transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 86 - 178 | 1.1e-19 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1518 |
| AccI | GTMKAC | 1 cut(s) | 231 |
| AccII | CGCG | 1 cut(s) | 83 |
| AciI | CCGC | 7 cut(s) | 8, 57, 81, 83, 566, 961, 1287 |
| AclI | AACGTT | 1 cut(s) | 451 |
| AclWI | GGATC | 3 cut(s) | 899, 959, 972 |
| AcoI | YGGCCR | 2 cut(s) | 674, 753 |
| AcsI | RAATTY | 6 cut(s) | 107, 191, 708, 949, 1211, 1432 |
| AfaI | GTAC | 1 cut(s) | 1134 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 538, 1274, 1523 |
| AgsI | TTSAA | 9 cut(s) | 74, 118, 375, 512, 713, 955, 1254, 1283, 1485 |
| AjnI | CCWGG | 1 cut(s) | 1522 |
| AluBI | AGCT | 6 cut(s) | 31, 126, 347, 502, 725, 1557 |
| AluI | AGCT | 6 cut(s) | 31, 126, 347, 502, 725, 1557 |
| Alw21I | GWGCWC | 2 cut(s) | 628, 800 |
| Alw26I | GTCTC | 3 cut(s) | 657, 933, 1147 |
| AlwI | GGATC | 3 cut(s) | 899, 959, 972 |
| Ama87I | CYCGRG | 1 cut(s) | 40 |
| AoxI | GGCC | 5 cut(s) | 36, 674, 753, 1293, 1407 |
| ApeKI | GCWGC | 6 cut(s) | 5, 86, 502, 599, 1000, 1375 |
| ApoI | RAATTY | 6 cut(s) | 107, 191, 708, 949, 1211, 1432 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 362, 432 |
| AspLEI | GCGC | 1 cut(s) | 577 |
| AspS9I | GGNCC | 2 cut(s) | 18, 776 |
| AsuC2I | CCSGG | 4 cut(s) | 312, 594, 930, 1011 |
| AsuHPI | GGTGA | 1 cut(s) | 437 |
| AvaI | CYCGRG | 1 cut(s) | 40 |
| AvaII | GGWCC | 2 cut(s) | 18, 776 |
| AxyI | CCTNAGG | 1 cut(s) | 1072 |
| BaeGI | GKGCMC | 1 cut(s) | 1518 |
| BamHI | GGATCC | 1 cut(s) | 964 |
| BbsI | GAAGAC | 1 cut(s) | 1422 |
| Bbv12I | GWGCWC | 2 cut(s) | 628, 800 |
| BbvI | GCAGC | 6 cut(s) | 17, 73, 489, 586, 1012, 1362 |
| BccI | CCATC | 3 cut(s) | 951, 1304, 1462 |
| BceAI | ACGGC | 2 cut(s) | 689, 854 |
| BciT130I | CCWGG | 1 cut(s) | 1524 |
| BclI | TGATCA | 2 cut(s) | 820, 1093 |
| BcnI | CCSGG | 4 cut(s) | 312, 594, 930, 1011 |
| BcoDI | GTCTC | 3 cut(s) | 657, 933, 1147 |
| BfaI | CTAG | 3 cut(s) | 1248, 1440, 1494 |
| BfuAI | ACCTGC | 1 cut(s) | 1518 |
| BisI | GCNGC | 8 cut(s) | 6, 57, 84, 87, 503, 600, 1001, 1376 |
| BlsI | GCNGC | 8 cut(s) | 7, 58, 85, 88, 504, 601, 1002, 1377 |
| Bme1390I | CCNGG | 5 cut(s) | 312, 594, 930, 1011, 1524 |
| Bme18I | GGWCC | 2 cut(s) | 18, 776 |
| BmeT110I | CYCGRG | 1 cut(s) | 40 |
| BmgT120I | GGNCC | 2 cut(s) | 18, 776 |
| BmiI | GGNNCC | 2 cut(s) | 884, 966 |
| BmrFI | CCNGG | 5 cut(s) | 312, 594, 930, 1011, 1524 |
| BmsI | GCATC | 3 cut(s) | 190, 417, 547 |
| BpiI | GAAGAC | 1 cut(s) | 1422 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 369, 401 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1290 |
| BpuEI | CTTGAG | 2 cut(s) | 170, 409 |
| BpuMI | CCSGG | 4 cut(s) | 312, 594, 930, 1011 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1092 |
| BsaI | GGTCTC | 2 cut(s) | 657, 933 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1355, 1385 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 538, 1274, 1523 |
| Bse21I | CCTNAGG | 1 cut(s) | 1072 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1092 |
| BseBI | CCWGG | 1 cut(s) | 1524 |
| BseGI | GGATG | 4 cut(s) | 408, 943, 1340, 1454 |
| BseJI | GATNNNNATC | 1 cut(s) | 1092 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 538, 1274, 1523 |
| BseMII | CTCAG | 2 cut(s) | 761, 1086 |
| BseRI | GAGGAG | 2 cut(s) | 512, 1376 |
| BseSI | GKGCMC | 1 cut(s) | 1518 |
| BseXI | GCAGC | 6 cut(s) | 17, 73, 489, 586, 1012, 1362 |
| Bsh1236I | CGCG | 1 cut(s) | 83 |
| BshFI | GGCC | 5 cut(s) | 38, 676, 755, 1295, 1409 |
| BsiHKAI | GWGCWC | 2 cut(s) | 628, 800 |
| BsiHKCI | CYCGRG | 1 cut(s) | 40 |
| BsiSI | CCGG | 4 cut(s) | 312, 593, 929, 1010 |
| BslFI | GGGAC | 2 cut(s) | 1019, 1461 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 538, 1274, 1523 |
| BsmAI | GTCTC | 3 cut(s) | 657, 933, 1147 |
| BsmFI | GGGAC | 2 cut(s) | 1019, 1461 |
| BsmI | GAATGC | 1 cut(s) | 69 |
| BsnI | GGCC | 5 cut(s) | 38, 676, 755, 1295, 1409 |
| Bso31I | GGTCTC | 2 cut(s) | 657, 933 |
| BsoBI | CYCGRG | 1 cut(s) | 40 |
| Bsp1286I | GDGCHC | 3 cut(s) | 628, 800, 1518 |
| Bsp143I | GATC | 4 cut(s) | 820, 904, 964, 1093 |
| Bsp19I | CCATGG | 3 cut(s) | 151, 162, 537 |
| BspACI | CCGC | 7 cut(s) | 8, 57, 81, 83, 566, 961, 1287 |
| BspANI | GGCC | 5 cut(s) | 38, 676, 755, 1295, 1409 |
| BspCNI | CTCAG | 2 cut(s) | 760, 1085 |
| BspFNI | CGCG | 1 cut(s) | 83 |
| BspLI | GGNNCC | 2 cut(s) | 884, 966 |
| BspMI | ACCTGC | 1 cut(s) | 1518 |
| BspPI | GGATC | 3 cut(s) | 899, 959, 972 |
| BspQI | GCTCTTC | 1 cut(s) | 162 |
| BspTNI | GGTCTC | 2 cut(s) | 657, 933 |
| BssMI | GATC | 4 cut(s) | 820, 904, 964, 1093 |
| BssT1I | CCWWGG | 7 cut(s) | 91, 151, 162, 537, 1404, 1410, 1467 |
| Bst2UI | CCWGG | 1 cut(s) | 1524 |
| Bst4CI | ACNGT | 2 cut(s) | 319, 1258 |
| Bst6I | CTCTTC | 1 cut(s) | 162 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 632 |
| BstDEI | CTNAG | 3 cut(s) | 747, 1072, 1290 |
| BstDSI | CCRYGG | 6 cut(s) | 81, 151, 162, 537, 671, 870 |
| BstF5I | GGATG | 4 cut(s) | 408, 943, 1340, 1454 |
| BstFNI | CGCG | 1 cut(s) | 83 |
| BstHHI | GCGC | 1 cut(s) | 577 |
| BstKTI | GATC | 4 cut(s) | 823, 907, 967, 1096 |
| BstMAI | GTCTC | 3 cut(s) | 657, 933, 1147 |
| BstMBI | GATC | 4 cut(s) | 820, 904, 964, 1093 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 178, 572, 623, 632 |
| BstNI | CCWGG | 1 cut(s) | 1524 |
| BstNSI | RCATGY | 1 cut(s) | 815 |
| BstSCI | CCNGG | 5 cut(s) | 310, 592, 928, 1009, 1522 |
| BstSLI | GKGCMC | 1 cut(s) | 1518 |
| BstUI | CGCG | 1 cut(s) | 83 |
| BstV1I | GCAGC | 6 cut(s) | 17, 73, 489, 586, 1012, 1362 |
| BstV2I | GAAGAC | 1 cut(s) | 1422 |
| BstX2I | RGATCY | 1 cut(s) | 964 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 871 |
| BstYI | RGATCY | 1 cut(s) | 964 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1072 |
| BsuRI | GGCC | 5 cut(s) | 38, 676, 755, 1295, 1409 |
| BtgI | CCRYGG | 6 cut(s) | 81, 151, 162, 537, 671, 870 |
| BtsCI | GGATG | 4 cut(s) | 408, 943, 1340, 1454 |
| BveI | ACCTGC | 1 cut(s) | 1518 |
| CfoI | GCGC | 1 cut(s) | 577 |
| Cfr13I | GGNCC | 2 cut(s) | 18, 776 |
| Cfr42I | CCGCGG | 1 cut(s) | 84 |
| CseI | GACGC | 1 cut(s) | 1132 |
| Csp6I | GTAC | 1 cut(s) | 1133 |
| CviAII | CATG | 8 cut(s) | 152, 163, 214, 538, 773, 812, 902, 1300 |
| CviQI | GTAC | 1 cut(s) | 1133 |
| DdeI | CTNAG | 3 cut(s) | 747, 1072, 1290 |
| DpnI | GATC | 4 cut(s) | 822, 906, 966, 1095 |
| DpnII | GATC | 4 cut(s) | 820, 904, 964, 1093 |
| DraI | TTTAAA | 1 cut(s) | 457 |
| EaeI | YGGCCR | 2 cut(s) | 674, 753 |
| Eam1104I | CTCTTC | 1 cut(s) | 162 |
| EarI | CTCTTC | 1 cut(s) | 162 |
| Eco130I | CCWWGG | 7 cut(s) | 91, 151, 162, 537, 1404, 1410, 1467 |
| Eco31I | GGTCTC | 2 cut(s) | 657, 933 |
| Eco47I | GGWCC | 2 cut(s) | 18, 776 |
| Eco81I | CCTNAGG | 1 cut(s) | 1072 |
| Eco88I | CYCGRG | 1 cut(s) | 40 |
| EcoRI | GAATTC | 3 cut(s) | 107, 191, 1432 |
| EcoRII | CCWGG | 1 cut(s) | 1522 |
| EcoT14I | CCWWGG | 7 cut(s) | 91, 151, 162, 537, 1404, 1410, 1467 |
| EcoT22I | ATGCAT | 1 cut(s) | 71 |
| ErhI | CCWWGG | 7 cut(s) | 91, 151, 162, 537, 1404, 1410, 1467 |
| FaeI | CATG | 8 cut(s) | 155, 166, 217, 541, 776, 815, 905, 1303 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 110, 142, 516, 548 |
| FaqI | GGGAC | 2 cut(s) | 1019, 1461 |
| FatI | CATG | 8 cut(s) | 151, 162, 213, 537, 772, 811, 901, 1299 |
| FauI | CCCGC | 3 cut(s) | 88, 559, 954 |
| FbaI | TGATCA | 2 cut(s) | 820, 1093 |
| FblI | GTMKAC | 1 cut(s) | 231 |
| Fnu4HI | GCNGC | 8 cut(s) | 6, 57, 84, 87, 503, 600, 1001, 1376 |
| FokI | GGATG | 4 cut(s) | 395, 930, 1327, 1441 |
| Fsp4HI | GCNGC | 8 cut(s) | 6, 57, 84, 87, 503, 600, 1001, 1376 |
| FspBI | CTAG | 3 cut(s) | 1248, 1440, 1494 |
| GlaI | GCGC | 1 cut(s) | 576 |
| GluI | GCNGC | 8 cut(s) | 6, 57, 84, 87, 503, 600, 1001, 1376 |
| HaeIII | GGCC | 5 cut(s) | 38, 676, 755, 1295, 1409 |
| HapII | CCGG | 4 cut(s) | 312, 593, 929, 1010 |
| HgaI | GACGC | 1 cut(s) | 1132 |
| HhaI | GCGC | 1 cut(s) | 577 |
| Hin1II | CATG | 8 cut(s) | 155, 166, 217, 541, 776, 815, 905, 1303 |
| Hin6I | GCGC | 1 cut(s) | 575 |
| HinP1I | GCGC | 1 cut(s) | 575 |
| HincII | GTYRAC | 2 cut(s) | 48, 232 |
| HindII | GTYRAC | 2 cut(s) | 48, 232 |
| HindIII | AAGCTT | 1 cut(s) | 124 |
| HinfI | GANTC | 6 cut(s) | 378, 428, 528, 769, 857, 1331 |
| HpaII | CCGG | 4 cut(s) | 312, 593, 929, 1010 |
| HphI | GGTGA | 1 cut(s) | 437 |
| Hpy166II | GTNNAC | 5 cut(s) | 48, 232, 479, 1177, 1316 |
| Hpy188I | TCNGA | 3 cut(s) | 18, 144, 246 |
| Hpy188III | TCNNGA | 3 cut(s) | 375, 388, 1355 |
| Hpy8I | GTNNAC | 5 cut(s) | 48, 232, 479, 1177, 1316 |
| Hpy99I | CGWCG | 1 cut(s) | 236 |
| HpyAV | CCTTC | 9 cut(s) | 247, 280, 447, 487, 518, 542, 641, 1264, 1541 |
| HpyCH4III | ACNGT | 2 cut(s) | 319, 1258 |
| HpyCH4IV | ACGT | 1 cut(s) | 451 |
| HpyCH4V | TGCA | 9 cut(s) | 69, 133, 602, 635, 805, 815, 1054, 1208, 1378 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 178, 572, 623, 632 |
| HpyF3I | CTNAG | 3 cut(s) | 747, 1072, 1290 |
| HpySE526I | ACGT | 1 cut(s) | 451 |
| Hsp92II | CATG | 8 cut(s) | 155, 166, 217, 541, 776, 815, 905, 1303 |
| HspAI | GCGC | 1 cut(s) | 575 |
| Ksp22I | TGATCA | 2 cut(s) | 820, 1093 |
| KspI | CCGCGG | 1 cut(s) | 84 |
| Kzo9I | GATC | 4 cut(s) | 820, 904, 964, 1093 |
| LguI | GCTCTTC | 1 cut(s) | 162 |
| LmnI | GCTCC | 1 cut(s) | 499 |
| Lsp1109I | GCAGC | 6 cut(s) | 17, 73, 489, 586, 1012, 1362 |
| LweI | GCATC | 3 cut(s) | 190, 417, 547 |
| MaeI | CTAG | 3 cut(s) | 1248, 1440, 1494 |
| MaeII | ACGT | 1 cut(s) | 451 |
| MaeIII | GTNAC | 2 cut(s) | 319, 1107 |
| MalI | GATC | 4 cut(s) | 822, 906, 966, 1095 |
| MboI | GATC | 4 cut(s) | 820, 904, 964, 1093 |
| MboII | GAAGA | 4 cut(s) | 179, 778, 1394, 1427 |
| MfeI | CAATTG | 1 cut(s) | 833 |
| MflI | RGATCY | 1 cut(s) | 964 |
| MhlI | GDGCHC | 3 cut(s) | 628, 800, 1518 |
| MlyI | GAGTC | 3 cut(s) | 387, 522, 1325 |
| MmeI | TCCRAC | 3 cut(s) | 436, 634, 1303 |
| Mph1103I | ATGCAT | 1 cut(s) | 71 |
| MroXI | GAANNNNTTC | 2 cut(s) | 362, 432 |
| MseI | TTAA | 4 cut(s) | 24, 456, 1104, 1304 |
| MslI | CAYNNNNRTG | 3 cut(s) | 64, 245, 816 |
| MspA1I | CMGCKG | 2 cut(s) | 8, 83 |
| MspI | CCGG | 4 cut(s) | 312, 593, 929, 1010 |
| MspR9I | CCNGG | 5 cut(s) | 312, 594, 930, 1011, 1524 |
| MunI | CAATTG | 1 cut(s) | 833 |
| Mva1269I | GAATGC | 1 cut(s) | 69 |
| MvaI | CCWGG | 1 cut(s) | 1524 |
| MvnI | CGCG | 1 cut(s) | 83 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 178, 572, 623, 632 |
| NciI | CCSGG | 4 cut(s) | 312, 594, 930, 1011 |
| NcoI | CCATGG | 3 cut(s) | 151, 162, 537 |
| NdeII | GATC | 4 cut(s) | 820, 904, 964, 1093 |
| NlaIII | CATG | 8 cut(s) | 155, 166, 217, 541, 776, 815, 905, 1303 |
| NlaIV | GGNNCC | 2 cut(s) | 884, 966 |
| NmeAIII | GCCGAG | 2 cut(s) | 542, 781 |
| NsiI | ATGCAT | 1 cut(s) | 71 |
| NspI | RCATGY | 1 cut(s) | 815 |
| PciSI | GCTCTTC | 1 cut(s) | 162 |
| PctI | GAATGC | 1 cut(s) | 69 |
| PdmI | GAANNNNTTC | 2 cut(s) | 362, 432 |
| PfeI | GAWTC | 3 cut(s) | 428, 769, 857 |
| PkrI | GCNGC | 8 cut(s) | 7, 58, 85, 88, 504, 601, 1002, 1377 |
| PleI | GAGTC | 3 cut(s) | 386, 522, 1325 |
| PpsI | GAGTC | 3 cut(s) | 386, 522, 1325 |
| Psp1406I | AACGTT | 1 cut(s) | 451 |
| Psp6I | CCWGG | 1 cut(s) | 1522 |
| PspGI | CCWGG | 1 cut(s) | 1522 |
| PspN4I | GGNNCC | 2 cut(s) | 884, 966 |
| PspPI | GGNCC | 2 cut(s) | 18, 776 |
| PsuI | RGATCY | 1 cut(s) | 964 |
| RsaI | GTAC | 1 cut(s) | 1134 |
| RsaNI | GTAC | 1 cut(s) | 1133 |
| RseI | CAYNNNNRTG | 3 cut(s) | 64, 245, 816 |
| SacII | CCGCGG | 1 cut(s) | 84 |
| SalI | GTCGAC | 1 cut(s) | 230 |
| SapI | GCTCTTC | 1 cut(s) | 162 |
| SaqAI | TTAA | 4 cut(s) | 24, 456, 1104, 1304 |
| SatI | GCNGC | 8 cut(s) | 6, 57, 84, 87, 503, 600, 1001, 1376 |
| Sau3AI | GATC | 4 cut(s) | 820, 904, 964, 1093 |
| Sau96I | GGNCC | 2 cut(s) | 18, 776 |
| SchI | GAGTC | 3 cut(s) | 387, 522, 1325 |
| ScrFI | CCNGG | 5 cut(s) | 312, 594, 930, 1011, 1524 |
| SduI | GDGCHC | 3 cut(s) | 628, 800, 1518 |
| SfaNI | GCATC | 3 cut(s) | 190, 417, 547 |
| Sfr303I | CCGCGG | 1 cut(s) | 84 |
| SgrBI | CCGCGG | 1 cut(s) | 84 |
| SinI | GGWCC | 2 cut(s) | 18, 776 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 64, 245, 816 |
| SmlI | CTYRAG | 2 cut(s) | 185, 388 |
| SmoI | CTYRAG | 2 cut(s) | 185, 388 |
| SsiI | CCGC | 7 cut(s) | 8, 57, 81, 83, 566, 961, 1287 |
| SspMI | CTAG | 3 cut(s) | 1248, 1440, 1494 |
| StyD4I | CCNGG | 5 cut(s) | 310, 592, 928, 1009, 1522 |
| StyI | CCWWGG | 7 cut(s) | 91, 151, 162, 537, 1404, 1410, 1467 |
| TaaI | ACNGT | 2 cut(s) | 319, 1258 |
| TaiI | ACGT | 1 cut(s) | 454 |
| TaqI | TCGA | 4 cut(s) | 111, 195, 209, 231 |
| TaqII | GACCGA | 1 cut(s) | 116 |
| TatI | WGTACW | 1 cut(s) | 1132 |
| TauI | GCSGC | 2 cut(s) | 59, 86 |
| TfiI | GAWTC | 3 cut(s) | 428, 769, 857 |
| Tru1I | TTAA | 4 cut(s) | 24, 456, 1104, 1304 |
| Tru9I | TTAA | 4 cut(s) | 24, 456, 1104, 1304 |
| TseI | GCWGC | 6 cut(s) | 5, 86, 502, 599, 1000, 1375 |
| TspDTI | ATGAA | 9 cut(s) | 120, 266, 353, 462, 506, 761, 779, 1277, 1425 |
| TspGWI | ACGGA | 2 cut(s) | 412, 1343 |
| VpaK11BI | GGWCC | 2 cut(s) | 18, 776 |
| XapI | RAATTY | 6 cut(s) | 107, 191, 708, 949, 1211, 1432 |
| XceI | RCATGY | 1 cut(s) | 815 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 954 |
| XmiI | GTMKAC | 1 cut(s) | 231 |
| XmnI | GAANNNNTTC | 2 cut(s) | 362, 432 |
| XspI | CTAG | 3 cut(s) | 1248, 1440, 1494 |
| Zsp2I | ATGCAT | 1 cut(s) | 71 |