protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 504 - 658 | 3.8e-28 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 722 - 820 | 9.6e-35 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 747 - 850 | 1.7e-38 | RNase H-like domain found in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1838 |
| AatII | GACGTC | 2 cut(s) | 416, 1271 |
| Acc16I | TGCGCA | 1 cut(s) | 939 |
| Acc36I | ACCTGC | 1 cut(s) | 2069 |
| Acc65I | GGTACC | 2 cut(s) | 80, 2484 |
| AccB1I | GGYRCC | 6 cut(s) | 80, 263, 821, 1016, 1171, 2484 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 47 |
| AccI | GTMKAC | 3 cut(s) | 330, 2595, 2608 |
| AciI | CCGC | 1 cut(s) | 775 |
| AclI | AACGTT | 4 cut(s) | 1074, 1715, 1894, 2729 |
| AclWI | GGATC | 4 cut(s) | 997, 1010, 1686, 2795 |
| AcoI | YGGCCR | 1 cut(s) | 1612 |
| AcsI | RAATTY | 5 cut(s) | 615, 632, 836, 944, 2423 |
| AcuI | CTGAAG | 1 cut(s) | 1143 |
| AcyI | GRCGYC | 5 cut(s) | 413, 1017, 1268, 2271, 2628 |
| AdeI | CACNNNGTG | 1 cut(s) | 47 |
| AfaI | GTAC | 5 cut(s) | 82, 1494, 1762, 2446, 2486 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 47, 676, 786, 1224, 1557 |
| AflII | CTTAAG | 6 cut(s) | 889, 1187, 1301, 1867, 2602, 2768 |
| AflIII | ACRYGT | 1 cut(s) | 2896 |
| AhlI | ACTAGT | 1 cut(s) | 2611 |
| AjiI | CACGTC | 1 cut(s) | 2214 |
| AjnI | CCWGG | 3 cut(s) | 43, 1756, 2676 |
| AleI | CACNNNNGTG | 1 cut(s) | 2045 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2806, 2838 |
| Alw21I | GWGCWC | 1 cut(s) | 702 |
| Alw26I | GTCTC | 5 cut(s) | 420, 655, 1229, 1300, 2250 |
| AlwI | GGATC | 4 cut(s) | 997, 1010, 1686, 2795 |
| AoxI | GGCC | 9 cut(s) | 90, 543, 552, 603, 772, 1612, 2123, 2292, 2959 |
| ApeKI | GCWGC | 2 cut(s) | 19, 2474 |
| ApoI | RAATTY | 5 cut(s) | 615, 632, 836, 944, 2423 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1506, 1538, 2775, 2807 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2186, 2424 |
| Asp718I | GGTACC | 2 cut(s) | 80, 2484 |
| AspA2I | CCTAGG | 1 cut(s) | 2513 |
| AspLEI | GCGC | 3 cut(s) | 940, 1019, 2094 |
| AspS9I | GGNCC | 6 cut(s) | 385, 1564, 2056, 2124, 2292, 2349 |
| AsuHPI | GGTGA | 1 cut(s) | 697 |
| AsuII | TTCGAA | 1 cut(s) | 1857 |
| AvaII | GGWCC | 4 cut(s) | 385, 1564, 2056, 2349 |
| AvrII | CCTAGG | 1 cut(s) | 2513 |
| AxyI | CCTNAGG | 1 cut(s) | 1029 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 64, 97, 2436, 2469 |
| BalI | TGGCCA | 1 cut(s) | 1614 |
| BamHI | GGATCC | 1 cut(s) | 1002 |
| BanI | GGYRCC | 6 cut(s) | 80, 263, 821, 1016, 1171, 2484 |
| BanII | GRGCYC | 2 cut(s) | 702, 2579 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1202, 1234, 2616, 2648 |
| BbsI | GAAGAC | 1 cut(s) | 2631 |
| Bbv12I | GWGCWC | 1 cut(s) | 702 |
| BbvI | GCAGC | 2 cut(s) | 31, 2486 |
| BceAI | ACGGC | 3 cut(s) | 284, 807, 2279 |
| BciT130I | CCWGG | 3 cut(s) | 45, 1758, 2678 |
| BciVI | GTATCC | 2 cut(s) | 894, 2523 |
| BclI | TGATCA | 3 cut(s) | 1588, 2467, 2752 |
| BcoDI | GTCTC | 5 cut(s) | 420, 655, 1229, 1300, 2250 |
| BcuI | ACTAGT | 1 cut(s) | 2611 |
| BfmI | CTRYAG | 3 cut(s) | 1534, 1723, 2086 |
| BfoI | RGCGCY | 2 cut(s) | 1020, 2095 |
| BfrI | CTTAAG | 6 cut(s) | 889, 1187, 1301, 1867, 2602, 2768 |
| BfuAI | ACCTGC | 1 cut(s) | 2069 |
| BfuI | GTATCC | 2 cut(s) | 894, 2523 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 551 |
| BglII | AGATCT | 1 cut(s) | 2014 |
| BisI | GCNGC | 3 cut(s) | 20, 775, 2475 |
| BlnI | CCTAGG | 1 cut(s) | 2513 |
| BlsI | GCNGC | 3 cut(s) | 21, 776, 2476 |
| Bme1390I | CCNGG | 3 cut(s) | 45, 1758, 2678 |
| Bme18I | GGWCC | 4 cut(s) | 385, 1564, 2056, 2349 |
| BmgBI | CACGTC | 1 cut(s) | 2214 |
| BmgT120I | GGNCC | 6 cut(s) | 385, 1564, 2056, 2124, 2292, 2349 |
| BmrFI | CCNGG | 3 cut(s) | 45, 1758, 2678 |
| BmsI | GCATC | 5 cut(s) | 958, 1287, 1584, 2350, 2967 |
| BpiI | GAAGAC | 1 cut(s) | 2631 |
| Bpu10I | CCTNAGC | 1 cut(s) | 339 |
| Bpu14I | TTCGAA | 1 cut(s) | 1857 |
| BpuEI | CTTGAG | 9 cut(s) | 100, 121, 620, 1028, 1106, 1260, 1406, 1619, 2897 |
| BsaHI | GRCGYC | 5 cut(s) | 413, 1017, 1268, 2271, 2628 |
| BsaI | GGTCTC | 1 cut(s) | 2250 |
| BsaJI | CCNNGG | 5 cut(s) | 399, 972, 1756, 2513, 2690 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 837, 867 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 47, 676, 786, 1224, 1557 |
| Bse1I | ACTGG | 1 cut(s) | 1516 |
| Bse21I | CCTNAGG | 1 cut(s) | 1029 |
| Bse3DI | GCAATG | 4 cut(s) | 984, 1193, 1665, 1756 |
| BseBI | CCWGG | 3 cut(s) | 45, 1758, 2678 |
| BseDI | CCNNGG | 5 cut(s) | 399, 972, 1756, 2513, 2690 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 47, 676, 786, 1224, 1557 |
| BseMI | GCAATG | 4 cut(s) | 984, 1193, 1665, 1756 |
| BseMII | CTCAG | 3 cut(s) | 180, 1511, 2289 |
| BseNI | ACTGG | 1 cut(s) | 1516 |
| BseRI | GAGGAG | 2 cut(s) | 389, 977 |
| BseXI | GCAGC | 2 cut(s) | 31, 2486 |
| BseYI | CCCAGC | 1 cut(s) | 709 |
| BsgI | GTGCAG | 1 cut(s) | 2202 |
| BshFI | GGCC | 9 cut(s) | 92, 545, 554, 605, 774, 1614, 2125, 2294, 2961 |
| BshNI | GGYRCC | 6 cut(s) | 80, 263, 821, 1016, 1171, 2484 |
| BsiHKAI | GWGCWC | 1 cut(s) | 702 |
| BslFI | GGGAC | 3 cut(s) | 1241, 2327, 2335 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 47, 676, 786, 1224, 1557 |
| BsmAI | GTCTC | 5 cut(s) | 420, 655, 1229, 1300, 2250 |
| BsmBI | CGTCTC | 1 cut(s) | 420 |
| BsmFI | GGGAC | 3 cut(s) | 1241, 2327, 2335 |
| BsmI | GAATGC | 3 cut(s) | 1480, 1737, 2186 |
| BsnI | GGCC | 9 cut(s) | 92, 545, 554, 605, 774, 1614, 2125, 2294, 2961 |
| Bso31I | GGTCTC | 1 cut(s) | 2250 |
| Bsp119I | TTCGAA | 1 cut(s) | 1857 |
| Bsp1286I | GDGCHC | 2 cut(s) | 702, 2579 |
| Bsp19I | CCATGG | 1 cut(s) | 972 |
| BspACI | CCGC | 1 cut(s) | 775 |
| BspANI | GGCC | 9 cut(s) | 92, 545, 554, 605, 774, 1614, 2125, 2294, 2961 |
| BspCNI | CTCAG | 3 cut(s) | 181, 1510, 2288 |
| BspHI | TCATGA | 3 cut(s) | 238, 783, 1672 |
| BspMI | ACCTGC | 1 cut(s) | 2069 |
| BspPI | GGATC | 4 cut(s) | 997, 1010, 1686, 2795 |
| BspQI | GCTCTTC | 1 cut(s) | 732 |
| BspT104I | TTCGAA | 1 cut(s) | 1857 |
| BspT107I | GGYRCC | 6 cut(s) | 80, 263, 821, 1016, 1171, 2484 |
| BspTI | CTTAAG | 6 cut(s) | 889, 1187, 1301, 1867, 2602, 2768 |
| BspTNI | GGTCTC | 1 cut(s) | 2250 |
| BsrDI | GCAATG | 4 cut(s) | 984, 1193, 1665, 1756 |
| BsrI | ACTGG | 1 cut(s) | 1516 |
| BssECI | CCNNGG | 5 cut(s) | 399, 972, 1756, 2513, 2690 |
| BssNI | GRCGYC | 5 cut(s) | 413, 1017, 1268, 2271, 2628 |
| BssT1I | CCWWGG | 4 cut(s) | 399, 972, 2513, 2690 |
| Bst2UI | CCWGG | 3 cut(s) | 45, 1758, 2678 |
| Bst4CI | ACNGT | 3 cut(s) | 671, 1465, 1507 |
| Bst6I | CTCTTC | 3 cut(s) | 375, 732, 2672 |
| BstACI | GRCGYC | 5 cut(s) | 413, 1017, 1268, 2271, 2628 |
| BstAFI | CTTAAG | 6 cut(s) | 889, 1187, 1301, 1867, 2602, 2768 |
| BstBI | TTCGAA | 1 cut(s) | 1857 |
| BstC8I | GCNNGC | 3 cut(s) | 291, 698, 1612 |
| BstDSI | CCRYGG | 1 cut(s) | 972 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 784 |
| BstH2I | RGCGCY | 2 cut(s) | 1020, 2095 |
| BstHHI | GCGC | 3 cut(s) | 940, 1019, 2094 |
| BstMAI | GTCTC | 5 cut(s) | 420, 655, 1229, 1300, 2250 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 551, 766, 2291 |
| BstNI | CCWGG | 3 cut(s) | 45, 1758, 2678 |
| BstNSI | RCATGY | 2 cut(s) | 2078, 2900 |
| BstSCI | CCNGG | 3 cut(s) | 43, 1756, 2676 |
| BstSFI | CTRYAG | 3 cut(s) | 1534, 1723, 2086 |
| BstV1I | GCAGC | 2 cut(s) | 31, 2486 |
| BstV2I | GAAGAC | 1 cut(s) | 2631 |
| BstX2I | RGATCY | 2 cut(s) | 1002, 2014 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2241 |
| BstYI | RGATCY | 2 cut(s) | 1002, 2014 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1029 |
| BsuI | GTATCC | 2 cut(s) | 894, 2523 |
| BsuRI | GGCC | 9 cut(s) | 92, 545, 554, 605, 774, 1614, 2125, 2294, 2961 |
| BtgI | CCRYGG | 1 cut(s) | 972 |
| BtrI | CACGTC | 1 cut(s) | 2214 |
| BtsIMutI | CAGTG | 1 cut(s) | 1167 |
| BveI | ACCTGC | 1 cut(s) | 2069 |
| Cac8I | GCNNGC | 3 cut(s) | 291, 698, 1612 |
| CciI | TCATGA | 3 cut(s) | 238, 783, 1672 |
| CfoI | GCGC | 3 cut(s) | 940, 1019, 2094 |
| Cfr13I | GGNCC | 6 cut(s) | 385, 1564, 2056, 2124, 2292, 2349 |
| CseI | GACGC | 2 cut(s) | 2279, 2636 |
| CsiI | ACCWGGT | 1 cut(s) | 43 |
| Csp6I | GTAC | 5 cut(s) | 81, 1493, 1761, 2445, 2485 |
| CviQI | GTAC | 5 cut(s) | 81, 1493, 1761, 2445, 2485 |
| DinI | GGCGCC | 1 cut(s) | 1018 |
| DraI | TTTAAA | 2 cut(s) | 1920, 2973 |
| DraIII | CACNNNGTG | 1 cut(s) | 47 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1838 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1838 |
| EaeI | YGGCCR | 1 cut(s) | 1612 |
| Eam1104I | CTCTTC | 3 cut(s) | 375, 732, 2672 |
| EarI | CTCTTC | 3 cut(s) | 375, 732, 2672 |
| Ecl136II | GAGCTC | 1 cut(s) | 700 |
| Eco130I | CCWWGG | 4 cut(s) | 399, 972, 2513, 2690 |
| Eco24I | GRGCYC | 2 cut(s) | 702, 2579 |
| Eco31I | GGTCTC | 1 cut(s) | 2250 |
| Eco32I | GATATC | 1 cut(s) | 1342 |
| Eco47I | GGWCC | 4 cut(s) | 385, 1564, 2056, 2349 |
| Eco53kI | GAGCTC | 1 cut(s) | 700 |
| Eco57I | CTGAAG | 1 cut(s) | 1143 |
| Eco81I | CCTNAGG | 1 cut(s) | 1029 |
| EcoICRI | GAGCTC | 1 cut(s) | 700 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 784 |
| EcoO109I | RGGNCCY | 3 cut(s) | 385, 2124, 2349 |
| EcoRII | CCWGG | 3 cut(s) | 43, 1756, 2676 |
| EcoRV | GATATC | 1 cut(s) | 1342 |
| EcoT14I | CCWWGG | 4 cut(s) | 399, 972, 2513, 2690 |
| EcoT22I | ATGCAT | 1 cut(s) | 2982 |
| EcoT38I | GRGCYC | 2 cut(s) | 702, 2579 |
| EgeI | GGCGCC | 1 cut(s) | 1018 |
| EheI | GGCGCC | 1 cut(s) | 1018 |
| ErhI | CCWWGG | 4 cut(s) | 399, 972, 2513, 2690 |
| Esp3I | CGTCTC | 1 cut(s) | 420 |
| FaqI | GGGAC | 3 cut(s) | 1241, 2327, 2335 |
| FauNDI | CATATG | 2 cut(s) | 408, 1971 |
| FbaI | TGATCA | 3 cut(s) | 1588, 2467, 2752 |
| FblI | GTMKAC | 3 cut(s) | 330, 2595, 2608 |
| Fnu4HI | GCNGC | 3 cut(s) | 20, 775, 2475 |
| FriOI | GRGCYC | 2 cut(s) | 702, 2579 |
| Fsp4HI | GCNGC | 3 cut(s) | 20, 775, 2475 |
| FspI | TGCGCA | 1 cut(s) | 939 |
| GlaI | GCGC | 3 cut(s) | 939, 1018, 2093 |
| GluI | GCNGC | 3 cut(s) | 20, 775, 2475 |
| GsaI | CCCAGC | 1 cut(s) | 713 |
| HaeII | RGCGCY | 2 cut(s) | 1020, 2095 |
| HaeIII | GGCC | 9 cut(s) | 92, 545, 554, 605, 774, 1614, 2125, 2294, 2961 |
| HgaI | GACGC | 2 cut(s) | 2279, 2636 |
| HhaI | GCGC | 3 cut(s) | 940, 1019, 2094 |
| Hin1I | GRCGYC | 5 cut(s) | 413, 1017, 1268, 2271, 2628 |
| Hin6I | GCGC | 3 cut(s) | 938, 1017, 2092 |
| HinP1I | GCGC | 3 cut(s) | 938, 1017, 2092 |
| HincII | GTYRAC | 5 cut(s) | 57, 366, 756, 1272, 2596 |
| HindII | GTYRAC | 5 cut(s) | 57, 366, 756, 1272, 2596 |
| HinfI | GANTC | 6 cut(s) | 208, 322, 439, 1165, 1429, 2673 |
| HphI | GGTGA | 1 cut(s) | 697 |
| Hpy166II | GTNNAC | 9 cut(s) | 57, 331, 366, 586, 756, 1272, 2138, 2596, 2609 |
| Hpy8I | GTNNAC | 9 cut(s) | 57, 331, 366, 586, 756, 1272, 2138, 2596, 2609 |
| HpyCH4III | ACNGT | 3 cut(s) | 671, 1465, 1507 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 551, 766, 2291 |
| Hsp92I | GRCGYC | 5 cut(s) | 413, 1017, 1268, 2271, 2628 |
| HspAI | GCGC | 3 cut(s) | 938, 1017, 2092 |
| KasI | GGCGCC | 1 cut(s) | 1016 |
| KpnI | GGTACC | 2 cut(s) | 84, 2488 |
| Ksp22I | TGATCA | 3 cut(s) | 1588, 2467, 2752 |
| LguI | GCTCTTC | 1 cut(s) | 732 |
| LmnI | GCTCC | 2 cut(s) | 1394, 2203 |
| Lsp1109I | GCAGC | 2 cut(s) | 31, 2486 |
| LweI | GCATC | 5 cut(s) | 958, 1287, 1584, 2350, 2967 |
| MabI | ACCWGGT | 1 cut(s) | 43 |
| MaeIII | GTNAC | 8 cut(s) | 252, 301, 1507, 1649, 1871, 1934, 2267, 2905 |
| MfeI | CAATTG | 2 cut(s) | 62, 1320 |
| MflI | RGATCY | 2 cut(s) | 1002, 2014 |
| MhlI | GDGCHC | 2 cut(s) | 702, 2579 |
| MlsI | TGGCCA | 1 cut(s) | 1614 |
| MluNI | TGGCCA | 1 cut(s) | 1614 |
| Mly113I | GGCGCC | 1 cut(s) | 1017 |
| MlyI | GAGTC | 2 cut(s) | 217, 316 |
| MmeI | TCCRAC | 4 cut(s) | 96, 1307, 2507, 2921 |
| Mox20I | TGGCCA | 1 cut(s) | 1614 |
| Mph1103I | ATGCAT | 1 cut(s) | 2982 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2186, 2424 |
| MscI | TGGCCA | 1 cut(s) | 1614 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2045 |
| Msp20I | TGGCCA | 1 cut(s) | 1614 |
| MspCI | CTTAAG | 6 cut(s) | 889, 1187, 1301, 1867, 2602, 2768 |
| MspR9I | CCNGG | 3 cut(s) | 45, 1758, 2678 |
| MunI | CAATTG | 2 cut(s) | 62, 1320 |
| Mva1269I | GAATGC | 3 cut(s) | 1480, 1737, 2186 |
| MvaI | CCWGG | 3 cut(s) | 45, 1758, 2678 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 551, 766, 2291 |
| NarI | GGCGCC | 1 cut(s) | 1017 |
| NcoI | CCATGG | 1 cut(s) | 972 |
| NdeI | CATATG | 2 cut(s) | 408, 1971 |
| NmuCI | GTSAC | 5 cut(s) | 301, 1507, 1934, 2267, 2905 |
| NsbI | TGCGCA | 1 cut(s) | 939 |
| NsiI | ATGCAT | 1 cut(s) | 2982 |
| NspI | RCATGY | 2 cut(s) | 2078, 2900 |
| NspV | TTCGAA | 1 cut(s) | 1857 |
| OliI | CACNNNNGTG | 1 cut(s) | 2045 |
| PagI | TCATGA | 3 cut(s) | 238, 783, 1672 |
| PciI | ACATGT | 1 cut(s) | 2896 |
| PciSI | GCTCTTC | 1 cut(s) | 732 |
| PctI | GAATGC | 3 cut(s) | 1480, 1737, 2186 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2186, 2424 |
| PfeI | GAWTC | 4 cut(s) | 439, 1165, 1429, 2673 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 47 |
| PkrI | GCNGC | 3 cut(s) | 21, 776, 2476 |
| PleI | GAGTC | 2 cut(s) | 216, 316 |
| PluTI | GGCGCC | 1 cut(s) | 1020 |
| PpsI | GAGTC | 2 cut(s) | 216, 316 |
| PpuMI | RGGWCCY | 2 cut(s) | 385, 2349 |
| PscI | ACATGT | 1 cut(s) | 2896 |
| Psp124BI | GAGCTC | 1 cut(s) | 702 |
| Psp1406I | AACGTT | 4 cut(s) | 1074, 1715, 1894, 2729 |
| Psp5II | RGGWCCY | 2 cut(s) | 385, 2349 |
| Psp6I | CCWGG | 3 cut(s) | 43, 1756, 2676 |
| PspFI | CCCAGC | 1 cut(s) | 709 |
| PspGI | CCWGG | 3 cut(s) | 43, 1756, 2676 |
| PspPI | GGNCC | 6 cut(s) | 385, 1564, 2056, 2124, 2292, 2349 |
| PspPPI | RGGWCCY | 2 cut(s) | 385, 2349 |
| PsuI | RGATCY | 2 cut(s) | 1002, 2014 |
| RsaI | GTAC | 5 cut(s) | 82, 1494, 1762, 2446, 2486 |
| RsaNI | GTAC | 5 cut(s) | 81, 1493, 1761, 2445, 2485 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2045 |
| SacI | GAGCTC | 1 cut(s) | 702 |
| SalI | GTCGAC | 1 cut(s) | 2594 |
| SapI | GCTCTTC | 1 cut(s) | 732 |
| SatI | GCNGC | 3 cut(s) | 20, 775, 2475 |
| Sau96I | GGNCC | 6 cut(s) | 385, 1564, 2056, 2124, 2292, 2349 |
| SchI | GAGTC | 2 cut(s) | 217, 316 |
| ScrFI | CCNGG | 3 cut(s) | 45, 1758, 2678 |
| SduI | GDGCHC | 2 cut(s) | 702, 2579 |
| SexAI | ACCWGGT | 1 cut(s) | 43 |
| SfaNI | GCATC | 5 cut(s) | 958, 1287, 1584, 2350, 2967 |
| SfcI | CTRYAG | 3 cut(s) | 1534, 1723, 2086 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 551 |
| SfoI | GGCGCC | 1 cut(s) | 1018 |
| SfuI | TTCGAA | 1 cut(s) | 1857 |
| SinI | GGWCC | 4 cut(s) | 385, 1564, 2056, 2349 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2045 |
| SpeI | ACTAGT | 1 cut(s) | 2611 |
| SsiI | CCGC | 1 cut(s) | 775 |
| SspDI | GGCGCC | 1 cut(s) | 1016 |
| SspI | AATATT | 1 cut(s) | 2819 |
| SstI | GAGCTC | 1 cut(s) | 702 |
| StyD4I | CCNGG | 3 cut(s) | 43, 1756, 2676 |
| StyI | CCWWGG | 4 cut(s) | 399, 972, 2513, 2690 |
| TaaI | ACNGT | 3 cut(s) | 671, 1465, 1507 |
| TaqI | TCGA | 5 cut(s) | 445, 1519, 1857, 2428, 2595 |
| TauI | GCSGC | 1 cut(s) | 777 |
| TfiI | GAWTC | 4 cut(s) | 439, 1165, 1429, 2673 |
| TscAI | CASTG | 1 cut(s) | 1167 |
| TseFI | GTSAC | 5 cut(s) | 301, 1507, 1934, 2267, 2905 |
| TseI | GCWGC | 2 cut(s) | 19, 2474 |
| Tsp45I | GTSAC | 5 cut(s) | 301, 1507, 1934, 2267, 2905 |
| TspDTI | ATGAA | 9 cut(s) | 209, 214, 227, 772, 937, 1245, 1573, 2673, 2874 |
| TspGWI | ACGGA | 3 cut(s) | 22, 1058, 2048 |
| TspRI | CASTG | 1 cut(s) | 1167 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 47 |
| Vha464I | CTTAAG | 6 cut(s) | 889, 1187, 1301, 1867, 2602, 2768 |
| VpaK11BI | GGWCC | 4 cut(s) | 385, 1564, 2056, 2349 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 784 |
| XapI | RAATTY | 5 cut(s) | 615, 632, 836, 944, 2423 |
| XbaI | TCTAGA | 1 cut(s) | 727 |
| XceI | RCATGY | 2 cut(s) | 2078, 2900 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2638 |
| XmaJI | CCTAGG | 1 cut(s) | 2513 |
| XmiI | GTMKAC | 3 cut(s) | 330, 2595, 2608 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2186, 2424 |
| ZraI | GACGTC | 2 cut(s) | 414, 1269 |
| Zsp2I | ATGCAT | 1 cut(s) | 2982 |