protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 74 - 234 | 1.4e-31 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 297 - 395 | 7.2e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 322 - 425 | 3.2e-37 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 528 - 584 | 1.1e-11 | Integrase zinc binding domain |
| rve | PF00665 | 605 - 698 | 5.7e-17 | Integrase core domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 378, 2421 |
| AarI | CACCTGC | 2 cut(s) | 151, 1563 |
| Acc36I | ACCTGC | 2 cut(s) | 151, 1563 |
| Acc65I | GGTACC | 1 cut(s) | 2473 |
| AccB1I | GGYRCC | 4 cut(s) | 166, 958, 1740, 2473 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 667, 1750 |
| AccI | GTMKAC | 1 cut(s) | 767 |
| AccII | CGCG | 1 cut(s) | 1990 |
| AccIII | TCCGGA | 1 cut(s) | 179 |
| AciI | CCGC | 2 cut(s) | 1127, 1988 |
| AclWI | GGATC | 5 cut(s) | 38, 978, 1249, 1262, 1526 |
| AcoI | YGGCCR | 1 cut(s) | 1691 |
| AcsI | RAATTY | 5 cut(s) | 384, 1271, 2326, 2415, 2618 |
| AcuI | CTGAAG | 1 cut(s) | 2477 |
| AcyI | GRCGYC | 1 cut(s) | 55 |
| AfaI | GTAC | 4 cut(s) | 687, 1538, 2475, 2614 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 667, 1737, 1750 |
| AflIII | ACRYGT | 1 cut(s) | 425 |
| AjnI | CCWGG | 2 cut(s) | 2504, 2521 |
| Alw21I | GWGCWC | 1 cut(s) | 216 |
| Alw26I | GTCTC | 6 cut(s) | 596, 1585, 1857, 1897, 2080, 2247 |
| AlwI | GGATC | 5 cut(s) | 38, 978, 1249, 1262, 1526 |
| Aor13HI | TCCGGA | 1 cut(s) | 179 |
| AoxI | GGCC | 2 cut(s) | 337, 1691 |
| ApeKI | GCWGC | 5 cut(s) | 26, 1030, 1199, 1396, 2039 |
| ApoI | RAATTY | 5 cut(s) | 384, 1271, 2326, 2415, 2618 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1777, 1809 |
| AseI | ATTAAT | 2 cut(s) | 743, 1374 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 81, 1383 |
| Asp718I | GGTACC | 1 cut(s) | 2473 |
| AspS9I | GGNCC | 5 cut(s) | 1074, 1302, 1838, 1923, 2549 |
| AsuHPI | GGTGA | 9 cut(s) | 160, 682, 1189, 1316, 1462, 1600, 2200, 2638, 2681 |
| AsuII | TTCGAA | 3 cut(s) | 749, 981, 2120 |
| AvaII | GGWCC | 5 cut(s) | 1074, 1302, 1838, 1923, 2549 |
| BaeGI | GKGCMC | 1 cut(s) | 961 |
| BalI | TGGCCA | 1 cut(s) | 1693 |
| BamHI | GGATCC | 1 cut(s) | 1254 |
| BanI | GGYRCC | 4 cut(s) | 166, 958, 1740, 2473 |
| BanII | GRGCYC | 1 cut(s) | 216 |
| BbsI | GAAGAC | 2 cut(s) | 505, 2435 |
| Bbv12I | GWGCWC | 1 cut(s) | 216 |
| BbvI | GCAGC | 5 cut(s) | 38, 1042, 1211, 1408, 2051 |
| BccI | CCATC | 6 cut(s) | 356, 606, 1245, 1352, 1702, 2097 |
| BciT130I | CCWGG | 2 cut(s) | 2506, 2523 |
| BclI | TGATCA | 6 cut(s) | 313, 1192, 1321, 1338, 1558, 1930 |
| BcoDI | GTCTC | 6 cut(s) | 596, 1585, 1857, 1897, 2080, 2247 |
| BfaI | CTAG | 1 cut(s) | 39 |
| BfmI | CTRYAG | 3 cut(s) | 259, 768, 1506 |
| BfuAI | ACCTGC | 2 cut(s) | 151, 1563 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2309 |
| BisI | GCNGC | 5 cut(s) | 27, 1031, 1200, 1397, 2040 |
| BlsI | GCNGC | 5 cut(s) | 28, 1032, 1201, 1398, 2041 |
| Bme1390I | CCNGG | 2 cut(s) | 2506, 2523 |
| Bme18I | GGWCC | 5 cut(s) | 1074, 1302, 1838, 1923, 2549 |
| BmgT120I | GGNCC | 5 cut(s) | 1074, 1302, 1838, 1923, 2549 |
| BmrFI | CCNGG | 2 cut(s) | 2506, 2523 |
| BpiI | GAAGAC | 2 cut(s) | 505, 2435 |
| BpmI | CTGGAG | 3 cut(s) | 381, 465, 2488 |
| Bpu10I | CCTNAGC | 1 cut(s) | 732 |
| Bpu14I | TTCGAA | 3 cut(s) | 749, 981, 2120 |
| BpuEI | CTTGAG | 3 cut(s) | 1301, 1649, 2165 |
| BsaBI | GATNNNNATC | 1 cut(s) | 969 |
| BsaHI | GRCGYC | 1 cut(s) | 55 |
| BsaJI | CCNNGG | 1 cut(s) | 1421 |
| BsaWI | WCCGGW | 2 cut(s) | 179, 961 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 235, 265 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 667, 1737, 1750 |
| Bse118I | RCCGGY | 1 cut(s) | 1465 |
| Bse1I | ACTGG | 2 cut(s) | 155, 2551 |
| Bse8I | GATNNNNATC | 1 cut(s) | 969 |
| BseAI | TCCGGA | 1 cut(s) | 179 |
| BseBI | CCWGG | 2 cut(s) | 2506, 2523 |
| BseDI | CCNNGG | 1 cut(s) | 1421 |
| BseGI | GGATG | 6 cut(s) | 367, 822, 1534, 1714, 2089, 2386 |
| BseJI | GATNNNNATC | 1 cut(s) | 969 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 667, 1737, 1750 |
| BseMII | CTCAG | 3 cut(s) | 576, 1937, 2522 |
| BseNI | ACTGG | 2 cut(s) | 155, 2551 |
| BseRI | GAGGAG | 2 cut(s) | 750, 1753 |
| BseSI | GKGCMC | 1 cut(s) | 961 |
| BseXI | GCAGC | 5 cut(s) | 38, 1042, 1211, 1408, 2051 |
| BsgI | GTGCAG | 2 cut(s) | 108, 179 |
| Bsh1236I | CGCG | 1 cut(s) | 1990 |
| BshFI | GGCC | 2 cut(s) | 339, 1693 |
| BshNI | GGYRCC | 4 cut(s) | 166, 958, 1740, 2473 |
| BsiHKAI | GWGCWC | 1 cut(s) | 216 |
| BsiSI | CCGG | 3 cut(s) | 180, 962, 1466 |
| BslFI | GGGAC | 1 cut(s) | 1315 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 667, 1737, 1750 |
| BsmAI | GTCTC | 6 cut(s) | 596, 1585, 1857, 1897, 2080, 2247 |
| BsmBI | CGTCTC | 1 cut(s) | 1897 |
| BsmFI | GGGAC | 1 cut(s) | 1315 |
| BsmI | GAATGC | 3 cut(s) | 462, 2334, 2413 |
| BsnI | GGCC | 2 cut(s) | 339, 1693 |
| Bsp119I | TTCGAA | 3 cut(s) | 749, 981, 2120 |
| Bsp1286I | GDGCHC | 2 cut(s) | 216, 961 |
| Bsp13I | TCCGGA | 1 cut(s) | 179 |
| BspACI | CCGC | 2 cut(s) | 1127, 1988 |
| BspANI | GGCC | 2 cut(s) | 339, 1693 |
| BspCNI | CTCAG | 3 cut(s) | 575, 1938, 2523 |
| BspEI | TCCGGA | 1 cut(s) | 179 |
| BspFNI | CGCG | 1 cut(s) | 1990 |
| BspHI | TCATGA | 4 cut(s) | 1585, 2046, 2338, 2443 |
| BspMI | ACCTGC | 2 cut(s) | 151, 1563 |
| BspPI | GGATC | 5 cut(s) | 38, 978, 1249, 1262, 1526 |
| BspQI | GCTCTTC | 1 cut(s) | 1406 |
| BspT104I | TTCGAA | 3 cut(s) | 749, 981, 2120 |
| BspT107I | GGYRCC | 4 cut(s) | 166, 958, 1740, 2473 |
| BsrFI | RCCGGY | 1 cut(s) | 1465 |
| BsrI | ACTGG | 2 cut(s) | 155, 2551 |
| BssAI | RCCGGY | 1 cut(s) | 1465 |
| BssECI | CCNNGG | 1 cut(s) | 1421 |
| BssNI | GRCGYC | 1 cut(s) | 55 |
| BssT1I | CCWWGG | 1 cut(s) | 1421 |
| Bst2UI | CCWGG | 2 cut(s) | 2506, 2523 |
| Bst4CI | ACNGT | 9 cut(s) | 190, 232, 353, 621, 772, 1510, 2155, 2168, 2553 |
| Bst6I | CTCTTC | 3 cut(s) | 198, 891, 1406 |
| BstACI | GRCGYC | 1 cut(s) | 55 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 166 |
| BstBI | TTCGAA | 3 cut(s) | 749, 981, 2120 |
| BstC8I | GCNNGC | 5 cut(s) | 337, 801, 805, 1125, 1992 |
| BstDEI | CTNAG | 8 cut(s) | 16, 562, 607, 732, 1173, 1205, 1946, 2531 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1735 |
| BstF5I | GGATG | 6 cut(s) | 367, 822, 1534, 1714, 2089, 2386 |
| BstFNI | CGCG | 1 cut(s) | 1990 |
| BstMAI | GTCTC | 6 cut(s) | 596, 1585, 1857, 1897, 2080, 2247 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 166, 875, 1016, 2204, 2309 |
| BstNI | CCWGG | 2 cut(s) | 2506, 2523 |
| BstNSI | RCATGY | 4 cut(s) | 429, 803, 944, 1632 |
| BstSCI | CCNGG | 2 cut(s) | 2504, 2521 |
| BstSFI | CTRYAG | 3 cut(s) | 259, 768, 1506 |
| BstSLI | GKGCMC | 1 cut(s) | 961 |
| BstUI | CGCG | 1 cut(s) | 1990 |
| BstV1I | GCAGC | 5 cut(s) | 38, 1042, 1211, 1408, 2051 |
| BstV2I | GAAGAC | 2 cut(s) | 505, 2435 |
| BstX2I | RGATCY | 3 cut(s) | 43, 970, 1254 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2102, 2470 |
| BstYI | RGATCY | 3 cut(s) | 43, 970, 1254 |
| BsuRI | GGCC | 2 cut(s) | 339, 1693 |
| BtgZI | GCGATG | 1 cut(s) | 1371 |
| BtsCI | GGATG | 6 cut(s) | 367, 822, 1534, 1714, 2089, 2386 |
| BtsI | GCAGTG | 1 cut(s) | 1910 |
| BtsIMutI | CAGTG | 6 cut(s) | 162, 195, 1515, 1910, 2160, 2671 |
| BveI | ACCTGC | 2 cut(s) | 151, 1563 |
| Cac8I | GCNNGC | 5 cut(s) | 337, 801, 805, 1125, 1992 |
| CciI | TCATGA | 4 cut(s) | 1585, 2046, 2338, 2443 |
| Cfr10I | RCCGGY | 1 cut(s) | 1465 |
| Cfr13I | GGNCC | 5 cut(s) | 1074, 1302, 1838, 1923, 2549 |
| CseI | GACGC | 1 cut(s) | 63 |
| Csp6I | GTAC | 4 cut(s) | 686, 1537, 2474, 2613 |
| CviQI | GTAC | 4 cut(s) | 686, 1537, 2474, 2613 |
| DdeI | CTNAG | 8 cut(s) | 16, 562, 607, 732, 1173, 1205, 1946, 2531 |
| DraI | TTTAAA | 3 cut(s) | 645, 1476, 2224 |
| EaeI | YGGCCR | 1 cut(s) | 1691 |
| Eam1104I | CTCTTC | 3 cut(s) | 198, 891, 1406 |
| EarI | CTCTTC | 3 cut(s) | 198, 891, 1406 |
| Ecl136II | GAGCTC | 1 cut(s) | 214 |
| Eco130I | CCWWGG | 1 cut(s) | 1421 |
| Eco24I | GRGCYC | 1 cut(s) | 216 |
| Eco47I | GGWCC | 5 cut(s) | 1074, 1302, 1838, 1923, 2549 |
| Eco53kI | GAGCTC | 1 cut(s) | 214 |
| Eco57I | CTGAAG | 1 cut(s) | 2477 |
| EcoICRI | GAGCTC | 1 cut(s) | 214 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1735 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1074 |
| EcoRII | CCWGG | 2 cut(s) | 2504, 2521 |
| EcoT14I | CCWWGG | 1 cut(s) | 1421 |
| EcoT22I | ATGCAT | 4 cut(s) | 6, 503, 1630, 1714 |
| EcoT38I | GRGCYC | 1 cut(s) | 216 |
| ErhI | CCWWGG | 1 cut(s) | 1421 |
| Esp3I | CGTCTC | 1 cut(s) | 1897 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1107, 1139, 1481, 1513, 1505, 1537 |
| FaqI | GGGAC | 1 cut(s) | 1315 |
| FauNDI | CATATG | 1 cut(s) | 1624 |
| FbaI | TGATCA | 6 cut(s) | 313, 1192, 1321, 1338, 1558, 1930 |
| FblI | GTMKAC | 1 cut(s) | 767 |
| Fnu4HI | GCNGC | 5 cut(s) | 27, 1031, 1200, 1397, 2040 |
| FokI | GGATG | 6 cut(s) | 374, 809, 1541, 1721, 2076, 2393 |
| FriOI | GRGCYC | 1 cut(s) | 216 |
| Fsp4HI | GCNGC | 5 cut(s) | 27, 1031, 1200, 1397, 2040 |
| FspBI | CTAG | 1 cut(s) | 39 |
| GluI | GCNGC | 5 cut(s) | 27, 1031, 1200, 1397, 2040 |
| GsuI | CTGGAG | 3 cut(s) | 381, 465, 2488 |
| HaeIII | GGCC | 2 cut(s) | 339, 1693 |
| HapII | CCGG | 3 cut(s) | 180, 962, 1466 |
| HgaI | GACGC | 1 cut(s) | 63 |
| Hin1I | GRCGYC | 1 cut(s) | 55 |
| HincII | GTYRAC | 1 cut(s) | 1411 |
| HindII | GTYRAC | 1 cut(s) | 1411 |
| HindIII | AAGCTT | 4 cut(s) | 752, 1043, 2360, 2397 |
| HinfI | GANTC | 6 cut(s) | 151, 819, 1366, 1824, 2158, 2657 |
| HpaII | CCGG | 3 cut(s) | 180, 962, 1466 |
| HphI | GGTGA | 9 cut(s) | 160, 682, 1189, 1316, 1462, 1600, 2200, 2638, 2681 |
| Hpy166II | GTNNAC | 4 cut(s) | 768, 1411, 1441, 2544 |
| Hpy188I | TCNGA | 9 cut(s) | 136, 318, 467, 520, 1003, 1192, 1558, 1947, 2457 |
| Hpy8I | GTNNAC | 4 cut(s) | 768, 1411, 1441, 2544 |
| Hpy99I | CGWCG | 3 cut(s) | 456, 1817, 2009 |
| HpyAV | CCTTC | 5 cut(s) | 451, 499, 670, 901, 1427 |
| HpyCH4III | ACNGT | 9 cut(s) | 190, 232, 353, 621, 772, 1510, 2155, 2168, 2553 |
| HpyCH4IV | ACGT | 2 cut(s) | 1815, 1890 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 166, 875, 1016, 2204, 2309 |
| HpyF3I | CTNAG | 8 cut(s) | 16, 562, 607, 732, 1173, 1205, 1946, 2531 |
| HpySE526I | ACGT | 2 cut(s) | 1815, 1890 |
| Hsp92I | GRCGYC | 1 cut(s) | 55 |
| Kpn2I | TCCGGA | 1 cut(s) | 179 |
| KpnI | GGTACC | 1 cut(s) | 2477 |
| Ksp22I | TGATCA | 6 cut(s) | 313, 1192, 1321, 1338, 1558, 1930 |
| LguI | GCTCTTC | 1 cut(s) | 1406 |
| LmnI | GCTCC | 8 cut(s) | 325, 400, 484, 1016, 1646, 1960, 2293, 2582 |
| Lsp1109I | GCAGC | 5 cut(s) | 38, 1042, 1211, 1408, 2051 |
| MaeI | CTAG | 1 cut(s) | 39 |
| MaeII | ACGT | 2 cut(s) | 1815, 1890 |
| MaeIII | GTNAC | 5 cut(s) | 232, 344, 1177, 1363, 1723 |
| MflI | RGATCY | 3 cut(s) | 43, 970, 1254 |
| MhlI | GDGCHC | 2 cut(s) | 216, 961 |
| MlsI | TGGCCA | 1 cut(s) | 1693 |
| MluNI | TGGCCA | 1 cut(s) | 1693 |
| MlyI | GAGTC | 4 cut(s) | 160, 1360, 2167, 2666 |
| MmeI | TCCRAC | 6 cut(s) | 94, 221, 303, 543, 2271, 2358 |
| Mox20I | TGGCCA | 1 cut(s) | 1693 |
| Mph1103I | ATGCAT | 4 cut(s) | 6, 503, 1630, 1714 |
| MroI | TCCGGA | 1 cut(s) | 179 |
| MroXI | GAANNNNTTC | 2 cut(s) | 81, 1383 |
| MscI | TGGCCA | 1 cut(s) | 1693 |
| MslI | CAYNNNNRTG | 3 cut(s) | 424, 1623, 1627 |
| Msp20I | TGGCCA | 1 cut(s) | 1693 |
| MspI | CCGG | 3 cut(s) | 180, 962, 1466 |
| MspR9I | CCNGG | 2 cut(s) | 2506, 2523 |
| Mva1269I | GAATGC | 3 cut(s) | 462, 2334, 2413 |
| MvaI | CCWGG | 2 cut(s) | 2506, 2523 |
| MvnI | CGCG | 1 cut(s) | 1990 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 166, 875, 1016, 2204, 2309 |
| NdeI | CATATG | 1 cut(s) | 1624 |
| NmuCI | GTSAC | 4 cut(s) | 232, 344, 1177, 1363 |
| NsiI | ATGCAT | 4 cut(s) | 6, 503, 1630, 1714 |
| NspI | RCATGY | 4 cut(s) | 429, 803, 944, 1632 |
| NspV | TTCGAA | 3 cut(s) | 749, 981, 2120 |
| PaeI | GCATGC | 1 cut(s) | 803 |
| PagI | TCATGA | 4 cut(s) | 1585, 2046, 2338, 2443 |
| PaqCI | CACCTGC | 2 cut(s) | 151, 1563 |
| PciI | ACATGT | 1 cut(s) | 425 |
| PciSI | GCTCTTC | 1 cut(s) | 1406 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1809 |
| PctI | GAATGC | 3 cut(s) | 462, 2334, 2413 |
| PdmI | GAANNNNTTC | 2 cut(s) | 81, 1383 |
| PfeI | GAWTC | 2 cut(s) | 819, 1824 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 667, 1750 |
| PkrI | GCNGC | 5 cut(s) | 28, 1032, 1201, 1398, 2041 |
| PleI | GAGTC | 4 cut(s) | 159, 1360, 2166, 2665 |
| PpsI | GAGTC | 4 cut(s) | 159, 1360, 2166, 2665 |
| PpuMI | RGGWCCY | 1 cut(s) | 1074 |
| PscI | ACATGT | 1 cut(s) | 425 |
| PshBI | ATTAAT | 2 cut(s) | 743, 1374 |
| PsiI | TTATAA | 2 cut(s) | 378, 2421 |
| Psp124BI | GAGCTC | 1 cut(s) | 216 |
| Psp5II | RGGWCCY | 1 cut(s) | 1074 |
| Psp6I | CCWGG | 2 cut(s) | 2504, 2521 |
| PspGI | CCWGG | 2 cut(s) | 2504, 2521 |
| PspPI | GGNCC | 5 cut(s) | 1074, 1302, 1838, 1923, 2549 |
| PspPPI | RGGWCCY | 1 cut(s) | 1074 |
| PsuI | RGATCY | 3 cut(s) | 43, 970, 1254 |
| RsaI | GTAC | 4 cut(s) | 687, 1538, 2475, 2614 |
| RsaNI | GTAC | 4 cut(s) | 686, 1537, 2474, 2613 |
| RseI | CAYNNNNRTG | 3 cut(s) | 424, 1623, 1627 |
| SacI | GAGCTC | 1 cut(s) | 216 |
| SapI | GCTCTTC | 1 cut(s) | 1406 |
| SatI | GCNGC | 5 cut(s) | 27, 1031, 1200, 1397, 2040 |
| Sau96I | GGNCC | 5 cut(s) | 1074, 1302, 1838, 1923, 2549 |
| SchI | GAGTC | 4 cut(s) | 160, 1360, 2167, 2666 |
| ScrFI | CCNGG | 2 cut(s) | 2506, 2523 |
| SduI | GDGCHC | 2 cut(s) | 216, 961 |
| SfcI | CTRYAG | 3 cut(s) | 259, 768, 1506 |
| SfuI | TTCGAA | 3 cut(s) | 749, 981, 2120 |
| SinI | GGWCC | 5 cut(s) | 1074, 1302, 1838, 1923, 2549 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 424, 1623, 1627 |
| SmlI | CTYRAG | 3 cut(s) | 1280, 1664, 2144 |
| SmoI | CTYRAG | 3 cut(s) | 1280, 1664, 2144 |
| SphI | GCATGC | 1 cut(s) | 803 |
| SsiI | CCGC | 2 cut(s) | 1127, 1988 |
| SspI | AATATT | 4 cut(s) | 12, 1185, 1382, 1792 |
| SspMI | CTAG | 1 cut(s) | 39 |
| SstI | GAGCTC | 1 cut(s) | 216 |
| StyD4I | CCNGG | 2 cut(s) | 2504, 2521 |
| StyI | CCWWGG | 1 cut(s) | 1421 |
| TaaI | ACNGT | 9 cut(s) | 190, 232, 353, 621, 772, 1510, 2155, 2168, 2553 |
| TaiI | ACGT | 2 cut(s) | 1818, 1893 |
| TaqII | GACCGA | 2 cut(s) | 774, 1319 |
| TatI | WGTACW | 1 cut(s) | 685 |
| TfiI | GAWTC | 2 cut(s) | 819, 1824 |
| TscAI | CASTG | 6 cut(s) | 162, 195, 1515, 1917, 2160, 2671 |
| TseFI | GTSAC | 4 cut(s) | 232, 344, 1177, 1363 |
| TseI | GCWGC | 5 cut(s) | 26, 1030, 1199, 1396, 2039 |
| Tsp45I | GTSAC | 4 cut(s) | 232, 344, 1177, 1363 |
| TspGWI | ACGGA | 4 cut(s) | 753, 1524, 2022, 2404 |
| TspRI | CASTG | 6 cut(s) | 162, 195, 1515, 1917, 2160, 2671 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 667, 1750 |
| VpaK11BI | GGWCC | 5 cut(s) | 1074, 1302, 1838, 1923, 2549 |
| VspI | ATTAAT | 2 cut(s) | 743, 1374 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1735 |
| XapI | RAATTY | 5 cut(s) | 384, 1271, 2326, 2415, 2618 |
| XceI | RCATGY | 4 cut(s) | 429, 803, 944, 1632 |
| XmiI | GTMKAC | 1 cut(s) | 767 |
| XmnI | GAANNNNTTC | 2 cut(s) | 81, 1383 |
| XspI | CTAG | 1 cut(s) | 39 |
| Zsp2I | ATGCAT | 4 cut(s) | 6, 503, 1630, 1714 |