Integrase core domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 373 |
| AciI | CCGC | 2 cut(s) | 129, 349 |
| AclWI | GGATC | 1 cut(s) | 30 |
| AfaI | GTAC | 1 cut(s) | 304 |
| AgsI | TTSAA | 1 cut(s) | 56 |
| AlwI | GGATC | 1 cut(s) | 30 |
| Ama87I | CYCGRG | 1 cut(s) | 237 |
| AspS9I | GGNCC | 1 cut(s) | 89 |
| AvaI | CYCGRG | 1 cut(s) | 237 |
| AvaII | GGWCC | 1 cut(s) | 89 |
| BccI | CCATC | 1 cut(s) | 247 |
| BfaI | CTAG | 1 cut(s) | 222 |
| Bme18I | GGWCC | 1 cut(s) | 89 |
| BmeT110I | CYCGRG | 1 cut(s) | 237 |
| BmgT120I | GGNCC | 1 cut(s) | 89 |
| BmiI | GGNNCC | 1 cut(s) | 90 |
| BpuEI | CTTGAG | 1 cut(s) | 280 |
| BsaJI | CCNNGG | 2 cut(s) | 105, 358 |
| BseDI | CCNNGG | 2 cut(s) | 105, 358 |
| BseGI | GGATG | 1 cut(s) | 336 |
| Bsh1236I | CGCG | 1 cut(s) | 373 |
| BsiHKCI | CYCGRG | 1 cut(s) | 237 |
| BsmI | GAATGC | 1 cut(s) | 237 |
| BsoBI | CYCGRG | 1 cut(s) | 237 |
| Bsp143I | GATC | 1 cut(s) | 22 |
| Bsp19I | CCATGG | 1 cut(s) | 105 |
| Bsp68I | TCGCGA | 1 cut(s) | 373 |
| BspACI | CCGC | 2 cut(s) | 129, 349 |
| BspFNI | CGCG | 1 cut(s) | 373 |
| BspLI | GGNNCC | 1 cut(s) | 90 |
| BspPI | GGATC | 1 cut(s) | 30 |
| BssECI | CCNNGG | 2 cut(s) | 105, 358 |
| BssMI | GATC | 1 cut(s) | 22 |
| BssT1I | CCWWGG | 1 cut(s) | 105 |
| BstC8I | GCNNGC | 2 cut(s) | 351, 355 |
| BstDSI | CCRYGG | 1 cut(s) | 105 |
| BstF5I | GGATG | 1 cut(s) | 336 |
| BstFNI | CGCG | 1 cut(s) | 373 |
| BstKTI | GATC | 1 cut(s) | 25 |
| BstMBI | GATC | 1 cut(s) | 22 |
| BstUI | CGCG | 1 cut(s) | 373 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 152 |
| BtgI | CCRYGG | 1 cut(s) | 105 |
| BtsCI | GGATG | 1 cut(s) | 336 |
| BtsI | GCAGTG | 1 cut(s) | 289 |
| BtsIMutI | CAGTG | 1 cut(s) | 289 |
| BtuMI | TCGCGA | 1 cut(s) | 373 |
| Cac8I | GCNNGC | 2 cut(s) | 351, 355 |
| Cfr13I | GGNCC | 1 cut(s) | 89 |
| Csp6I | GTAC | 1 cut(s) | 303 |
| CviAII | CATG | 1 cut(s) | 106 |
| CviJI | RGCY | 1 cut(s) | 357 |
| CviKI_1 | RGCY | 1 cut(s) | 357 |
| CviQI | GTAC | 1 cut(s) | 303 |
| DpnI | GATC | 1 cut(s) | 24 |
| DpnII | GATC | 1 cut(s) | 22 |
| Eco130I | CCWWGG | 1 cut(s) | 105 |
| Eco47I | GGWCC | 1 cut(s) | 89 |
| Eco88I | CYCGRG | 1 cut(s) | 237 |
| EcoO109I | RGGNCCY | 1 cut(s) | 89 |
| EcoT14I | CCWWGG | 1 cut(s) | 105 |
| ErhI | CCWWGG | 1 cut(s) | 105 |
| FaeI | CATG | 1 cut(s) | 109 |
| FaiI | YATR | 9 cut(s) | 11, 44, 86, 107, 118, 139, 171, 248, 317 |
| FatI | CATG | 1 cut(s) | 105 |
| FauI | CCCGC | 1 cut(s) | 342 |
| FokI | GGATG | 1 cut(s) | 323 |
| FspBI | CTAG | 1 cut(s) | 222 |
| Hin1II | CATG | 1 cut(s) | 109 |
| HinfI | GANTC | 4 cut(s) | 179, 240, 368, 386 |
| Hpy166II | GTNNAC | 1 cut(s) | 262 |
| Hpy188III | TCNNGA | 3 cut(s) | 297, 372, 390 |
| Hpy8I | GTNNAC | 1 cut(s) | 262 |
| HpyAV | CCTTC | 1 cut(s) | 107 |
| HpyCH4V | TGCA | 1 cut(s) | 194 |
| Hsp92II | CATG | 1 cut(s) | 109 |
| Kzo9I | GATC | 1 cut(s) | 22 |
| MaeI | CTAG | 1 cut(s) | 222 |
| MaeIII | GTNAC | 1 cut(s) | 309 |
| MalI | GATC | 1 cut(s) | 24 |
| MboI | GATC | 1 cut(s) | 22 |
| MluCI | AATT | 1 cut(s) | 75 |
| MlyI | GAGTC | 1 cut(s) | 249 |
| MnlI | CCTC | 5 cut(s) | 111, 246, 250, 279, 353 |
| MseI | TTAA | 1 cut(s) | 18 |
| Mva1269I | GAATGC | 1 cut(s) | 237 |
| MvnI | CGCG | 1 cut(s) | 373 |
| NcoI | CCATGG | 1 cut(s) | 105 |
| NdeII | GATC | 1 cut(s) | 22 |
| NlaIII | CATG | 1 cut(s) | 109 |
| NlaIV | GGNNCC | 1 cut(s) | 90 |
| NmeAIII | GCCGAG | 1 cut(s) | 383 |
| NruI | TCGCGA | 1 cut(s) | 373 |
| PaeR7I | CTCGAG | 1 cut(s) | 237 |
| PctI | GAATGC | 1 cut(s) | 237 |
| PfeI | GAWTC | 3 cut(s) | 179, 368, 386 |
| PleI | GAGTC | 1 cut(s) | 248 |
| PpsI | GAGTC | 1 cut(s) | 248 |
| PpuMI | RGGWCCY | 1 cut(s) | 89 |
| Psp5II | RGGWCCY | 1 cut(s) | 89 |
| PspN4I | GGNNCC | 1 cut(s) | 90 |
| PspPI | GGNCC | 1 cut(s) | 89 |
| PspPPI | RGGWCCY | 1 cut(s) | 89 |
| PspXI | VCTCGAGB | 1 cut(s) | 237 |
| RruI | TCGCGA | 1 cut(s) | 373 |
| RsaI | GTAC | 1 cut(s) | 304 |
| RsaNI | GTAC | 1 cut(s) | 303 |
| SaqAI | TTAA | 1 cut(s) | 18 |
| Sau3AI | GATC | 1 cut(s) | 22 |
| Sau96I | GGNCC | 1 cut(s) | 89 |
| SchI | GAGTC | 1 cut(s) | 249 |
| SetI | ASST | 3 cut(s) | 227, 261, 364 |
| Sfr274I | CTCGAG | 1 cut(s) | 237 |
| SinI | GGWCC | 1 cut(s) | 89 |
| SlaI | CTCGAG | 1 cut(s) | 237 |
| SmlI | CTYRAG | 2 cut(s) | 237, 295 |
| SmoI | CTYRAG | 2 cut(s) | 237, 295 |
| Sse9I | AATT | 1 cut(s) | 75 |
| SsiI | CCGC | 2 cut(s) | 129, 349 |
| SspI | AATATT | 1 cut(s) | 60 |
| SspMI | CTAG | 1 cut(s) | 222 |
| StyI | CCWWGG | 1 cut(s) | 105 |
| TaqI | TCGA | 4 cut(s) | 238, 284, 325, 366 |
| TasI | AATT | 1 cut(s) | 75 |
| TatI | WGTACW | 1 cut(s) | 302 |
| TfiI | GAWTC | 3 cut(s) | 179, 368, 386 |
| Tru1I | TTAA | 1 cut(s) | 18 |
| Tru9I | TTAA | 1 cut(s) | 18 |
| TscAI | CASTG | 1 cut(s) | 296 |
| TspRI | CASTG | 1 cut(s) | 296 |
| VpaK11BI | GGWCC | 1 cut(s) | 89 |
| XhoI | CTCGAG | 1 cut(s) | 237 |
| XspI | CTAG | 1 cut(s) | 222 |