transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 19 - 112 | 2e-18 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 253 |
| AcsI | RAATTY | 6 cut(s) | 29, 201, 313, 334, 544, 556 |
| AfaI | GTAC | 3 cut(s) | 68, 196, 618 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 287, 663 |
| AgsI | TTSAA | 2 cut(s) | 76, 177 |
| AjnI | CCWGG | 1 cut(s) | 467 |
| AluBI | AGCT | 1 cut(s) | 173 |
| AluI | AGCT | 1 cut(s) | 173 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 589 |
| ApeKI | GCWGC | 4 cut(s) | 146, 583, 597, 607 |
| ApoI | RAATTY | 6 cut(s) | 29, 201, 313, 334, 544, 556 |
| AseI | ATTAAT | 1 cut(s) | 294 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 234, 379 |
| AsuHPI | GGTGA | 2 cut(s) | 311, 489 |
| BbvI | GCAGC | 4 cut(s) | 133, 595, 609, 619 |
| BccI | CCATC | 3 cut(s) | 74, 87, 520 |
| BceAI | ACGGC | 1 cut(s) | 595 |
| BciT130I | CCWGG | 1 cut(s) | 469 |
| BfmI | CTRYAG | 1 cut(s) | 605 |
| BglII | AGATCT | 1 cut(s) | 262 |
| BisI | GCNGC | 4 cut(s) | 147, 584, 598, 608 |
| BlsI | GCNGC | 4 cut(s) | 148, 585, 599, 609 |
| BmcAI | AGTACT | 1 cut(s) | 196 |
| Bme1390I | CCNGG | 1 cut(s) | 469 |
| BmiI | GGNNCC | 1 cut(s) | 134 |
| BmrFI | CCNGG | 1 cut(s) | 469 |
| BmsI | GCATC | 1 cut(s) | 638 |
| Bpu10I | CCTNAGC | 1 cut(s) | 269 |
| BsaJI | CCNNGG | 1 cut(s) | 468 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 521, 551 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 287, 663 |
| Bse1I | ACTGG | 1 cut(s) | 489 |
| Bse3DI | GCAATG | 1 cut(s) | 141 |
| BseBI | CCWGG | 1 cut(s) | 469 |
| BseDI | CCNNGG | 1 cut(s) | 468 |
| BseGI | GGATG | 1 cut(s) | 85 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 287, 663 |
| BseMI | GCAATG | 1 cut(s) | 141 |
| BseMII | CTCAG | 3 cut(s) | 67, 283, 476 |
| BseNI | ACTGG | 1 cut(s) | 489 |
| BseXI | GCAGC | 4 cut(s) | 133, 595, 609, 619 |
| BseYI | CCCAGC | 1 cut(s) | 169 |
| BsgI | GTGCAG | 1 cut(s) | 495 |
| BslFI | GGGAC | 1 cut(s) | 679 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 287, 663 |
| BsmFI | GGGAC | 1 cut(s) | 679 |
| BsmI | GAATGC | 1 cut(s) | 11 |
| Bsp143I | GATC | 1 cut(s) | 262 |
| BspCNI | CTCAG | 3 cut(s) | 66, 282, 475 |
| BspHI | TCATGA | 1 cut(s) | 238 |
| BspLI | GGNNCC | 1 cut(s) | 134 |
| BspMAI | CTGCAG | 1 cut(s) | 609 |
| BsrDI | GCAATG | 1 cut(s) | 141 |
| BsrI | ACTGG | 1 cut(s) | 489 |
| BssECI | CCNNGG | 1 cut(s) | 468 |
| BssMI | GATC | 1 cut(s) | 262 |
| Bst2UI | CCWGG | 1 cut(s) | 469 |
| BstC8I | GCNNGC | 1 cut(s) | 402 |
| BstDEI | CTNAG | 4 cut(s) | 53, 269, 345, 462 |
| BstEII | GGTNACC | 1 cut(s) | 495 |
| BstF5I | GGATG | 1 cut(s) | 85 |
| BstKTI | GATC | 1 cut(s) | 265 |
| BstMBI | GATC | 1 cut(s) | 262 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 401 |
| BstNI | CCWGG | 1 cut(s) | 469 |
| BstNSI | RCATGY | 2 cut(s) | 567, 685 |
| BstPI | GGTNACC | 1 cut(s) | 495 |
| BstSCI | CCNGG | 1 cut(s) | 467 |
| BstSFI | CTRYAG | 1 cut(s) | 605 |
| BstV1I | GCAGC | 4 cut(s) | 133, 595, 609, 619 |
| BstX2I | RGATCY | 1 cut(s) | 262 |
| BstYI | RGATCY | 1 cut(s) | 262 |
| BtsCI | GGATG | 1 cut(s) | 85 |
| BtsI | GCAGTG | 1 cut(s) | 395 |
| BtsIMutI | CAGTG | 2 cut(s) | 395, 496 |
| Cac8I | GCNNGC | 1 cut(s) | 402 |
| CaiI | CAGNNNCTG | 1 cut(s) | 589 |
| CciI | TCATGA | 1 cut(s) | 238 |
| CseI | GACGC | 1 cut(s) | 676 |
| Csp6I | GTAC | 3 cut(s) | 67, 195, 617 |
| CviAII | CATG | 7 cut(s) | 239, 246, 424, 503, 564, 640, 682 |
| CviJI | RGCY | 4 cut(s) | 173, 331, 600, 610 |
| CviKI_1 | RGCY | 4 cut(s) | 173, 331, 600, 610 |
| CviQI | GTAC | 3 cut(s) | 67, 195, 617 |
| DdeI | CTNAG | 4 cut(s) | 53, 269, 345, 462 |
| DpnI | GATC | 1 cut(s) | 264 |
| DpnII | GATC | 1 cut(s) | 262 |
| Eco91I | GGTNACC | 1 cut(s) | 495 |
| EcoO65I | GGTNACC | 1 cut(s) | 495 |
| EcoRII | CCWGG | 1 cut(s) | 467 |
| FaeI | CATG | 7 cut(s) | 242, 249, 427, 506, 567, 643, 685 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 109, 141 |
| FaqI | GGGAC | 1 cut(s) | 679 |
| FatI | CATG | 7 cut(s) | 238, 245, 423, 502, 563, 639, 681 |
| Fnu4HI | GCNGC | 4 cut(s) | 147, 584, 598, 608 |
| FokI | GGATG | 1 cut(s) | 92 |
| Fsp4HI | GCNGC | 4 cut(s) | 147, 584, 598, 608 |
| GluI | GCNGC | 4 cut(s) | 147, 584, 598, 608 |
| GsaI | CCCAGC | 1 cut(s) | 173 |
| HgaI | GACGC | 1 cut(s) | 676 |
| Hin1II | CATG | 7 cut(s) | 242, 249, 427, 506, 567, 643, 685 |
| HinfI | GANTC | 3 cut(s) | 41, 349, 434 |
| HphI | GGTGA | 2 cut(s) | 311, 489 |
| Hpy166II | GTNNAC | 2 cut(s) | 69, 281 |
| Hpy188I | TCNGA | 4 cut(s) | 56, 385, 465, 541 |
| Hpy188III | TCNNGA | 3 cut(s) | 114, 239, 271 |
| Hpy8I | GTNNAC | 2 cut(s) | 69, 281 |
| HpyAV | CCTTC | 1 cut(s) | 70 |
| HpyCH4IV | ACGT | 3 cut(s) | 253, 283, 377 |
| HpyCH4V | TGCA | 7 cut(s) | 9, 86, 149, 395, 400, 512, 607 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 401 |
| HpyF3I | CTNAG | 4 cut(s) | 53, 269, 345, 462 |
| HpySE526I | ACGT | 3 cut(s) | 253, 283, 377 |
| Hsp92II | CATG | 7 cut(s) | 242, 249, 427, 506, 567, 643, 685 |
| Kzo9I | GATC | 1 cut(s) | 262 |
| LpnPI | CCDG | 8 cut(s) | 99, 183, 256, 454, 481, 502, 602, 607 |
| Lsp1109I | GCAGC | 4 cut(s) | 133, 595, 609, 619 |
| LweI | GCATC | 1 cut(s) | 638 |
| MaeII | ACGT | 3 cut(s) | 253, 283, 377 |
| MaeIII | GTNAC | 4 cut(s) | 96, 254, 299, 495 |
| MalI | GATC | 1 cut(s) | 264 |
| MboI | GATC | 1 cut(s) | 262 |
| MboII | GAAGA | 1 cut(s) | 544 |
| MfeI | CAATTG | 1 cut(s) | 410 |
| MflI | RGATCY | 1 cut(s) | 262 |
| MluCI | AATT | 8 cut(s) | 29, 201, 234, 313, 334, 410, 544, 556 |
| MlyI | GAGTC | 1 cut(s) | 343 |
| MnlI | CCTC | 3 cut(s) | 365, 471, 510 |
| MroXI | GAANNNNTTC | 2 cut(s) | 234, 379 |
| MseI | TTAA | 4 cut(s) | 155, 206, 294, 357 |
| MslI | CAYNNNNRTG | 1 cut(s) | 308 |
| MspR9I | CCNGG | 1 cut(s) | 469 |
| MunI | CAATTG | 1 cut(s) | 410 |
| Mva1269I | GAATGC | 1 cut(s) | 11 |
| MvaI | CCWGG | 1 cut(s) | 469 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 401 |
| NdeII | GATC | 1 cut(s) | 262 |
| NlaIII | CATG | 7 cut(s) | 242, 249, 427, 506, 567, 643, 685 |
| NlaIV | GGNNCC | 1 cut(s) | 134 |
| NmuCI | GTSAC | 2 cut(s) | 299, 495 |
| NspI | RCATGY | 2 cut(s) | 567, 685 |
| PagI | TCATGA | 1 cut(s) | 238 |
| PctI | GAATGC | 1 cut(s) | 11 |
| PdmI | GAANNNNTTC | 2 cut(s) | 234, 379 |
| PfeI | GAWTC | 2 cut(s) | 41, 434 |
| PkrI | GCNGC | 4 cut(s) | 148, 585, 599, 609 |
| PleI | GAGTC | 1 cut(s) | 343 |
| PpsI | GAGTC | 1 cut(s) | 343 |
| PshBI | ATTAAT | 1 cut(s) | 294 |
| Psp1406I | AACGTT | 1 cut(s) | 253 |
| Psp6I | CCWGG | 1 cut(s) | 467 |
| PspEI | GGTNACC | 1 cut(s) | 495 |
| PspFI | CCCAGC | 1 cut(s) | 169 |
| PspGI | CCWGG | 1 cut(s) | 467 |
| PspN4I | GGNNCC | 1 cut(s) | 134 |
| PstI | CTGCAG | 1 cut(s) | 609 |
| PstNI | CAGNNNCTG | 1 cut(s) | 589 |
| PsuI | RGATCY | 1 cut(s) | 262 |
| RsaI | GTAC | 3 cut(s) | 68, 196, 618 |
| RsaNI | GTAC | 3 cut(s) | 67, 195, 617 |
| RseI | CAYNNNNRTG | 1 cut(s) | 308 |
| SaqAI | TTAA | 4 cut(s) | 155, 206, 294, 357 |
| SatI | GCNGC | 4 cut(s) | 147, 584, 598, 608 |
| Sau3AI | GATC | 1 cut(s) | 262 |
| ScaI | AGTACT | 1 cut(s) | 196 |
| SchI | GAGTC | 1 cut(s) | 343 |
| ScrFI | CCNGG | 1 cut(s) | 469 |
| SetI | ASST | 8 cut(s) | 175, 226, 256, 286, 380, 463, 502, 591 |
| SfaNI | GCATC | 1 cut(s) | 638 |
| SfcI | CTRYAG | 1 cut(s) | 605 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 308 |
| Sse9I | AATT | 8 cut(s) | 29, 201, 234, 313, 334, 410, 544, 556 |
| StyD4I | CCNGG | 1 cut(s) | 467 |
| TaiI | ACGT | 3 cut(s) | 256, 286, 380 |
| TasI | AATT | 8 cut(s) | 29, 201, 234, 313, 334, 410, 544, 556 |
| TatI | WGTACW | 1 cut(s) | 194 |
| TfiI | GAWTC | 2 cut(s) | 41, 434 |
| Tru1I | TTAA | 4 cut(s) | 155, 206, 294, 357 |
| Tru9I | TTAA | 4 cut(s) | 155, 206, 294, 357 |
| TscAI | CASTG | 2 cut(s) | 402, 496 |
| TseFI | GTSAC | 2 cut(s) | 299, 495 |
| TseI | GCWGC | 4 cut(s) | 146, 583, 597, 607 |
| Tsp45I | GTSAC | 2 cut(s) | 299, 495 |
| TspDTI | ATGAA | 5 cut(s) | 227, 243, 255, 326, 567 |
| TspGWI | ACGGA | 1 cut(s) | 54 |
| TspRI | CASTG | 2 cut(s) | 402, 496 |
| VspI | ATTAAT | 1 cut(s) | 294 |
| XapI | RAATTY | 6 cut(s) | 29, 201, 313, 334, 544, 556 |
| XceI | RCATGY | 2 cut(s) | 567, 685 |
| XmnI | GAANNNNTTC | 2 cut(s) | 234, 379 |
| ZrmI | AGTACT | 1 cut(s) | 196 |