |
| ApoI | RAATTY | 2 cut(s) | 122, 380 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 230 |
| AspS9I | GGNCC | 2 cut(s) | 72, 311 |
| AsuC2I | CCSGG | 1 cut(s) | 285 |
| AsuHPI | GGTGA | 1 cut(s) | 400 |
| AvaII | GGWCC | 1 cut(s) | 311 |
| BauI | CACGAG | 1 cut(s) | 155 |
| Bbv12I | GWGCWC | 1 cut(s) | 435 |
| BccI | CCATC | 1 cut(s) | 45 |
| BceAI | ACGGC | 3 cut(s) | 59, 167, 446 |
| BcnI | CCSGG | 1 cut(s) | 285 |
| Bme1390I | CCNGG | 1 cut(s) | 285 |
| Bme18I | GGWCC | 1 cut(s) | 311 |
| BmgT120I | GGNCC | 2 cut(s) | 72, 311 |
| BmrFI | CCNGG | 1 cut(s) | 285 |
| BmsI | GCATC | 2 cut(s) | 406, 448 |
| BpuMI | CCSGG | 1 cut(s) | 285 |
| BsaJI | CCNNGG | 5 cut(s) | 45, 220, 438, 453, 462 |
| BseDI | CCNNGG | 5 cut(s) | 45, 220, 438, 453, 462 |
| BseGI | GGATG | 2 cut(s) | 448, 463 |
| BsgI | GTGCAG | 1 cut(s) | 366 |
| BshFI | GGCC | 2 cut(s) | 74, 194 |
| BsiHKAI | GWGCWC | 1 cut(s) | 435 |
| BsiSI | CCGG | 1 cut(s) | 285 |
| BsiWI | CGTACG | 1 cut(s) | 162 |
| BslFI | GGGAC | 1 cut(s) | 387 |
| BsmFI | GGGAC | 1 cut(s) | 387 |
| BsmI | GAATGC | 1 cut(s) | 175 |
| BsnI | GGCC | 2 cut(s) | 74, 194 |
| Bsp1286I | GDGCHC | 1 cut(s) | 435 |
| Bsp143I | GATC | 1 cut(s) | 216 |
| BspACI | CCGC | 1 cut(s) | 107 |
| BspANI | GGCC | 2 cut(s) | 74, 194 |
| BspPI | GGATC | 1 cut(s) | 211 |
| BssECI | CCNNGG | 5 cut(s) | 45, 220, 438, 453, 462 |
| BssMI | GATC | 1 cut(s) | 216 |
| BssSI | CACGAG | 1 cut(s) | 155 |
| BssT1I | CCWWGG | 1 cut(s) | 453 |
| Bst2BI | CACGAG | 1 cut(s) | 155 |
| Bst4CI | ACNGT | 2 cut(s) | 315, 439 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 33, 250 |
| BstC8I | GCNNGC | 2 cut(s) | 34, 175 |
| BstDEI | CTNAG | 1 cut(s) | 97 |
| BstDSI | CCRYGG | 4 cut(s) | 45, 220, 438, 462 |
| BstF5I | GGATG | 2 cut(s) | 448, 463 |
| BstKTI | GATC | 1 cut(s) | 219 |
| BstMBI | GATC | 1 cut(s) | 216 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 33, 71, 250 |
| BstNSI | RCATGY | 2 cut(s) | 36, 94 |
| BstSCI | CCNGG | 1 cut(s) | 283 |
| BsuRI | GGCC | 2 cut(s) | 74, 194 |
| BtgI | CCRYGG | 4 cut(s) | 45, 220, 438, 462 |
| BtsCI | GGATG | 2 cut(s) | 448, 463 |
| Cac8I | GCNNGC | 2 cut(s) | 34, 175 |
| Cfr13I | GGNCC | 2 cut(s) | 72, 311 |
| Csp6I | GTAC | 1 cut(s) | 163 |
| CviAII | CATG | 6 cut(s) | 33, 91, 206, 214, 341, 377 |
| CviJI | RGCY | 7 cut(s) | 65, 74, 139, 194, 200, 363, 409 |
| CviKI_1 | RGCY | 7 cut(s) | 65, 74, 139, 194, 200, 363, 409 |
| CviQI | GTAC | 1 cut(s) | 163 |
| DdeI | CTNAG | 1 cut(s) | 97 |
| DpnI | GATC | 1 cut(s) | 218 |
| DpnII | GATC | 1 cut(s) | 216 |
| DraIII | CACNNNGTG | 1 cut(s) | 439 |
| Eco130I | CCWWGG | 1 cut(s) | 453 |
| Eco47I | GGWCC | 1 cut(s) | 311 |
| EcoT14I | CCWWGG | 1 cut(s) | 453 |
| ErhI | CCWWGG | 1 cut(s) | 453 |
| FaeI | CATG | 6 cut(s) | 36, 94, 209, 217, 344, 380 |
| FaqI | GGGAC | 1 cut(s) | 387 |
| FatI | CATG | 6 cut(s) | 32, 90, 205, 213, 340, 376 |
| FauI | CCCGC | 1 cut(s) | 100 |
| FokI | GGATG | 2 cut(s) | 455, 470 |
| HaeIII | GGCC | 2 cut(s) | 74, 194 |
| HapII | CCGG | 1 cut(s) | 285 |
| Hin1II | CATG | 6 cut(s) | 36, 94, 209, 217, 344, 380 |
| HindIII | AAGCTT | 2 cut(s) | 198, 361 |
| HpaII | CCGG | 1 cut(s) | 285 |
| HphI | GGTGA | 1 cut(s) | 400 |
| Hpy166II | GTNNAC | 2 cut(s) | 272, 391 |
| Hpy188III | TCNNGA | 1 cut(s) | 79 |
| Hpy8I | GTNNAC | 2 cut(s) | 272, 391 |
| HpyAV | CCTTC | 1 cut(s) | 241 |
| HpyCH4III | ACNGT | 2 cut(s) | 315, 439 |
| HpyCH4IV | ACGT | 2 cut(s) | 274, 295 |
| HpyCH4V | TGCA | 3 cut(s) | 94, 173, 347 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 33, 71, 250 |
| HpyF3I | CTNAG | 1 cut(s) | 97 |
| HpySE526I | ACGT | 2 cut(s) | 274, 295 |
| Hsp92II | CATG | 6 cut(s) | 36, 94, 209, 217, 344, 380 |
| Kzo9I | GATC | 1 cut(s) | 216 |
| LmnI | GCTCC | 2 cut(s) | 55, 430 |
| LpnPI | CCDG | 1 cut(s) | 298 |
| LweI | GCATC | 2 cut(s) | 406, 448 |
| MaeII | ACGT | 2 cut(s) | 274, 295 |
| MaeIII | GTNAC | 1 cut(s) | 291 |
| MalI | GATC | 1 cut(s) | 218 |
| MboI | GATC | 1 cut(s) | 216 |
| MboII | GAAGA | 1 cut(s) | 32 |
| MfeI | CAATTG | 1 cut(s) | 128 |
| MhlI | GDGCHC | 1 cut(s) | 435 |
| MluCI | AATT | 4 cut(s) | 122, 128, 262, 380 |
| MmeI | TCCRAC | 1 cut(s) | 33 |
| MnlI | CCTC | 1 cut(s) | 151 |
| MroXI | GAANNNNTTC | 1 cut(s) | 230 |
| MseI | TTAA | 1 cut(s) | 384 |
| MslI | CAYNNNNRTG | 1 cut(s) | 99 |
| MspI | CCGG | 1 cut(s) | 285 |
| MspR9I | CCNGG | 1 cut(s) | 285 |
| MunI | CAATTG | 1 cut(s) | 128 |
| Mva1269I | GAATGC | 1 cut(s) | 175 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 33, 71, 250 |
| NciI | CCSGG | 1 cut(s) | 285 |
| NdeII | GATC | 1 cut(s) | 216 |
| NlaIII | CATG | 6 cut(s) | 36, 94, 209, 217, 344, 380 |
| NspI | RCATGY | 2 cut(s) | 36, 94 |
| PaeI | GCATGC | 1 cut(s) | 36 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 162 |
| PctI | GAATGC | 1 cut(s) | 175 |
| PdmI | GAANNNNTTC | 1 cut(s) | 230 |
| Pfl23II | CGTACG | 1 cut(s) | 162 |
| PspLI | CGTACG | 1 cut(s) | 162 |
| PspPI | GGNCC | 2 cut(s) | 72, 311 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 280, 312 |
| RsaI | GTAC | 1 cut(s) | 164 |
| RsaNI | GTAC | 1 cut(s) | 163 |
| RseI | CAYNNNNRTG | 1 cut(s) | 99 |
| SaqAI | TTAA | 1 cut(s) | 384 |
| Sau3AI | GATC | 1 cut(s) | 216 |
| Sau96I | GGNCC | 2 cut(s) | 72, 311 |
| ScrFI | CCNGG | 1 cut(s) | 285 |
| SduI | GDGCHC | 1 cut(s) | 435 |
| SetI | ASST | 7 cut(s) | 67, 141, 202, 277, 298, 365, 390 |
| SfaNI | GCATC | 2 cut(s) | 406, 448 |
| SinI | GGWCC | 1 cut(s) | 311 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 99 |
| SphI | GCATGC | 1 cut(s) | 36 |
| Sse9I | AATT | 4 cut(s) | 122, 128, 262, 380 |
| SsiI | CCGC | 1 cut(s) | 107 |
| StyD4I | CCNGG | 1 cut(s) | 283 |
| StyI | CCWWGG | 1 cut(s) | 453 |
| TaaI | ACNGT | 2 cut(s) | 315, 439 |
| TaiI | ACGT | 2 cut(s) | 277, 298 |
| TaqI | TCGA | 1 cut(s) | 13 |
| TasI | AATT | 4 cut(s) | 122, 128, 262, 380 |
| Tru1I | TTAA | 1 cut(s) | 384 |
| Tru9I | TTAA | 1 cut(s) | 384 |
| TspDTI | ATGAA | 4 cut(s) | 117, 159, 329, 393 |
| TspGWI | ACGGA | 1 cut(s) | 209 |
| VpaK11BI | GGWCC | 1 cut(s) | 311 |
| XapI | RAATTY | 2 cut(s) | 122, 380 |
| XceI | RCATGY | 2 cut(s) | 36, 94 |
| XmnI | GAANNNNTTC | 1 cut(s) | 230 |