protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 362 - 516 | 4.8e-29 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 580 - 678 | 2e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 605 - 708 | 8.2e-38 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 812 - 869 | 2.2e-10 | Integrase zinc binding domain |
| rve | PF00665 | 890 - 983 | 1.6e-16 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3416 |
| Acc65I | GGTACC | 2 cut(s) | 1015, 1066 |
| AccB1I | GGYRCC | 4 cut(s) | 652, 1015, 1066, 3541 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 807, 1171, 1516, 1885 |
| AccII | CGCG | 1 cut(s) | 1916 |
| AccIII | TCCGGA | 1 cut(s) | 2320 |
| AciI | CCGC | 8 cut(s) | 71, 146, 1052, 1125, 2285, 2966, 3197, 3566 |
| AclI | AACGTT | 1 cut(s) | 1345 |
| AclWI | GGATC | 6 cut(s) | 81, 690, 1020, 1146, 1238, 2267 |
| AcoI | YGGCCR | 2 cut(s) | 2364, 2959 |
| AcsI | RAATTY | 5 cut(s) | 272, 2212, 2316, 2447, 3270 |
| AcuI | CTGAAG | 2 cut(s) | 1700, 1809 |
| AcvI | CACGTG | 1 cut(s) | 2336 |
| AflII | CTTAAG | 2 cut(s) | 26, 947 |
| AflIII | ACRYGT | 4 cut(s) | 1130, 1274, 1914, 2333 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3341 |
| AhlI | ACTAGT | 1 cut(s) | 454 |
| AjnI | CCWGG | 1 cut(s) | 3376 |
| AleI | CACNNNNGTG | 1 cut(s) | 1619 |
| Alw21I | GWGCWC | 6 cut(s) | 42, 419, 543, 792, 2341, 3038 |
| Alw26I | GTCTC | 6 cut(s) | 517, 710, 1923, 2752, 2935, 3102 |
| AlwI | GGATC | 6 cut(s) | 81, 690, 1020, 1146, 1238, 2267 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 557 |
| Aor13HI | TCCGGA | 1 cut(s) | 2320 |
| ApaI | GGGCCC | 1 cut(s) | 2621 |
| ApeKI | GCWGC | 4 cut(s) | 557, 1757, 2048, 3217 |
| ApoI | RAATTY | 5 cut(s) | 272, 2212, 2316, 2447, 3270 |
| Asp718I | GGTACC | 2 cut(s) | 1015, 1066 |
| AspLEI | GCGC | 2 cut(s) | 1668, 3369 |
| AspS9I | GGNCC | 9 cut(s) | 258, 1252, 1876, 2547, 2617, 2618, 2693, 3014, 3404 |
| AsuC2I | CCSGG | 2 cut(s) | 1087, 2776 |
| AsuHPI | GGTGA | 9 cut(s) | 47, 49, 1009, 1027, 2299, 2368, 3122, 3215, 3493 |
| AvaII | GGWCC | 4 cut(s) | 258, 1252, 2693, 3014 |
| AxyI | CCTNAGG | 1 cut(s) | 93 |
| BaeGI | GKGCMC | 3 cut(s) | 1731, 2621, 3546 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 39, 72 |
| BalI | TGGCCA | 2 cut(s) | 2366, 2961 |
| BanI | GGYRCC | 4 cut(s) | 652, 1015, 1066, 3541 |
| BanII | GRGCYC | 5 cut(s) | 42, 543, 1004, 2621, 3038 |
| BbrPI | CACGTG | 1 cut(s) | 2336 |
| BbsI | GAAGAC | 4 cut(s) | 1268, 1387, 2516, 3011 |
| Bbv12I | GWGCWC | 6 cut(s) | 42, 419, 543, 792, 2341, 3038 |
| BbvI | GCAGC | 4 cut(s) | 544, 1744, 2060, 3204 |
| BceAI | ACGGC | 1 cut(s) | 1294 |
| BciT130I | CCWGG | 1 cut(s) | 3378 |
| BciVI | GTATCC | 6 cut(s) | 40, 330, 370, 1208, 1217, 1471 |
| BclI | TGATCA | 1 cut(s) | 3309 |
| BcnI | CCSGG | 2 cut(s) | 1087, 2776 |
| BcoDI | GTCTC | 6 cut(s) | 517, 710, 1923, 2752, 2935, 3102 |
| BcuI | ACTAGT | 1 cut(s) | 454 |
| BfaI | CTAG | 5 cut(s) | 455, 956, 2844, 3264, 3393 |
| BfmI | CTRYAG | 3 cut(s) | 81, 1660, 1977 |
| BfoI | RGCGCY | 1 cut(s) | 1669 |
| BfrI | CTTAAG | 2 cut(s) | 26, 947 |
| BfuI | GTATCC | 6 cut(s) | 40, 330, 370, 1208, 1217, 1471 |
| BglII | AGATCT | 1 cut(s) | 1588 |
| BisI | GCNGC | 5 cut(s) | 558, 1758, 2049, 3198, 3218 |
| BlpI | GCTNAGC | 1 cut(s) | 1938 |
| BlsI | GCNGC | 5 cut(s) | 559, 1759, 2050, 3199, 3219 |
| Bme1390I | CCNGG | 3 cut(s) | 1087, 2776, 3378 |
| Bme18I | GGWCC | 4 cut(s) | 258, 1252, 2693, 3014 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3341 |
| BmgT120I | GGNCC | 9 cut(s) | 258, 1252, 1876, 2547, 2617, 2618, 2693, 3014, 3404 |
| BmrFI | CCNGG | 3 cut(s) | 1087, 2776, 3378 |
| BpiI | GAAGAC | 4 cut(s) | 1268, 1387, 2516, 3011 |
| Bpu10I | CCTNAGC | 4 cut(s) | 174, 1557, 2177, 3288 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1938 |
| BpuMI | CCSGG | 2 cut(s) | 1087, 2776 |
| Bsa29I | ATCGAT | 2 cut(s) | 1242, 2884 |
| BsaAI | YACGTR | 3 cut(s) | 1133, 1275, 2336 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1238, 1482, 1818 |
| BsaI | GGTCTC | 2 cut(s) | 517, 2935 |
| BsaJI | CCNNGG | 5 cut(s) | 506, 1248, 2087, 2276, 3376 |
| BsaWI | WCCGGW | 2 cut(s) | 1810, 2320 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1777, 1807 |
| Bse118I | RCCGGY | 2 cut(s) | 724, 1330 |
| Bse1I | ACTGG | 2 cut(s) | 481, 3137 |
| Bse21I | CCTNAGG | 1 cut(s) | 93 |
| Bse3DI | GCAATG | 5 cut(s) | 674, 719, 813, 2404, 3253 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1238, 1482, 1818 |
| BseAI | TCCGGA | 1 cut(s) | 2320 |
| BseBI | CCWGG | 1 cut(s) | 3378 |
| BseCI | ATCGAT | 2 cut(s) | 1242, 2884 |
| BseDI | CCNNGG | 5 cut(s) | 506, 1248, 2087, 2276, 3376 |
| BseGI | GGATG | 7 cut(s) | 839, 1311, 2109, 2389, 2569, 2944, 3099 |
| BseJI | GATNNNNATC | 3 cut(s) | 1238, 1482, 1818 |
| BseMI | GCAATG | 5 cut(s) | 674, 719, 813, 2404, 3253 |
| BseMII | CTCAG | 4 cut(s) | 165, 1233, 1952, 2963 |
| BseNI | ACTGG | 2 cut(s) | 481, 3137 |
| BseRI | GAGGAG | 4 cut(s) | 773, 884, 3251, 3551 |
| BseSI | GKGCMC | 3 cut(s) | 1731, 2621, 3546 |
| BseXI | GCAGC | 4 cut(s) | 544, 1744, 2060, 3204 |
| BsgI | GTGCAG | 4 cut(s) | 213, 392, 543, 3459 |
| Bsh1236I | CGCG | 1 cut(s) | 1916 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2888 |
| BshNI | GGYRCC | 4 cut(s) | 652, 1015, 1066, 3541 |
| BshVI | ATCGAT | 2 cut(s) | 1242, 2884 |
| BsiEI | CGRYCG | 1 cut(s) | 2888 |
| BsiHKAI | GWGCWC | 6 cut(s) | 42, 419, 543, 792, 2341, 3038 |
| BsiSI | CCGG | 8 cut(s) | 680, 725, 1029, 1086, 1331, 1811, 2321, 2776 |
| BslFI | GGGAC | 4 cut(s) | 271, 1263, 2706, 2881 |
| BsmAI | GTCTC | 6 cut(s) | 517, 710, 1923, 2752, 2935, 3102 |
| BsmBI | CGTCTC | 1 cut(s) | 1923 |
| BsmFI | GGGAC | 4 cut(s) | 271, 1263, 2706, 2881 |
| BsmI | GAATGC | 3 cut(s) | 858, 1054, 1760 |
| Bso31I | GGTCTC | 2 cut(s) | 517, 2935 |
| Bsp120I | GGGCCC | 1 cut(s) | 2617 |
| Bsp13I | TCCGGA | 1 cut(s) | 2320 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1938 |
| BspACI | CCGC | 8 cut(s) | 71, 146, 1052, 1125, 2285, 2966, 3197, 3566 |
| BspCNI | CTCAG | 4 cut(s) | 166, 1232, 1951, 2962 |
| BspDI | ATCGAT | 2 cut(s) | 1242, 2884 |
| BspEI | TCCGGA | 1 cut(s) | 2320 |
| BspFNI | CGCG | 1 cut(s) | 1916 |
| BspPI | GGATC | 6 cut(s) | 81, 690, 1020, 1146, 1238, 2267 |
| BspT107I | GGYRCC | 4 cut(s) | 652, 1015, 1066, 3541 |
| BspTI | CTTAAG | 2 cut(s) | 26, 947 |
| BspTNI | GGTCTC | 2 cut(s) | 517, 2935 |
| BsrDI | GCAATG | 5 cut(s) | 674, 719, 813, 2404, 3253 |
| BsrFI | RCCGGY | 2 cut(s) | 724, 1330 |
| BsrI | ACTGG | 2 cut(s) | 481, 3137 |
| BssAI | RCCGGY | 2 cut(s) | 724, 1330 |
| BssECI | CCNNGG | 5 cut(s) | 506, 1248, 2087, 2276, 3376 |
| BssT1I | CCWWGG | 3 cut(s) | 506, 2087, 2276 |
| Bst2UI | CCWGG | 1 cut(s) | 3378 |
| Bst4CI | ACNGT | 8 cut(s) | 13, 553, 1039, 1112, 1301, 1421, 2250, 3010 |
| Bst6I | CTCTTC | 4 cut(s) | 1740, 2202, 2223, 2229 |
| BstAFI | CTTAAG | 2 cut(s) | 26, 947 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1190 |
| BstBAI | YACGTR | 3 cut(s) | 1133, 1275, 2336 |
| BstC8I | GCNNGC | 3 cut(s) | 571, 851, 2265 |
| BstDSI | CCRYGG | 1 cut(s) | 1248 |
| BstEII | GGTNACC | 1 cut(s) | 2305 |
| BstF5I | GGATG | 7 cut(s) | 839, 1311, 2109, 2389, 2569, 2944, 3099 |
| BstFNI | CGCG | 1 cut(s) | 1916 |
| BstH2I | RGCGCY | 1 cut(s) | 1669 |
| BstHHI | GCGC | 2 cut(s) | 1668, 3369 |
| BstMAI | GTCTC | 6 cut(s) | 517, 710, 1923, 2752, 2935, 3102 |
| BstMCI | CGRYCG | 1 cut(s) | 2888 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 566, 855, 1190, 1865, 2264, 3059, 3164 |
| BstNI | CCWGG | 1 cut(s) | 3378 |
| BstNSI | RCATGY | 3 cut(s) | 853, 1193, 2822 |
| BstPI | GGTNACC | 1 cut(s) | 2305 |
| BstSCI | CCNGG | 3 cut(s) | 1085, 2774, 3376 |
| BstSFI | CTRYAG | 3 cut(s) | 81, 1660, 1977 |
| BstSLI | GKGCMC | 3 cut(s) | 1731, 2621, 3546 |
| BstUI | CGCG | 1 cut(s) | 1916 |
| BstV1I | GCAGC | 4 cut(s) | 544, 1744, 2060, 3204 |
| BstV2I | GAAGAC | 4 cut(s) | 1268, 1387, 2516, 3011 |
| BstX2I | RGATCY | 2 cut(s) | 1025, 1588 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1815 |
| BstYI | RGATCY | 2 cut(s) | 1025, 1588 |
| Bsu15I | ATCGAT | 2 cut(s) | 1242, 2884 |
| Bsu36I | CCTNAGG | 1 cut(s) | 93 |
| BsuI | GTATCC | 6 cut(s) | 40, 330, 370, 1208, 1217, 1471 |
| BsuTUI | ATCGAT | 2 cut(s) | 1242, 2884 |
| BtgI | CCRYGG | 1 cut(s) | 1248 |
| BtgZI | GCGATG | 2 cut(s) | 839, 2874 |
| BtsCI | GGATG | 7 cut(s) | 839, 1311, 2109, 2389, 2569, 2944, 3099 |
| BtsIMutI | CAGTG | 4 cut(s) | 1785, 1956, 2037, 3144 |
| Cac8I | GCNNGC | 3 cut(s) | 571, 851, 2265 |
| CaiI | CAGNNNCTG | 1 cut(s) | 557 |
| CfoI | GCGC | 2 cut(s) | 1668, 3369 |
| Cfr10I | RCCGGY | 2 cut(s) | 724, 1330 |
| Cfr13I | GGNCC | 9 cut(s) | 258, 1252, 1876, 2547, 2617, 2618, 2693, 3014, 3404 |
| ClaI | ATCGAT | 2 cut(s) | 1242, 2884 |
| CseI | GACGC | 2 cut(s) | 1905, 1943 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1070, 1105 |
| DraI | TTTAAA | 1 cut(s) | 1494 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3341 |
| EaeI | YGGCCR | 2 cut(s) | 2364, 2959 |
| Eam1104I | CTCTTC | 4 cut(s) | 1740, 2202, 2223, 2229 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3341 |
| EarI | CTCTTC | 4 cut(s) | 1740, 2202, 2223, 2229 |
| Ecl136II | GAGCTC | 3 cut(s) | 40, 541, 3036 |
| Eco130I | CCWWGG | 3 cut(s) | 506, 2087, 2276 |
| Eco147I | AGGCCT | 1 cut(s) | 3293 |
| Eco24I | GRGCYC | 5 cut(s) | 42, 543, 1004, 2621, 3038 |
| Eco31I | GGTCTC | 2 cut(s) | 517, 2935 |
| Eco47I | GGWCC | 4 cut(s) | 258, 1252, 2693, 3014 |
| Eco53kI | GAGCTC | 3 cut(s) | 40, 541, 3036 |
| Eco57I | CTGAAG | 2 cut(s) | 1700, 1809 |
| Eco72I | CACGTG | 1 cut(s) | 2336 |
| Eco81I | CCTNAGG | 1 cut(s) | 93 |
| Eco91I | GGTNACC | 1 cut(s) | 2305 |
| EcoICRI | GAGCTC | 3 cut(s) | 40, 541, 3036 |
| EcoO109I | RGGNCCY | 2 cut(s) | 258, 2693 |
| EcoO65I | GGTNACC | 1 cut(s) | 2305 |
| EcoRI | GAATTC | 1 cut(s) | 2212 |
| EcoRII | CCWGG | 1 cut(s) | 3376 |
| EcoT14I | CCWWGG | 3 cut(s) | 506, 2087, 2276 |
| EcoT22I | ATGCAT | 3 cut(s) | 855, 2569, 2575 |
| EcoT38I | GRGCYC | 5 cut(s) | 42, 543, 1004, 2621, 3038 |
| ErhI | CCWWGG | 3 cut(s) | 506, 2087, 2276 |
| Esp3I | CGTCTC | 1 cut(s) | 1923 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1127, 1159, 1496, 1528, 1956, 1988, 3333, 3365 |
| FaqI | GGGAC | 4 cut(s) | 271, 1263, 2706, 2881 |
| FauNDI | CATATG | 1 cut(s) | 2569 |
| FbaI | TGATCA | 1 cut(s) | 3309 |
| Fnu4HI | GCNGC | 5 cut(s) | 558, 1758, 2049, 3198, 3218 |
| FokI | GGATG | 7 cut(s) | 826, 1318, 2116, 2396, 2576, 2931, 3106 |
| FriOI | GRGCYC | 5 cut(s) | 42, 543, 1004, 2621, 3038 |
| Fsp4HI | GCNGC | 5 cut(s) | 558, 1758, 2049, 3198, 3218 |
| FspBI | CTAG | 5 cut(s) | 455, 956, 2844, 3264, 3393 |
| GlaI | GCGC | 2 cut(s) | 1667, 3368 |
| GluI | GCNGC | 5 cut(s) | 558, 1758, 2049, 3198, 3218 |
| HaeII | RGCGCY | 1 cut(s) | 1669 |
| HapII | CCGG | 8 cut(s) | 680, 725, 1029, 1086, 1331, 1811, 2321, 2776 |
| HgaI | GACGC | 2 cut(s) | 1905, 1943 |
| HhaI | GCGC | 2 cut(s) | 1668, 3369 |
| Hin6I | GCGC | 2 cut(s) | 1666, 3367 |
| HinP1I | GCGC | 2 cut(s) | 1666, 3367 |
| HincII | GTYRAC | 1 cut(s) | 2600 |
| HindII | GTYRAC | 1 cut(s) | 2600 |
| HindIII | AAGCTT | 3 cut(s) | 1892, 2265, 2895 |
| HpaII | CCGG | 8 cut(s) | 680, 725, 1029, 1086, 1331, 1811, 2321, 2776 |
| HphI | GGTGA | 9 cut(s) | 47, 49, 1009, 1027, 2299, 2368, 3122, 3215, 3493 |
| Hpy166II | GTNNAC | 4 cut(s) | 1252, 2435, 2600, 3383 |
| Hpy8I | GTNNAC | 4 cut(s) | 1252, 2435, 2600, 3383 |
| HpyCH4III | ACNGT | 8 cut(s) | 13, 553, 1039, 1112, 1301, 1421, 2250, 3010 |
| HpyCH4IV | ACGT | 7 cut(s) | 1132, 1274, 1289, 1345, 1633, 2335, 2602 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 566, 855, 1190, 1865, 2264, 3059, 3164 |
| HpySE526I | ACGT | 7 cut(s) | 1132, 1274, 1289, 1345, 1633, 2335, 2602 |
| HspAI | GCGC | 2 cut(s) | 1666, 3367 |
| Kpn2I | TCCGGA | 1 cut(s) | 2320 |
| KpnI | GGTACC | 2 cut(s) | 1019, 1070 |
| Ksp22I | TGATCA | 1 cut(s) | 3309 |
| Lsp1109I | GCAGC | 4 cut(s) | 544, 1744, 2060, 3204 |
| MaeI | CTAG | 5 cut(s) | 455, 956, 2844, 3264, 3393 |
| MaeII | ACGT | 7 cut(s) | 1132, 1274, 1289, 1345, 1633, 2335, 2602 |
| MaeIII | GTNAC | 9 cut(s) | 55, 1690, 2305, 2471, 2492, 2609, 2917, 3128, 3203 |
| MfeI | CAATTG | 1 cut(s) | 1860 |
| MflI | RGATCY | 2 cut(s) | 1025, 1588 |
| MlsI | TGGCCA | 2 cut(s) | 2366, 2961 |
| MluI | ACGCGT | 1 cut(s) | 1914 |
| MluNI | TGGCCA | 2 cut(s) | 2366, 2961 |
| MlyI | GAGTC | 5 cut(s) | 1173, 2863, 3269, 3489, 3521 |
| MmeI | TCCRAC | 7 cut(s) | 540, 1152, 1996, 2223, 2992, 3213, 3313 |
| Mox20I | TGGCCA | 2 cut(s) | 2366, 2961 |
| Mph1103I | ATGCAT | 3 cut(s) | 855, 2569, 2575 |
| MroI | TCCGGA | 1 cut(s) | 2320 |
| MscI | TGGCCA | 2 cut(s) | 2366, 2961 |
| MslI | CAYNNNNRTG | 6 cut(s) | 844, 848, 1273, 1619, 2478, 3092 |
| Msp20I | TGGCCA | 2 cut(s) | 2366, 2961 |
| MspA1I | CMGCKG | 1 cut(s) | 146 |
| MspCI | CTTAAG | 2 cut(s) | 26, 947 |
| MspI | CCGG | 8 cut(s) | 680, 725, 1029, 1086, 1331, 1811, 2321, 2776 |
| MspR9I | CCNGG | 3 cut(s) | 1087, 2776, 3378 |
| MunI | CAATTG | 1 cut(s) | 1860 |
| Mva1269I | GAATGC | 3 cut(s) | 858, 1054, 1760 |
| MvaI | CCWGG | 1 cut(s) | 3378 |
| MvnI | CGCG | 1 cut(s) | 1916 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 566, 855, 1190, 1865, 2264, 3059, 3164 |
| NciI | CCSGG | 2 cut(s) | 1087, 2776 |
| NdeI | CATATG | 1 cut(s) | 2569 |
| NmuCI | GTSAC | 8 cut(s) | 55, 1690, 2305, 2471, 2492, 2917, 3128, 3203 |
| NsiI | ATGCAT | 3 cut(s) | 855, 2569, 2575 |
| NspI | RCATGY | 3 cut(s) | 853, 1193, 2822 |
| OliI | CACNNNNGTG | 1 cut(s) | 1619 |
| PaeI | GCATGC | 1 cut(s) | 853 |
| PceI | AGGCCT | 1 cut(s) | 3293 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2599 |
| PctI | GAATGC | 3 cut(s) | 858, 1054, 1760 |
| PfeI | GAWTC | 8 cut(s) | 646, 875, 910, 1433, 1483, 1819, 2786, 3356 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 807, 1171, 1516, 1885 |
| PkrI | GCNGC | 5 cut(s) | 559, 1759, 2050, 3199, 3219 |
| Ple19I | CGATCG | 1 cut(s) | 2888 |
| PleI | GAGTC | 5 cut(s) | 1173, 2863, 3268, 3489, 3520 |
| PmaCI | CACGTG | 1 cut(s) | 2336 |
| PmlI | CACGTG | 1 cut(s) | 2336 |
| PpsI | GAGTC | 5 cut(s) | 1173, 2863, 3268, 3489, 3520 |
| Ppu21I | YACGTR | 3 cut(s) | 1133, 1275, 2336 |
| PpuMI | RGGWCCY | 2 cut(s) | 258, 2693 |
| PsiI | TTATAA | 1 cut(s) | 3416 |
| Psp124BI | GAGCTC | 3 cut(s) | 42, 543, 3038 |
| Psp1406I | AACGTT | 1 cut(s) | 1345 |
| Psp5II | RGGWCCY | 2 cut(s) | 258, 2693 |
| Psp6I | CCWGG | 1 cut(s) | 3376 |
| PspCI | CACGTG | 1 cut(s) | 2336 |
| PspEI | GGTNACC | 1 cut(s) | 2305 |
| PspGI | CCWGG | 1 cut(s) | 3376 |
| PspOMI | GGGCCC | 1 cut(s) | 2617 |
| PspPI | GGNCC | 9 cut(s) | 258, 1252, 1876, 2547, 2617, 2618, 2693, 3014, 3404 |
| PspPPI | RGGWCCY | 2 cut(s) | 258, 2693 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2011, 2043, 3373, 3405 |
| PstNI | CAGNNNCTG | 1 cut(s) | 557 |
| PsuI | RGATCY | 2 cut(s) | 1025, 1588 |
| PvuI | CGATCG | 1 cut(s) | 2888 |
| RseI | CAYNNNNRTG | 6 cut(s) | 844, 848, 1273, 1619, 2478, 3092 |
| SacI | GAGCTC | 3 cut(s) | 42, 543, 3038 |
| SatI | GCNGC | 5 cut(s) | 558, 1758, 2049, 3198, 3218 |
| Sau96I | GGNCC | 9 cut(s) | 258, 1252, 1876, 2547, 2617, 2618, 2693, 3014, 3404 |
| SchI | GAGTC | 5 cut(s) | 1173, 2863, 3269, 3489, 3521 |
| ScrFI | CCNGG | 3 cut(s) | 1087, 2776, 3378 |
| SfcI | CTRYAG | 3 cut(s) | 81, 1660, 1977 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1330 |
| SinI | GGWCC | 4 cut(s) | 258, 1252, 2693, 3014 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 844, 848, 1273, 1619, 2478, 3092 |
| SpeI | ACTAGT | 1 cut(s) | 454 |
| SphI | GCATGC | 1 cut(s) | 853 |
| SseBI | AGGCCT | 1 cut(s) | 3293 |
| SsiI | CCGC | 8 cut(s) | 71, 146, 1052, 1125, 2285, 2966, 3197, 3566 |
| SspI | AATATT | 1 cut(s) | 1362 |
| SspMI | CTAG | 5 cut(s) | 455, 956, 2844, 3264, 3393 |
| SstI | GAGCTC | 3 cut(s) | 42, 543, 3038 |
| StuI | AGGCCT | 1 cut(s) | 3293 |
| StyD4I | CCNGG | 3 cut(s) | 1085, 2774, 3376 |
| StyI | CCWWGG | 3 cut(s) | 506, 2087, 2276 |
| TaaI | ACNGT | 8 cut(s) | 13, 553, 1039, 1112, 1301, 1421, 2250, 3010 |
| TaiI | ACGT | 7 cut(s) | 1135, 1277, 1292, 1348, 1636, 2338, 2605 |
| TaqI | TCGA | 6 cut(s) | 1242, 1764, 2658, 2828, 2884, 2980 |
| TatI | WGTACW | 2 cut(s) | 580, 2910 |
| TauI | GCSGC | 1 cut(s) | 3200 |
| TfiI | GAWTC | 8 cut(s) | 646, 875, 910, 1433, 1483, 1819, 2786, 3356 |
| TscAI | CASTG | 4 cut(s) | 1792, 1963, 2044, 3144 |
| TseFI | GTSAC | 8 cut(s) | 55, 1690, 2305, 2471, 2492, 2917, 3128, 3203 |
| TseI | GCWGC | 4 cut(s) | 557, 1757, 2048, 3217 |
| Tsp45I | GTSAC | 8 cut(s) | 55, 1690, 2305, 2471, 2492, 2917, 3128, 3203 |
| TspGWI | ACGGA | 1 cut(s) | 1227 |
| TspRI | CASTG | 4 cut(s) | 1792, 1963, 2044, 3144 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 807, 1171, 1516, 1885 |
| Vha464I | CTTAAG | 2 cut(s) | 26, 947 |
| VpaK11BI | GGWCC | 4 cut(s) | 258, 1252, 2693, 3014 |
| XapI | RAATTY | 5 cut(s) | 272, 2212, 2316, 2447, 3270 |
| XceI | RCATGY | 3 cut(s) | 853, 1193, 2822 |
| XspI | CTAG | 5 cut(s) | 455, 956, 2844, 3264, 3393 |
| Zsp2I | ATGCAT | 3 cut(s) | 855, 2569, 2575 |