RNA splicing
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 262 |
| AccB1I | GGYRCC | 2 cut(s) | 197, 371 |
| AciI | CCGC | 1 cut(s) | 96 |
| AfaI | GTAC | 1 cut(s) | 209 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 86, 194, 415 |
| AgsI | TTSAA | 5 cut(s) | 326, 336, 395, 497, 549 |
| AhlI | ACTAGT | 1 cut(s) | 59 |
| AjnI | CCWGG | 2 cut(s) | 503, 540 |
| AluBI | AGCT | 4 cut(s) | 159, 192, 401, 482 |
| AluI | AGCT | 4 cut(s) | 159, 192, 401, 482 |
| Alw21I | GWGCWC | 1 cut(s) | 25 |
| AoxI | GGCC | 2 cut(s) | 88, 97 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 528 |
| AspLEI | GCGC | 1 cut(s) | 55 |
| AspS9I | GGNCC | 4 cut(s) | 89, 98, 152, 500 |
| AsuHPI | GGTGA | 1 cut(s) | 452 |
| AvaII | GGWCC | 2 cut(s) | 152, 500 |
| BanI | GGYRCC | 2 cut(s) | 197, 371 |
| BanII | GRGCYC | 1 cut(s) | 80 |
| BbsI | GAAGAC | 1 cut(s) | 121 |
| Bbv12I | GWGCWC | 1 cut(s) | 25 |
| BbvCI | CCTCAGC | 1 cut(s) | 193 |
| BccI | CCATC | 1 cut(s) | 42 |
| BceAI | ACGGC | 1 cut(s) | 450 |
| BciT130I | CCWGG | 2 cut(s) | 505, 542 |
| BclI | TGATCA | 1 cut(s) | 302 |
| BcuI | ACTAGT | 1 cut(s) | 59 |
| BfaI | CTAG | 3 cut(s) | 43, 60, 223 |
| BfuAI | ACCTGC | 1 cut(s) | 262 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 96 |
| BglII | AGATCT | 1 cut(s) | 310 |
| BisI | GCNGC | 1 cut(s) | 97 |
| BlsI | GCNGC | 1 cut(s) | 98 |
| Bme1390I | CCNGG | 2 cut(s) | 505, 542 |
| Bme18I | GGWCC | 2 cut(s) | 152, 500 |
| BmgT120I | GGNCC | 4 cut(s) | 89, 98, 152, 500 |
| BmiI | GGNNCC | 4 cut(s) | 154, 199, 373, 502 |
| BmrFI | CCNGG | 2 cut(s) | 505, 542 |
| BmrI | ACTGGG | 1 cut(s) | 240 |
| BmsI | GCATC | 1 cut(s) | 370 |
| BmuI | ACTGGG | 1 cut(s) | 240 |
| BpiI | GAAGAC | 1 cut(s) | 121 |
| Bpu10I | CCTNAGC | 1 cut(s) | 193 |
| BsaJI | CCNNGG | 3 cut(s) | 12, 503, 504 |
| BsaWI | WCCGGW | 1 cut(s) | 200 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 86, 194, 415 |
| Bse1I | ACTGG | 1 cut(s) | 246 |
| BseBI | CCWGG | 2 cut(s) | 505, 542 |
| BseDI | CCNNGG | 3 cut(s) | 12, 503, 504 |
| BseGI | GGATG | 1 cut(s) | 146 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 86, 194, 415 |
| BseMII | CTCAG | 1 cut(s) | 184 |
| BseNI | ACTGG | 1 cut(s) | 246 |
| BseYI | CCCAGC | 1 cut(s) | 155 |
| BshFI | GGCC | 2 cut(s) | 90, 99 |
| BshNI | GGYRCC | 2 cut(s) | 197, 371 |
| BsiHKAI | GWGCWC | 1 cut(s) | 25 |
| BsiSI | CCGG | 1 cut(s) | 201 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 86, 194, 415 |
| BsnI | GGCC | 2 cut(s) | 90, 99 |
| Bsp1286I | GDGCHC | 2 cut(s) | 25, 80 |
| Bsp143I | GATC | 3 cut(s) | 302, 310, 352 |
| BspACI | CCGC | 1 cut(s) | 96 |
| BspANI | GGCC | 2 cut(s) | 90, 99 |
| BspCNI | CTCAG | 1 cut(s) | 185 |
| BspLI | GGNNCC | 4 cut(s) | 154, 199, 373, 502 |
| BspMI | ACCTGC | 1 cut(s) | 262 |
| BspT107I | GGYRCC | 2 cut(s) | 197, 371 |
| BsrI | ACTGG | 1 cut(s) | 246 |
| BssECI | CCNNGG | 3 cut(s) | 12, 503, 504 |
| BssMI | GATC | 3 cut(s) | 302, 310, 352 |
| BssT1I | CCWWGG | 1 cut(s) | 12 |
| Bst2UI | CCWGG | 2 cut(s) | 505, 542 |
| Bst4CI | ACNGT | 1 cut(s) | 458 |
| BstC8I | GCNNGC | 1 cut(s) | 25 |
| BstDEI | CTNAG | 2 cut(s) | 133, 193 |
| BstF5I | GGATG | 1 cut(s) | 146 |
| BstHHI | GCGC | 1 cut(s) | 55 |
| BstKTI | GATC | 3 cut(s) | 305, 313, 355 |
| BstMBI | GATC | 3 cut(s) | 302, 310, 352 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 96 |
| BstNI | CCWGG | 2 cut(s) | 505, 542 |
| BstNSI | RCATGY | 1 cut(s) | 347 |
| BstSCI | CCNGG | 2 cut(s) | 503, 540 |
| BstV2I | GAAGAC | 1 cut(s) | 121 |
| BstX2I | RGATCY | 1 cut(s) | 310 |
| BstYI | RGATCY | 1 cut(s) | 310 |
| BsuRI | GGCC | 2 cut(s) | 90, 99 |
| BtsCI | GGATG | 1 cut(s) | 146 |
| BveI | ACCTGC | 1 cut(s) | 262 |
| Cac8I | GCNNGC | 1 cut(s) | 25 |
| CfoI | GCGC | 1 cut(s) | 55 |
| Cfr13I | GGNCC | 4 cut(s) | 89, 98, 152, 500 |
| CsiI | ACCWGGT | 1 cut(s) | 540 |
| Csp6I | GTAC | 1 cut(s) | 208 |
| CviAII | CATG | 1 cut(s) | 344 |
| CviJI | RGCY | 9 cut(s) | 33, 78, 90, 99, 159, 192, 401, 465, 482 |
| CviKI_1 | RGCY | 9 cut(s) | 33, 78, 90, 99, 159, 192, 401, 465, 482 |
| CviQI | GTAC | 1 cut(s) | 208 |
| DdeI | CTNAG | 2 cut(s) | 133, 193 |
| DpnI | GATC | 3 cut(s) | 304, 312, 354 |
| DpnII | GATC | 3 cut(s) | 302, 310, 352 |
| Eco130I | CCWWGG | 1 cut(s) | 12 |
| Eco24I | GRGCYC | 1 cut(s) | 80 |
| Eco47I | GGWCC | 2 cut(s) | 152, 500 |
| EcoO109I | RGGNCCY | 2 cut(s) | 152, 500 |
| EcoRII | CCWGG | 2 cut(s) | 503, 540 |
| EcoT14I | CCWWGG | 1 cut(s) | 12 |
| EcoT38I | GRGCYC | 1 cut(s) | 80 |
| ErhI | CCWWGG | 1 cut(s) | 12 |
| FaeI | CATG | 1 cut(s) | 347 |
| FaiI | YATR | 7 cut(s) | 57, 82, 103, 258, 345, 404, 517 |
| FatI | CATG | 1 cut(s) | 343 |
| FbaI | TGATCA | 1 cut(s) | 302 |
| Fnu4HI | GCNGC | 1 cut(s) | 97 |
| FokI | GGATG | 1 cut(s) | 153 |
| FriOI | GRGCYC | 1 cut(s) | 80 |
| Fsp4HI | GCNGC | 1 cut(s) | 97 |
| FspBI | CTAG | 3 cut(s) | 43, 60, 223 |
| GlaI | GCGC | 1 cut(s) | 54 |
| GluI | GCNGC | 1 cut(s) | 97 |
| GsaI | CCCAGC | 1 cut(s) | 159 |
| HaeIII | GGCC | 2 cut(s) | 90, 99 |
| HapII | CCGG | 1 cut(s) | 201 |
| HhaI | GCGC | 1 cut(s) | 55 |
| Hin1II | CATG | 1 cut(s) | 347 |
| Hin6I | GCGC | 1 cut(s) | 53 |
| HinP1I | GCGC | 1 cut(s) | 53 |
| HincII | GTYRAC | 2 cut(s) | 65, 179 |
| HindII | GTYRAC | 2 cut(s) | 65, 179 |
| HpaII | CCGG | 1 cut(s) | 201 |
| HphI | GGTGA | 1 cut(s) | 452 |
| Hpy166II | GTNNAC | 3 cut(s) | 65, 179, 341 |
| Hpy188I | TCNGA | 1 cut(s) | 302 |
| Hpy188III | TCNNGA | 4 cut(s) | 306, 326, 392, 473 |
| Hpy8I | GTNNAC | 3 cut(s) | 65, 179, 341 |
| HpyAV | CCTTC | 8 cut(s) | 80, 131, 143, 198, 323, 389, 425, 491 |
| HpyCH4III | ACNGT | 1 cut(s) | 458 |
| HpyCH4IV | ACGT | 1 cut(s) | 118 |
| HpyCH4V | TGCA | 2 cut(s) | 361, 406 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 96 |
| HpyF3I | CTNAG | 2 cut(s) | 133, 193 |
| HpySE526I | ACGT | 1 cut(s) | 118 |
| Hsp92II | CATG | 1 cut(s) | 347 |
| HspAI | GCGC | 1 cut(s) | 53 |
| Ksp22I | TGATCA | 1 cut(s) | 302 |
| Kzo9I | GATC | 3 cut(s) | 302, 310, 352 |
| LmnI | GCTCC | 1 cut(s) | 398 |
| LweI | GCATC | 1 cut(s) | 370 |
| MabI | ACCWGGT | 1 cut(s) | 540 |
| MaeI | CTAG | 3 cut(s) | 43, 60, 223 |
| MaeII | ACGT | 1 cut(s) | 118 |
| MaeIII | GTNAC | 1 cut(s) | 534 |
| MalI | GATC | 3 cut(s) | 304, 312, 354 |
| MboI | GATC | 3 cut(s) | 302, 310, 352 |
| MboII | GAAGA | 5 cut(s) | 120, 123, 126, 299, 314 |
| MflI | RGATCY | 1 cut(s) | 310 |
| MhlI | GDGCHC | 2 cut(s) | 25, 80 |
| MluCI | AATT | 1 cut(s) | 211 |
| MnlI | CCTC | 6 cut(s) | 79, 119, 188, 409, 428, 469 |
| MseI | TTAA | 1 cut(s) | 235 |
| MspI | CCGG | 1 cut(s) | 201 |
| MspR9I | CCNGG | 2 cut(s) | 505, 542 |
| MvaI | CCWGG | 2 cut(s) | 505, 542 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 96 |
| NdeII | GATC | 3 cut(s) | 302, 310, 352 |
| NlaIII | CATG | 1 cut(s) | 347 |
| NlaIV | GGNNCC | 4 cut(s) | 154, 199, 373, 502 |
| NmuCI | GTSAC | 1 cut(s) | 534 |
| NspI | RCATGY | 1 cut(s) | 347 |
| PasI | CCCWGGG | 1 cut(s) | 504 |
| PkrI | GCNGC | 1 cut(s) | 98 |
| PpuMI | RGGWCCY | 2 cut(s) | 152, 500 |
| Psp5II | RGGWCCY | 2 cut(s) | 152, 500 |
| Psp6I | CCWGG | 2 cut(s) | 503, 540 |
| PspFI | CCCAGC | 1 cut(s) | 155 |
| PspGI | CCWGG | 2 cut(s) | 503, 540 |
| PspN4I | GGNNCC | 4 cut(s) | 154, 199, 373, 502 |
| PspPI | GGNCC | 4 cut(s) | 89, 98, 152, 500 |
| PspPPI | RGGWCCY | 2 cut(s) | 152, 500 |
| PsuI | RGATCY | 1 cut(s) | 310 |
| RsaI | GTAC | 1 cut(s) | 209 |
| RsaNI | GTAC | 1 cut(s) | 208 |
| SaqAI | TTAA | 1 cut(s) | 235 |
| SatI | GCNGC | 1 cut(s) | 97 |
| Sau3AI | GATC | 3 cut(s) | 302, 310, 352 |
| Sau96I | GGNCC | 4 cut(s) | 89, 98, 152, 500 |
| ScrFI | CCNGG | 2 cut(s) | 505, 542 |
| SduI | GDGCHC | 2 cut(s) | 25, 80 |
| SexAI | ACCWGGT | 1 cut(s) | 540 |
| SfaNI | GCATC | 1 cut(s) | 370 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 96 |
| SinI | GGWCC | 2 cut(s) | 152, 500 |
| SpeI | ACTAGT | 1 cut(s) | 59 |
| Sse9I | AATT | 1 cut(s) | 211 |
| SsiI | CCGC | 1 cut(s) | 96 |
| SspMI | CTAG | 3 cut(s) | 43, 60, 223 |
| StyD4I | CCNGG | 2 cut(s) | 503, 540 |
| StyI | CCWWGG | 1 cut(s) | 12 |
| TaaI | ACNGT | 1 cut(s) | 458 |
| TaiI | ACGT | 1 cut(s) | 121 |
| TaqI | TCGA | 1 cut(s) | 355 |
| TasI | AATT | 1 cut(s) | 211 |
| TauI | GCSGC | 1 cut(s) | 99 |
| Tru1I | TTAA | 1 cut(s) | 235 |
| Tru9I | TTAA | 1 cut(s) | 235 |
| TseFI | GTSAC | 1 cut(s) | 534 |
| Tsp45I | GTSAC | 1 cut(s) | 534 |
| TspDTI | ATGAA | 1 cut(s) | 121 |
| VpaK11BI | GGWCC | 2 cut(s) | 152, 500 |
| XceI | RCATGY | 1 cut(s) | 347 |
| XspI | CTAG | 3 cut(s) | 43, 60, 223 |