protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 438 - 497 | 1.2e-07 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 527 - 624 | 2.4e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 551 - 654 | 8.3e-38 | RNase H-like domain found in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1542 |
| AatII | GACGTC | 1 cut(s) | 541 |
| Acc16I | TGCGCA | 1 cut(s) | 699 |
| Acc36I | ACCTGC | 1 cut(s) | 6 |
| Acc65I | GGTACC | 1 cut(s) | 1856 |
| AccB1I | GGYRCC | 1 cut(s) | 1856 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1086 |
| AccI | GTMKAC | 1 cut(s) | 978 |
| AccIII | TCCGGA | 1 cut(s) | 1648 |
| AciI | CCGC | 3 cut(s) | 1077, 1097, 2707 |
| AclI | AACGTT | 1 cut(s) | 2769 |
| AclWI | GGATC | 8 cut(s) | 239, 252, 402, 1319, 1936, 1949, 2136, 2149 |
| AcoI | YGGCCR | 1 cut(s) | 2701 |
| AcsI | RAATTY | 3 cut(s) | 1480, 1835, 2544 |
| AcuI | CTGAAG | 2 cut(s) | 903, 2072 |
| AcyI | GRCGYC | 1 cut(s) | 538 |
| AfaI | GTAC | 5 cut(s) | 271, 450, 1390, 1858, 2757 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 100, 175, 863, 1086, 1288, 2053 |
| AflII | CTTAAG | 2 cut(s) | 547, 1610 |
| AhlI | ACTAGT | 1 cut(s) | 2228 |
| AjnI | CCWGG | 3 cut(s) | 247, 927, 1384 |
| Alw21I | GWGCWC | 2 cut(s) | 1809, 2427 |
| Alw26I | GTCTC | 9 cut(s) | 208, 841, 989, 1190, 1282, 1528, 2051, 2251, 2642 |
| AlwI | GGATC | 8 cut(s) | 239, 252, 402, 1319, 1936, 1949, 2136, 2149 |
| Aor13HI | TCCGGA | 1 cut(s) | 1648 |
| AoxI | GGCC | 5 cut(s) | 102, 930, 2334, 2701, 2751 |
| ApeKI | GCWGC | 3 cut(s) | 1886, 2074, 2471 |
| ApoI | RAATTY | 3 cut(s) | 1480, 1835, 2544 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1836, 2450 |
| Asp718I | GGTACC | 1 cut(s) | 1856 |
| AspA2I | CCTAGG | 2 cut(s) | 310, 355 |
| AspLEI | GCGC | 1 cut(s) | 700 |
| AspS9I | GGNCC | 5 cut(s) | 925, 931, 1656, 2307, 2334 |
| AsuHPI | GGTGA | 6 cut(s) | 620, 730, 772, 2210, 2364, 2707 |
| AsuII | TTCGAA | 1 cut(s) | 2587 |
| AvaII | GGWCC | 3 cut(s) | 925, 1656, 2307 |
| AvrII | CCTAGG | 2 cut(s) | 310, 355 |
| BaeGI | GKGCMC | 2 cut(s) | 1299, 1569 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 720, 753, 1848, 1881 |
| BalI | TGGCCA | 1 cut(s) | 2703 |
| BamHI | GGATCC | 3 cut(s) | 244, 1941, 2141 |
| BanI | GGYRCC | 1 cut(s) | 1856 |
| BanII | GRGCYC | 1 cut(s) | 1809 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 962, 994 |
| BbsI | GAAGAC | 2 cut(s) | 2285, 2600 |
| Bbv12I | GWGCWC | 2 cut(s) | 1809, 2427 |
| BbvCI | CCTCAGC | 1 cut(s) | 2241 |
| BbvI | GCAGC | 3 cut(s) | 1898, 2086, 2483 |
| BccI | CCATC | 9 cut(s) | 113, 468, 599, 1080, 1195, 1643, 1751, 1932, 2129 |
| BceAI | ACGGC | 2 cut(s) | 1167, 2738 |
| BciT130I | CCWGG | 3 cut(s) | 249, 929, 1386 |
| BciVI | GTATCC | 3 cut(s) | 657, 721, 1131 |
| BcoDI | GTCTC | 9 cut(s) | 208, 841, 989, 1190, 1282, 1528, 2051, 2251, 2642 |
| BcuI | ACTAGT | 1 cut(s) | 2228 |
| BfmI | CTRYAG | 2 cut(s) | 1351, 2338 |
| BfrI | CTTAAG | 2 cut(s) | 547, 1610 |
| BfuAI | ACCTGC | 1 cut(s) | 6 |
| BfuI | GTATCC | 3 cut(s) | 657, 721, 1131 |
| BisI | GCNGC | 3 cut(s) | 1887, 2075, 2472 |
| BlnI | CCTAGG | 2 cut(s) | 310, 355 |
| BlsI | GCNGC | 3 cut(s) | 1888, 2076, 2473 |
| Bme1390I | CCNGG | 3 cut(s) | 249, 929, 1386 |
| Bme18I | GGWCC | 3 cut(s) | 925, 1656, 2307 |
| BmgT120I | GGNCC | 5 cut(s) | 925, 931, 1656, 2307, 2334 |
| BmiI | GGNNCC | 5 cut(s) | 246, 933, 1858, 1943, 2143 |
| BmrFI | CCNGG | 3 cut(s) | 249, 929, 1386 |
| BmrI | ACTGGG | 1 cut(s) | 1277 |
| BmsI | GCATC | 7 cut(s) | 326, 860, 1672, 1762, 2314, 2458, 2515 |
| BmuI | ACTGGG | 1 cut(s) | 1277 |
| BpiI | GAAGAC | 2 cut(s) | 2285, 2600 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 188, 220, 505, 537 |
| BpmI | CTGGAG | 3 cut(s) | 1166, 1368, 1538 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2241, 2781 |
| Bpu14I | TTCGAA | 1 cut(s) | 2587 |
| BpuEI | CTTGAG | 4 cut(s) | 767, 866, 962, 1741 |
| BsaHI | GRCGYC | 1 cut(s) | 538 |
| BsaI | GGTCTC | 4 cut(s) | 989, 1282, 1528, 2251 |
| BsaJI | CCNNGG | 3 cut(s) | 310, 355, 1925 |
| BsaWI | WCCGGW | 1 cut(s) | 1648 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 306, 336, 1139, 1169 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 100, 175, 863, 1086, 1288, 2053 |
| Bse1I | ACTGG | 3 cut(s) | 1004, 1283, 2309 |
| BseAI | TCCGGA | 1 cut(s) | 1648 |
| BseBI | CCWGG | 3 cut(s) | 249, 929, 1386 |
| BseDI | CCNNGG | 3 cut(s) | 310, 355, 1925 |
| BseGI | GGATG | 8 cut(s) | 43, 445, 694, 1091, 1462, 1567, 2329, 2473 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 100, 175, 863, 1086, 1288, 2053 |
| BseMII | CTCAG | 3 cut(s) | 1538, 2232, 2772 |
| BseNI | ACTGG | 3 cut(s) | 1004, 1283, 2309 |
| BseRI | GAGGAG | 3 cut(s) | 830, 1163, 2525 |
| BseSI | GKGCMC | 2 cut(s) | 1299, 1569 |
| BseXI | GCAGC | 3 cut(s) | 1898, 2086, 2483 |
| BseYI | CCCAGC | 3 cut(s) | 472, 2474, 2650 |
| BsgI | GTGCAG | 2 cut(s) | 1005, 2678 |
| BshFI | GGCC | 5 cut(s) | 104, 932, 2336, 2703, 2753 |
| BshNI | GGYRCC | 1 cut(s) | 1856 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1809, 2427 |
| BsiSI | CCGG | 1 cut(s) | 1649 |
| BslFI | GGGAC | 3 cut(s) | 101, 549, 1001 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 100, 175, 863, 1086, 1288, 2053 |
| BsmAI | GTCTC | 9 cut(s) | 208, 841, 989, 1190, 1282, 1528, 2051, 2251, 2642 |
| BsmBI | CGTCTC | 3 cut(s) | 841, 1190, 2642 |
| BsmFI | GGGAC | 3 cut(s) | 101, 549, 1001 |
| BsmI | GAATGC | 3 cut(s) | 301, 2118, 2567 |
| BsnI | GGCC | 5 cut(s) | 104, 932, 2336, 2703, 2753 |
| Bso31I | GGTCTC | 4 cut(s) | 989, 1282, 1528, 2251 |
| Bsp119I | TTCGAA | 1 cut(s) | 2587 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1299, 1569, 1809, 2427 |
| Bsp13I | TCCGGA | 1 cut(s) | 1648 |
| Bsp1407I | TGTACA | 1 cut(s) | 448 |
| Bsp143I | GATC | 6 cut(s) | 244, 407, 1311, 1941, 2038, 2141 |
| BspACI | CCGC | 3 cut(s) | 1077, 1097, 2707 |
| BspANI | GGCC | 5 cut(s) | 104, 932, 2336, 2703, 2753 |
| BspCNI | CTCAG | 3 cut(s) | 1537, 2233, 2773 |
| BspEI | TCCGGA | 1 cut(s) | 1648 |
| BspHI | TCATGA | 1 cut(s) | 661 |
| BspLI | GGNNCC | 5 cut(s) | 246, 933, 1858, 1943, 2143 |
| BspMI | ACCTGC | 1 cut(s) | 6 |
| BspPI | GGATC | 8 cut(s) | 239, 252, 402, 1319, 1936, 1949, 2136, 2149 |
| BspT104I | TTCGAA | 1 cut(s) | 2587 |
| BspT107I | GGYRCC | 1 cut(s) | 1856 |
| BspTI | CTTAAG | 2 cut(s) | 547, 1610 |
| BspTNI | GGTCTC | 4 cut(s) | 989, 1282, 1528, 2251 |
| BsrGI | TGTACA | 1 cut(s) | 448 |
| BsrI | ACTGG | 3 cut(s) | 1004, 1283, 2309 |
| BssECI | CCNNGG | 3 cut(s) | 310, 355, 1925 |
| BssMI | GATC | 6 cut(s) | 244, 407, 1311, 1941, 2038, 2141 |
| BssNI | GRCGYC | 1 cut(s) | 538 |
| BssT1I | CCWWGG | 3 cut(s) | 310, 355, 1925 |
| Bst2UI | CCWGG | 3 cut(s) | 249, 929, 1386 |
| Bst4CI | ACNGT | 2 cut(s) | 170, 2284 |
| Bst6I | CTCTTC | 5 cut(s) | 960, 1035, 2174, 2630, 2651 |
| BstACI | GRCGYC | 1 cut(s) | 538 |
| BstAFI | CTTAAG | 2 cut(s) | 547, 1610 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2400 |
| BstAUI | TGTACA | 1 cut(s) | 448 |
| BstBI | TTCGAA | 1 cut(s) | 2587 |
| BstC8I | GCNNGC | 1 cut(s) | 2238 |
| BstDEI | CTNAG | 8 cut(s) | 30, 120, 733, 982, 1524, 2241, 2562, 2781 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 98 |
| BstF5I | GGATG | 8 cut(s) | 43, 445, 694, 1091, 1462, 1567, 2329, 2473 |
| BstHHI | GCGC | 1 cut(s) | 700 |
| BstKTI | GATC | 6 cut(s) | 247, 410, 1314, 1944, 2041, 2144 |
| BstMAI | GTCTC | 9 cut(s) | 208, 841, 989, 1190, 1282, 1528, 2051, 2251, 2642 |
| BstMBI | GATC | 6 cut(s) | 244, 407, 1311, 1941, 2038, 2141 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1703, 2333, 2400, 2438 |
| BstNI | CCWGG | 3 cut(s) | 249, 929, 1386 |
| BstSCI | CCNGG | 3 cut(s) | 247, 927, 1384 |
| BstSFI | CTRYAG | 2 cut(s) | 1351, 2338 |
| BstSLI | GKGCMC | 2 cut(s) | 1299, 1569 |
| BstV1I | GCAGC | 3 cut(s) | 1898, 2086, 2483 |
| BstV2I | GAAGAC | 2 cut(s) | 2285, 2600 |
| BstX2I | RGATCY | 4 cut(s) | 244, 407, 1941, 2141 |
| BstYI | RGATCY | 4 cut(s) | 244, 407, 1941, 2141 |
| BsuI | GTATCC | 3 cut(s) | 657, 721, 1131 |
| BsuRI | GGCC | 5 cut(s) | 104, 932, 2336, 2703, 2753 |
| BtsCI | GGATG | 8 cut(s) | 43, 445, 694, 1091, 1462, 1567, 2329, 2473 |
| BtsIMutI | CAGTG | 2 cut(s) | 927, 1011 |
| BveI | ACCTGC | 1 cut(s) | 6 |
| Cac8I | GCNNGC | 1 cut(s) | 2238 |
| CciI | TCATGA | 1 cut(s) | 661 |
| CfoI | GCGC | 1 cut(s) | 700 |
| Cfr13I | GGNCC | 5 cut(s) | 925, 931, 1656, 2307, 2334 |
| CseI | GACGC | 1 cut(s) | 1117 |
| Csp6I | GTAC | 5 cut(s) | 270, 449, 1389, 1857, 2756 |
| CviQI | GTAC | 5 cut(s) | 270, 449, 1389, 1857, 2756 |
| DdeI | CTNAG | 8 cut(s) | 30, 120, 733, 982, 1524, 2241, 2562, 2781 |
| DpnI | GATC | 6 cut(s) | 246, 409, 1313, 1943, 2040, 2143 |
| DpnII | GATC | 6 cut(s) | 244, 407, 1311, 1941, 2038, 2141 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1542 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1542 |
| EaeI | YGGCCR | 1 cut(s) | 2701 |
| Eam1104I | CTCTTC | 5 cut(s) | 960, 1035, 2174, 2630, 2651 |
| EarI | CTCTTC | 5 cut(s) | 960, 1035, 2174, 2630, 2651 |
| EciI | GGCGGA | 1 cut(s) | 1112 |
| Ecl136II | GAGCTC | 1 cut(s) | 1807 |
| Eco130I | CCWWGG | 3 cut(s) | 310, 355, 1925 |
| Eco24I | GRGCYC | 1 cut(s) | 1809 |
| Eco31I | GGTCTC | 4 cut(s) | 989, 1282, 1528, 2251 |
| Eco47I | GGWCC | 3 cut(s) | 925, 1656, 2307 |
| Eco53kI | GAGCTC | 1 cut(s) | 1807 |
| Eco57I | CTGAAG | 2 cut(s) | 903, 2072 |
| EcoICRI | GAGCTC | 1 cut(s) | 1807 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 98 |
| EcoO109I | RGGNCCY | 1 cut(s) | 931 |
| EcoRII | CCWGG | 3 cut(s) | 247, 927, 1384 |
| EcoT14I | CCWWGG | 3 cut(s) | 310, 355, 1925 |
| EcoT22I | ATGCAT | 1 cut(s) | 723 |
| EcoT38I | GRGCYC | 1 cut(s) | 1809 |
| ErhI | CCWWGG | 3 cut(s) | 310, 355, 1925 |
| Esp3I | CGTCTC | 3 cut(s) | 841, 1190, 2642 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 573, 605, 983, 1015, 1794, 1826, 2581, 2613 |
| FaqI | GGGAC | 3 cut(s) | 101, 549, 1001 |
| FblI | GTMKAC | 1 cut(s) | 978 |
| Fnu4HI | GCNGC | 3 cut(s) | 1887, 2075, 2472 |
| FokI | GGATG | 8 cut(s) | 50, 452, 701, 1098, 1469, 1574, 2336, 2480 |
| FriOI | GRGCYC | 1 cut(s) | 1809 |
| Fsp4HI | GCNGC | 3 cut(s) | 1887, 2075, 2472 |
| FspI | TGCGCA | 1 cut(s) | 699 |
| GlaI | GCGC | 1 cut(s) | 699 |
| GluI | GCNGC | 3 cut(s) | 1887, 2075, 2472 |
| GsaI | CCCAGC | 3 cut(s) | 476, 2478, 2654 |
| GsuI | CTGGAG | 3 cut(s) | 1166, 1368, 1538 |
| HaeIII | GGCC | 5 cut(s) | 104, 932, 2336, 2703, 2753 |
| HapII | CCGG | 1 cut(s) | 1649 |
| HgaI | GACGC | 1 cut(s) | 1117 |
| HhaI | GCGC | 1 cut(s) | 700 |
| Hin1I | GRCGYC | 1 cut(s) | 538 |
| Hin6I | GCGC | 1 cut(s) | 698 |
| HinP1I | GCGC | 1 cut(s) | 698 |
| HincII | GTYRAC | 4 cut(s) | 85, 457, 1547, 1623 |
| HindII | GTYRAC | 4 cut(s) | 85, 457, 1547, 1623 |
| HindIII | AAGCTT | 4 cut(s) | 253, 1596, 1607, 2430 |
| HpaI | GTTAAC | 1 cut(s) | 457 |
| HpaII | CCGG | 1 cut(s) | 1649 |
| HphI | GGTGA | 6 cut(s) | 620, 730, 772, 2210, 2364, 2707 |
| Hpy166II | GTNNAC | 8 cut(s) | 85, 166, 457, 979, 1547, 1623, 2287, 2672 |
| Hpy8I | GTNNAC | 8 cut(s) | 85, 166, 457, 979, 1547, 1623, 2287, 2672 |
| HpyCH4III | ACNGT | 2 cut(s) | 170, 2284 |
| HpyCH4IV | ACGT | 5 cut(s) | 538, 834, 1357, 1998, 2769 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1703, 2333, 2400, 2438 |
| HpyF3I | CTNAG | 8 cut(s) | 30, 120, 733, 982, 1524, 2241, 2562, 2781 |
| HpySE526I | ACGT | 5 cut(s) | 538, 834, 1357, 1998, 2769 |
| Hsp92I | GRCGYC | 1 cut(s) | 538 |
| HspAI | GCGC | 1 cut(s) | 698 |
| Kpn2I | TCCGGA | 1 cut(s) | 1648 |
| KpnI | GGTACC | 1 cut(s) | 1860 |
| KspAI | GTTAAC | 1 cut(s) | 457 |
| Kzo9I | GATC | 6 cut(s) | 244, 407, 1311, 1941, 2038, 2141 |
| LmnI | GCTCC | 5 cut(s) | 314, 1387, 1703, 1812, 2422 |
| Lsp1109I | GCAGC | 3 cut(s) | 1898, 2086, 2483 |
| LweI | GCATC | 7 cut(s) | 326, 860, 1672, 1762, 2314, 2458, 2515 |
| MaeII | ACGT | 5 cut(s) | 538, 834, 1357, 1998, 2769 |
| MaeIII | GTNAC | 7 cut(s) | 44, 608, 736, 778, 1864, 2191, 2370 |
| MalI | GATC | 6 cut(s) | 246, 409, 1313, 1943, 2040, 2143 |
| MboI | GATC | 6 cut(s) | 244, 407, 1311, 1941, 2038, 2141 |
| MfeI | CAATTG | 1 cut(s) | 2495 |
| MflI | RGATCY | 4 cut(s) | 244, 407, 1941, 2141 |
| MhlI | GDGCHC | 4 cut(s) | 1299, 1569, 1809, 2427 |
| MlsI | TGGCCA | 1 cut(s) | 2703 |
| MluCI | AATT | 9 cut(s) | 213, 280, 395, 1480, 1783, 1835, 2382, 2495, 2544 |
| MluNI | TGGCCA | 1 cut(s) | 2703 |
| MlyI | GAGTC | 5 cut(s) | 497, 786, 1024, 1756, 2026 |
| MmeI | TCCRAC | 3 cut(s) | 414, 1681, 2400 |
| Mox20I | TGGCCA | 1 cut(s) | 2703 |
| Mph1103I | ATGCAT | 1 cut(s) | 723 |
| MroI | TCCGGA | 1 cut(s) | 1648 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1836, 2450 |
| MscI | TGGCCA | 1 cut(s) | 2703 |
| MseI | TTAA | 9 cut(s) | 291, 324, 372, 456, 548, 624, 1611, 2262, 2788 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2366, 2462 |
| Msp20I | TGGCCA | 1 cut(s) | 2703 |
| MspA1I | CMGCKG | 2 cut(s) | 2474, 2654 |
| MspCI | CTTAAG | 2 cut(s) | 547, 1610 |
| MspI | CCGG | 1 cut(s) | 1649 |
| MspR9I | CCNGG | 3 cut(s) | 249, 929, 1386 |
| MunI | CAATTG | 1 cut(s) | 2495 |
| Mva1269I | GAATGC | 3 cut(s) | 301, 2118, 2567 |
| MvaI | CCWGG | 3 cut(s) | 249, 929, 1386 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1703, 2333, 2400, 2438 |
| NdeII | GATC | 6 cut(s) | 244, 407, 1311, 1941, 2038, 2141 |
| NlaIV | GGNNCC | 5 cut(s) | 246, 933, 1858, 1943, 2143 |
| NmuCI | GTSAC | 6 cut(s) | 44, 608, 736, 778, 2191, 2370 |
| NsbI | TGCGCA | 1 cut(s) | 699 |
| NsiI | ATGCAT | 1 cut(s) | 723 |
| NspV | TTCGAA | 1 cut(s) | 2587 |
| PagI | TCATGA | 1 cut(s) | 661 |
| PctI | GAATGC | 3 cut(s) | 301, 2118, 2567 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1836, 2450 |
| PfeI | GAWTC | 5 cut(s) | 226, 1110, 1265, 2092, 2584 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1086 |
| PfoI | TCCNGGA | 1 cut(s) | 247 |
| PkrI | GCNGC | 3 cut(s) | 1888, 2076, 2473 |
| PleI | GAGTC | 5 cut(s) | 497, 785, 1024, 1756, 2025 |
| PpsI | GAGTC | 5 cut(s) | 497, 785, 1024, 1756, 2025 |
| Psp124BI | GAGCTC | 1 cut(s) | 1809 |
| Psp1406I | AACGTT | 1 cut(s) | 2769 |
| Psp6I | CCWGG | 3 cut(s) | 247, 927, 1384 |
| PspFI | CCCAGC | 3 cut(s) | 472, 2474, 2650 |
| PspGI | CCWGG | 3 cut(s) | 247, 927, 1384 |
| PspN4I | GGNNCC | 5 cut(s) | 246, 933, 1858, 1943, 2143 |
| PspPI | GGNCC | 5 cut(s) | 925, 931, 1656, 2307, 2334 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 116, 148 |
| PsuI | RGATCY | 4 cut(s) | 244, 407, 1941, 2141 |
| PvuII | CAGCTG | 2 cut(s) | 2474, 2654 |
| RsaI | GTAC | 5 cut(s) | 271, 450, 1390, 1858, 2757 |
| RsaNI | GTAC | 5 cut(s) | 270, 449, 1389, 1857, 2756 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2366, 2462 |
| SacI | GAGCTC | 1 cut(s) | 1809 |
| SaqAI | TTAA | 9 cut(s) | 291, 324, 372, 456, 548, 624, 1611, 2262, 2788 |
| SatI | GCNGC | 3 cut(s) | 1887, 2075, 2472 |
| Sau3AI | GATC | 6 cut(s) | 244, 407, 1311, 1941, 2038, 2141 |
| Sau96I | GGNCC | 5 cut(s) | 925, 931, 1656, 2307, 2334 |
| SchI | GAGTC | 5 cut(s) | 497, 786, 1024, 1756, 2026 |
| ScrFI | CCNGG | 3 cut(s) | 249, 929, 1386 |
| SduI | GDGCHC | 4 cut(s) | 1299, 1569, 1809, 2427 |
| SfaNI | GCATC | 7 cut(s) | 326, 860, 1672, 1762, 2314, 2458, 2515 |
| SfcI | CTRYAG | 2 cut(s) | 1351, 2338 |
| SfuI | TTCGAA | 1 cut(s) | 2587 |
| SinI | GGWCC | 3 cut(s) | 925, 1656, 2307 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2366, 2462 |
| SmlI | CTYRAG | 6 cut(s) | 547, 746, 845, 941, 1610, 1756 |
| SmoI | CTYRAG | 6 cut(s) | 547, 746, 845, 941, 1610, 1756 |
| SpeI | ACTAGT | 1 cut(s) | 2228 |
| Sse9I | AATT | 9 cut(s) | 213, 280, 395, 1480, 1783, 1835, 2382, 2495, 2544 |
| SsiI | CCGC | 3 cut(s) | 1077, 1097, 2707 |
| SstI | GAGCTC | 1 cut(s) | 1809 |
| StyD4I | CCNGG | 3 cut(s) | 247, 927, 1384 |
| StyI | CCWWGG | 3 cut(s) | 310, 355, 1925 |
| TaaI | ACNGT | 2 cut(s) | 170, 2284 |
| TaiI | ACGT | 5 cut(s) | 541, 837, 1360, 2001, 2772 |
| TaqI | TCGA | 4 cut(s) | 603, 1532, 2380, 2587 |
| TasI | AATT | 9 cut(s) | 213, 280, 395, 1480, 1783, 1835, 2382, 2495, 2544 |
| TatI | WGTACW | 2 cut(s) | 269, 448 |
| TfiI | GAWTC | 5 cut(s) | 226, 1110, 1265, 2092, 2584 |
| Tru1I | TTAA | 9 cut(s) | 291, 324, 372, 456, 548, 624, 1611, 2262, 2788 |
| Tru9I | TTAA | 9 cut(s) | 291, 324, 372, 456, 548, 624, 1611, 2262, 2788 |
| TscAI | CASTG | 2 cut(s) | 927, 1011 |
| TseFI | GTSAC | 6 cut(s) | 44, 608, 736, 778, 2191, 2370 |
| TseI | GCWGC | 3 cut(s) | 1886, 2074, 2471 |
| Tsp45I | GTSAC | 6 cut(s) | 44, 608, 736, 778, 2191, 2370 |
| TspRI | CASTG | 2 cut(s) | 927, 1011 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1086 |
| Vha464I | CTTAAG | 2 cut(s) | 547, 1610 |
| VpaK11BI | GGWCC | 3 cut(s) | 925, 1656, 2307 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 98 |
| XapI | RAATTY | 3 cut(s) | 1480, 1835, 2544 |
| XbaI | TCTAGA | 1 cut(s) | 284 |
| XmaJI | CCTAGG | 2 cut(s) | 310, 355 |
| XmiI | GTMKAC | 1 cut(s) | 978 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1836, 2450 |
| ZraI | GACGTC | 1 cut(s) | 539 |
| Zsp2I | ATGCAT | 1 cut(s) | 723 |