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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 96 |
| AatII | GACGTC | 1 cut(s) | 662 |
| AclI | AACGTT | 2 cut(s) | 308, 539 |
| AclWI | GGATC | 5 cut(s) | 104, 426, 439, 555, 623 |
| AcsI | RAATTY | 1 cut(s) | 283 |
| AcyI | GRCGYC | 1 cut(s) | 659 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 197, 234, 388 |
| AflII | CTTAAG | 1 cut(s) | 404 |
| AgsI | TTSAA | 4 cut(s) | 120, 160, 233, 368 |
| AhlI | ACTAGT | 1 cut(s) | 323 |
| AjnI | CCWGG | 1 cut(s) | 133 |
| AluBI | AGCT | 3 cut(s) | 338, 359, 463 |
| AluI | AGCT | 3 cut(s) | 338, 359, 463 |
| AlwI | GGATC | 5 cut(s) | 104, 426, 439, 555, 623 |
| AoxI | GGCC | 1 cut(s) | 236 |
| ApaI | GGGCCC | 1 cut(s) | 240 |
| ApeKI | GCWGC | 1 cut(s) | 373 |
| ApoI | RAATTY | 1 cut(s) | 283 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 180 |
| AspS9I | GGNCC | 7 cut(s) | 89, 98, 145, 165, 221, 236, 237 |
| AsuHPI | GGTGA | 2 cut(s) | 542, 657 |
| AvaII | GGWCC | 5 cut(s) | 89, 98, 145, 165, 221 |
| AxyI | CCTNAGG | 2 cut(s) | 489, 672 |
| BaeGI | GKGCMC | 1 cut(s) | 240 |
| BanII | GRGCYC | 1 cut(s) | 240 |
| BbvI | GCAGC | 1 cut(s) | 385 |
| BccI | CCATC | 4 cut(s) | 45, 132, 156, 583 |
| BciT130I | CCWGG | 1 cut(s) | 135 |
| BcuI | ACTAGT | 1 cut(s) | 323 |
| BfaI | CTAG | 2 cut(s) | 324, 468 |
| BfrI | CTTAAG | 1 cut(s) | 404 |
| BisI | GCNGC | 1 cut(s) | 374 |
| BlsI | GCNGC | 1 cut(s) | 375 |
| Bme1390I | CCNGG | 1 cut(s) | 135 |
| Bme18I | GGWCC | 5 cut(s) | 89, 98, 145, 165, 221 |
| BmgT120I | GGNCC | 7 cut(s) | 89, 98, 145, 165, 221, 236, 237 |
| BmiI | GGNNCC | 4 cut(s) | 90, 146, 238, 239 |
| BmrFI | CCNGG | 1 cut(s) | 135 |
| BmsI | GCATC | 2 cut(s) | 271, 559 |
| BpuEI | CTTGAG | 3 cut(s) | 78, 201, 641 |
| BsaBI | GATNNNNATC | 1 cut(s) | 55 |
| BsaHI | GRCGYC | 1 cut(s) | 659 |
| BsaJI | CCNNGG | 4 cut(s) | 133, 387, 564, 642 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 197, 234, 388 |
| Bse21I | CCTNAGG | 2 cut(s) | 489, 672 |
| Bse8I | GATNNNNATC | 1 cut(s) | 55 |
| BseBI | CCWGG | 1 cut(s) | 135 |
| BseDI | CCNNGG | 4 cut(s) | 133, 387, 564, 642 |
| BseGI | GGATG | 5 cut(s) | 56, 143, 148, 262, 574 |
| BseJI | GATNNNNATC | 1 cut(s) | 55 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 197, 234, 388 |
| BseMII | CTCAG | 1 cut(s) | 291 |
| BseSI | GKGCMC | 1 cut(s) | 240 |
| BseXI | GCAGC | 1 cut(s) | 385 |
| BshFI | GGCC | 1 cut(s) | 238 |
| BslFI | GGGAC | 3 cut(s) | 102, 158, 630 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 197, 234, 388 |
| BsmFI | GGGAC | 3 cut(s) | 102, 158, 630 |
| BsnI | GGCC | 1 cut(s) | 238 |
| Bsp120I | GGGCCC | 1 cut(s) | 236 |
| Bsp1286I | GDGCHC | 1 cut(s) | 240 |
| Bsp143I | GATC | 6 cut(s) | 19, 109, 418, 444, 547, 628 |
| BspANI | GGCC | 1 cut(s) | 238 |
| BspCNI | CTCAG | 1 cut(s) | 290 |
| BspHI | TCATGA | 1 cut(s) | 435 |
| BspLI | GGNNCC | 4 cut(s) | 90, 146, 238, 239 |
| BspPI | GGATC | 5 cut(s) | 104, 426, 439, 555, 623 |
| BspTI | CTTAAG | 1 cut(s) | 404 |
| BssECI | CCNNGG | 4 cut(s) | 133, 387, 564, 642 |
| BssMI | GATC | 6 cut(s) | 19, 109, 418, 444, 547, 628 |
| BssNI | GRCGYC | 1 cut(s) | 659 |
| BssT1I | CCWWGG | 3 cut(s) | 387, 564, 642 |
| Bst2UI | CCWGG | 1 cut(s) | 135 |
| BstACI | GRCGYC | 1 cut(s) | 659 |
| BstAFI | CTTAAG | 1 cut(s) | 404 |
| BstC8I | GCNNGC | 1 cut(s) | 580 |
| BstDEI | CTNAG | 5 cut(s) | 102, 194, 277, 489, 672 |
| BstF5I | GGATG | 5 cut(s) | 56, 143, 148, 262, 574 |
| BstKTI | GATC | 6 cut(s) | 22, 112, 421, 447, 550, 631 |
| BstMBI | GATC | 6 cut(s) | 19, 109, 418, 444, 547, 628 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 259 |
| BstNI | CCWGG | 1 cut(s) | 135 |
| BstNSI | RCATGY | 2 cut(s) | 14, 262 |
| BstSCI | CCNGG | 1 cut(s) | 133 |
| BstSLI | GKGCMC | 1 cut(s) | 240 |
| BstV1I | GCAGC | 1 cut(s) | 385 |
| BstX2I | RGATCY | 2 cut(s) | 444, 628 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 455 |
| BstYI | RGATCY | 2 cut(s) | 444, 628 |
| Bsu36I | CCTNAGG | 2 cut(s) | 489, 672 |
| BsuRI | GGCC | 1 cut(s) | 238 |
| BtsCI | GGATG | 5 cut(s) | 56, 143, 148, 262, 574 |
| BtsI | GCAGTG | 1 cut(s) | 22 |
| BtsIMutI | CAGTG | 1 cut(s) | 22 |
| Cac8I | GCNNGC | 1 cut(s) | 580 |
| CciI | TCATGA | 1 cut(s) | 435 |
| Cfr13I | GGNCC | 7 cut(s) | 89, 98, 145, 165, 221, 236, 237 |
| CviAII | CATG | 4 cut(s) | 11, 259, 436, 544 |
| CviJI | RGCY | 7 cut(s) | 238, 253, 317, 338, 359, 463, 604 |
| CviKI_1 | RGCY | 7 cut(s) | 238, 253, 317, 338, 359, 463, 604 |
| DdeI | CTNAG | 5 cut(s) | 102, 194, 277, 489, 672 |
| DpnI | GATC | 6 cut(s) | 21, 111, 420, 446, 549, 630 |
| DpnII | GATC | 6 cut(s) | 19, 109, 418, 444, 547, 628 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 96 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 96 |
| Eco130I | CCWWGG | 3 cut(s) | 387, 564, 642 |
| Eco24I | GRGCYC | 1 cut(s) | 240 |
| Eco32I | GATATC | 1 cut(s) | 80 |
| Eco47I | GGWCC | 5 cut(s) | 89, 98, 145, 165, 221 |
| Eco81I | CCTNAGG | 2 cut(s) | 489, 672 |
| EcoO109I | RGGNCCY | 5 cut(s) | 89, 98, 221, 236, 237 |
| EcoRII | CCWGG | 1 cut(s) | 133 |
| EcoRV | GATATC | 1 cut(s) | 80 |
| EcoT14I | CCWWGG | 3 cut(s) | 387, 564, 642 |
| EcoT22I | ATGCAT | 1 cut(s) | 264 |
| EcoT38I | GRGCYC | 1 cut(s) | 240 |
| ErhI | CCWWGG | 3 cut(s) | 387, 564, 642 |
| FaeI | CATG | 4 cut(s) | 14, 262, 439, 547 |
| FaiI | YATR | 7 cut(s) | 12, 108, 260, 300, 437, 545, 685 |
| FaqI | GGGAC | 3 cut(s) | 102, 158, 630 |
| FatI | CATG | 4 cut(s) | 10, 258, 435, 543 |
| Fnu4HI | GCNGC | 1 cut(s) | 374 |
| FokI | GGATG | 5 cut(s) | 63, 135, 150, 249, 581 |
| FriOI | GRGCYC | 1 cut(s) | 240 |
| Fsp4HI | GCNGC | 1 cut(s) | 374 |
| FspBI | CTAG | 2 cut(s) | 324, 468 |
| GluI | GCNGC | 1 cut(s) | 374 |
| HaeIII | GGCC | 1 cut(s) | 238 |
| Hin1I | GRCGYC | 1 cut(s) | 659 |
| Hin1II | CATG | 4 cut(s) | 14, 262, 439, 547 |
| HindIII | AAGCTT | 2 cut(s) | 336, 357 |
| HinfI | GANTC | 4 cut(s) | 56, 187, 364, 506 |
| HphI | GGTGA | 2 cut(s) | 542, 657 |
| Hpy166II | GTNNAC | 2 cut(s) | 165, 430 |
| Hpy188I | TCNGA | 2 cut(s) | 186, 249 |
| Hpy188III | TCNNGA | 2 cut(s) | 279, 436 |
| Hpy8I | GTNNAC | 2 cut(s) | 165, 430 |
| HpyAV | CCTTC | 1 cut(s) | 234 |
| HpyCH4IV | ACGT | 5 cut(s) | 308, 498, 539, 638, 659 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 62, 262, 398, 635 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 259 |
| HpyF3I | CTNAG | 5 cut(s) | 102, 194, 277, 489, 672 |
| HpySE526I | ACGT | 5 cut(s) | 308, 498, 539, 638, 659 |
| Hsp92I | GRCGYC | 1 cut(s) | 659 |
| Hsp92II | CATG | 4 cut(s) | 14, 262, 439, 547 |
| Kzo9I | GATC | 6 cut(s) | 19, 109, 418, 444, 547, 628 |
| LmnI | GCTCC | 1 cut(s) | 468 |
| LpnPI | CCDG | 4 cut(s) | 120, 147, 264, 645 |
| Lsp1109I | GCAGC | 1 cut(s) | 385 |
| LweI | GCATC | 2 cut(s) | 271, 559 |
| MaeI | CTAG | 2 cut(s) | 324, 468 |
| MaeII | ACGT | 5 cut(s) | 308, 498, 539, 638, 659 |
| MaeIII | GTNAC | 3 cut(s) | 13, 494, 517 |
| MalI | GATC | 6 cut(s) | 21, 111, 420, 446, 549, 630 |
| MboI | GATC | 6 cut(s) | 19, 109, 418, 444, 547, 628 |
| MboII | GAAGA | 1 cut(s) | 546 |
| MflI | RGATCY | 2 cut(s) | 444, 628 |
| MhlI | GDGCHC | 1 cut(s) | 240 |
| MluCI | AATT | 2 cut(s) | 283, 453 |
| MmeI | TCCRAC | 1 cut(s) | 291 |
| Mph1103I | ATGCAT | 1 cut(s) | 264 |
| MroXI | GAANNNNTTC | 1 cut(s) | 180 |
| MseI | TTAA | 1 cut(s) | 405 |
| MslI | CAYNNNNRTG | 1 cut(s) | 587 |
| MspCI | CTTAAG | 1 cut(s) | 404 |
| MspR9I | CCNGG | 1 cut(s) | 135 |
| MvaI | CCWGG | 1 cut(s) | 135 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 259 |
| NdeII | GATC | 6 cut(s) | 19, 109, 418, 444, 547, 628 |
| NlaIII | CATG | 4 cut(s) | 14, 262, 439, 547 |
| NlaIV | GGNNCC | 4 cut(s) | 90, 146, 238, 239 |
| NsiI | ATGCAT | 1 cut(s) | 264 |
| NspI | RCATGY | 2 cut(s) | 14, 262 |
| PagI | TCATGA | 1 cut(s) | 435 |
| PdmI | GAANNNNTTC | 1 cut(s) | 180 |
| PfeI | GAWTC | 4 cut(s) | 56, 187, 364, 506 |
| PkrI | GCNGC | 1 cut(s) | 375 |
| PpuMI | RGGWCCY | 3 cut(s) | 89, 98, 221 |
| Psp1406I | AACGTT | 2 cut(s) | 308, 539 |
| Psp5II | RGGWCCY | 3 cut(s) | 89, 98, 221 |
| Psp6I | CCWGG | 1 cut(s) | 133 |
| PspGI | CCWGG | 1 cut(s) | 133 |
| PspN4I | GGNNCC | 4 cut(s) | 90, 146, 238, 239 |
| PspOMI | GGGCCC | 1 cut(s) | 236 |
| PspPI | GGNCC | 7 cut(s) | 89, 98, 145, 165, 221, 236, 237 |
| PspPPI | RGGWCCY | 3 cut(s) | 89, 98, 221 |
| PsuI | RGATCY | 2 cut(s) | 444, 628 |
| RseI | CAYNNNNRTG | 1 cut(s) | 587 |
| SaqAI | TTAA | 1 cut(s) | 405 |
| SatI | GCNGC | 1 cut(s) | 374 |
| Sau3AI | GATC | 6 cut(s) | 19, 109, 418, 444, 547, 628 |
| Sau96I | GGNCC | 7 cut(s) | 89, 98, 145, 165, 221, 236, 237 |
| ScrFI | CCNGG | 1 cut(s) | 135 |
| SduI | GDGCHC | 1 cut(s) | 240 |
| SfaNI | GCATC | 2 cut(s) | 271, 559 |
| SinI | GGWCC | 5 cut(s) | 89, 98, 145, 165, 221 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 587 |
| SmlI | CTYRAG | 4 cut(s) | 93, 216, 404, 620 |
| SmoI | CTYRAG | 4 cut(s) | 93, 216, 404, 620 |
| SpeI | ACTAGT | 1 cut(s) | 323 |
| Sse9I | AATT | 2 cut(s) | 283, 453 |
| SspMI | CTAG | 2 cut(s) | 324, 468 |
| StyD4I | CCNGG | 1 cut(s) | 133 |
| StyI | CCWWGG | 3 cut(s) | 387, 564, 642 |
| TaiI | ACGT | 5 cut(s) | 311, 501, 542, 641, 662 |
| TasI | AATT | 2 cut(s) | 283, 453 |
| TfiI | GAWTC | 4 cut(s) | 56, 187, 364, 506 |
| Tru1I | TTAA | 1 cut(s) | 405 |
| Tru9I | TTAA | 1 cut(s) | 405 |
| TscAI | CASTG | 1 cut(s) | 29 |
| TseI | GCWGC | 1 cut(s) | 373 |
| TspDTI | ATGAA | 5 cut(s) | 54, 189, 424, 498, 532 |
| TspRI | CASTG | 1 cut(s) | 29 |
| Vha464I | CTTAAG | 1 cut(s) | 404 |
| VpaK11BI | GGWCC | 5 cut(s) | 89, 98, 145, 165, 221 |
| XapI | RAATTY | 1 cut(s) | 283 |
| XceI | RCATGY | 2 cut(s) | 14, 262 |
| XmnI | GAANNNNTTC | 1 cut(s) | 180 |
| XspI | CTAG | 2 cut(s) | 324, 468 |
| ZraI | GACGTC | 1 cut(s) | 660 |
| Zsp2I | ATGCAT | 1 cut(s) | 264 |