transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RT_RNaseH | PF17917 | 2 - 55 | 9.9e-17 | RNase H-like domain found in reverse transcriptase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 244 |
| AciI | CCGC | 1 cut(s) | 323 |
| AclWI | GGATC | 1 cut(s) | 67 |
| AcsI | RAATTY | 2 cut(s) | 174, 389 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 244 |
| AgsI | TTSAA | 1 cut(s) | 302 |
| AjnI | CCWGG | 1 cut(s) | 221 |
| AlwI | GGATC | 1 cut(s) | 67 |
| ApeKI | GCWGC | 1 cut(s) | 89 |
| ApoI | RAATTY | 2 cut(s) | 174, 389 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 273 |
| BbvI | GCAGC | 1 cut(s) | 101 |
| BccI | CCATC | 1 cut(s) | 135 |
| BciT130I | CCWGG | 1 cut(s) | 223 |
| BciVI | GTATCC | 1 cut(s) | 138 |
| BclI | TGATCA | 1 cut(s) | 82 |
| BfuI | GTATCC | 1 cut(s) | 138 |
| BisI | GCNGC | 1 cut(s) | 90 |
| BlpI | GCTNAGC | 1 cut(s) | 210 |
| BlsI | GCNGC | 1 cut(s) | 91 |
| Bme1390I | CCNGG | 1 cut(s) | 223 |
| BmrFI | CCNGG | 1 cut(s) | 223 |
| BmsI | GCATC | 1 cut(s) | 109 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 210 |
| BsaJI | CCNNGG | 2 cut(s) | 238, 314 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 244 |
| BseBI | CCWGG | 1 cut(s) | 223 |
| BseDI | CCNNGG | 2 cut(s) | 238, 314 |
| BseGI | GGATG | 1 cut(s) | 124 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 244 |
| BseMII | CTCAG | 1 cut(s) | 201 |
| BseXI | GCAGC | 1 cut(s) | 101 |
| BslFI | GGGAC | 1 cut(s) | 261 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 244 |
| BsmFI | GGGAC | 1 cut(s) | 261 |
| Bsp143I | GATC | 2 cut(s) | 59, 82 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 210 |
| Bsp19I | CCATGG | 2 cut(s) | 238, 314 |
| BspACI | CCGC | 1 cut(s) | 323 |
| BspCNI | CTCAG | 1 cut(s) | 202 |
| BspPI | GGATC | 1 cut(s) | 67 |
| BssECI | CCNNGG | 2 cut(s) | 238, 314 |
| BssMI | GATC | 2 cut(s) | 59, 82 |
| BssT1I | CCWWGG | 2 cut(s) | 238, 314 |
| Bst2UI | CCWGG | 1 cut(s) | 223 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 10 |
| BstC8I | GCNNGC | 1 cut(s) | 15 |
| BstDEI | CTNAG | 2 cut(s) | 31, 210 |
| BstDSI | CCRYGG | 2 cut(s) | 238, 314 |
| BstF5I | GGATG | 1 cut(s) | 124 |
| BstKTI | GATC | 2 cut(s) | 62, 85 |
| BstMBI | GATC | 2 cut(s) | 59, 82 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 10 |
| BstNI | CCWGG | 1 cut(s) | 223 |
| BstSCI | CCNGG | 1 cut(s) | 221 |
| BstV1I | GCAGC | 1 cut(s) | 101 |
| BstX2I | RGATCY | 1 cut(s) | 59 |
| BstYI | RGATCY | 1 cut(s) | 59 |
| BsuI | GTATCC | 1 cut(s) | 138 |
| BtgI | CCRYGG | 2 cut(s) | 238, 314 |
| BtsCI | GGATG | 1 cut(s) | 124 |
| BtsI | GCAGTG | 1 cut(s) | 199 |
| BtsIMutI | CAGTG | 1 cut(s) | 199 |
| Cac8I | GCNNGC | 1 cut(s) | 15 |
| CviAII | CATG | 3 cut(s) | 86, 239, 315 |
| CviJI | RGCY | 3 cut(s) | 92, 209, 226 |
| CviKI_1 | RGCY | 3 cut(s) | 92, 209, 226 |
| DdeI | CTNAG | 2 cut(s) | 31, 210 |
| DpnI | GATC | 2 cut(s) | 61, 84 |
| DpnII | GATC | 2 cut(s) | 59, 82 |
| Eco130I | CCWWGG | 2 cut(s) | 238, 314 |
| EcoRII | CCWGG | 1 cut(s) | 221 |
| EcoT14I | CCWWGG | 2 cut(s) | 238, 314 |
| ErhI | CCWWGG | 2 cut(s) | 238, 314 |
| FaeI | CATG | 3 cut(s) | 89, 242, 318 |
| FaiI | YATR | 6 cut(s) | 49, 87, 240, 316, 321, 353 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 29 |
| FaqI | GGGAC | 1 cut(s) | 261 |
| FatI | CATG | 3 cut(s) | 85, 238, 314 |
| FbaI | TGATCA | 1 cut(s) | 82 |
| Fnu4HI | GCNGC | 1 cut(s) | 90 |
| FokI | GGATG | 1 cut(s) | 131 |
| Fsp4HI | GCNGC | 1 cut(s) | 90 |
| GluI | GCNGC | 1 cut(s) | 90 |
| Hin1II | CATG | 3 cut(s) | 89, 242, 318 |
| HinfI | GANTC | 1 cut(s) | 269 |
| Hpy188I | TCNGA | 1 cut(s) | 82 |
| Hpy188III | TCNNGA | 4 cut(s) | 179, 278, 302, 377 |
| HpyAV | CCTTC | 2 cut(s) | 109, 181 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 89 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 10 |
| HpyF3I | CTNAG | 2 cut(s) | 31, 210 |
| Hsp92II | CATG | 3 cut(s) | 89, 242, 318 |
| Ksp22I | TGATCA | 1 cut(s) | 82 |
| Kzo9I | GATC | 2 cut(s) | 59, 82 |
| LpnPI | CCDG | 5 cut(s) | 208, 235, 291, 358, 362 |
| Lsp1109I | GCAGC | 1 cut(s) | 101 |
| LweI | GCATC | 1 cut(s) | 109 |
| MalI | GATC | 2 cut(s) | 61, 84 |
| MboI | GATC | 2 cut(s) | 59, 82 |
| MflI | RGATCY | 1 cut(s) | 59 |
| MluCI | AATT | 3 cut(s) | 174, 334, 389 |
| MroXI | GAANNNNTTC | 1 cut(s) | 273 |
| MseI | TTAA | 3 cut(s) | 228, 263, 397 |
| MspR9I | CCNGG | 1 cut(s) | 223 |
| MvaI | CCWGG | 1 cut(s) | 223 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 10 |
| NcoI | CCATGG | 2 cut(s) | 238, 314 |
| NdeII | GATC | 2 cut(s) | 59, 82 |
| NlaIII | CATG | 3 cut(s) | 89, 242, 318 |
| PdmI | GAANNNNTTC | 1 cut(s) | 273 |
| PfeI | GAWTC | 1 cut(s) | 269 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 244 |
| PkrI | GCNGC | 1 cut(s) | 91 |
| Psp6I | CCWGG | 1 cut(s) | 221 |
| PspGI | CCWGG | 1 cut(s) | 221 |
| PsuI | RGATCY | 1 cut(s) | 59 |
| SaqAI | TTAA | 3 cut(s) | 228, 263, 397 |
| SatI | GCNGC | 1 cut(s) | 90 |
| Sau3AI | GATC | 2 cut(s) | 59, 82 |
| ScrFI | CCNGG | 1 cut(s) | 223 |
| SetI | ASST | 4 cut(s) | 47, 101, 256, 369 |
| SfaNI | GCATC | 1 cut(s) | 109 |
| Sse9I | AATT | 3 cut(s) | 174, 334, 389 |
| SsiI | CCGC | 1 cut(s) | 323 |
| StyD4I | CCNGG | 1 cut(s) | 221 |
| StyI | CCWWGG | 2 cut(s) | 238, 314 |
| TaqI | TCGA | 1 cut(s) | 178 |
| TasI | AATT | 3 cut(s) | 174, 334, 389 |
| TfiI | GAWTC | 1 cut(s) | 269 |
| Tru1I | TTAA | 3 cut(s) | 228, 263, 397 |
| Tru9I | TTAA | 3 cut(s) | 228, 263, 397 |
| TscAI | CASTG | 1 cut(s) | 199 |
| TseI | GCWGC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 3 cut(s) | 246, 282, 297 |
| TspRI | CASTG | 1 cut(s) | 199 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 244 |
| XapI | RAATTY | 2 cut(s) | 174, 389 |
| XmnI | GAANNNNTTC | 1 cut(s) | 273 |