protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 283 - 347 | 1.4e-09 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH | PF17917 | 351 - 406 | 5.6e-16 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH_2 | PF17919 | 353 - 406 | 5.4e-17 | RNase H-like domain found in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 334 |
| Acc36I | ACCTGC | 1 cut(s) | 6 |
| Acc65I | GGTACC | 1 cut(s) | 1019 |
| AccB1I | GGYRCC | 2 cut(s) | 832, 1019 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 573 |
| AccI | GTMKAC | 1 cut(s) | 465 |
| AciI | CCGC | 2 cut(s) | 564, 584 |
| AclWI | GGATC | 3 cut(s) | 239, 252, 806 |
| AcsI | RAATTY | 1 cut(s) | 225 |
| AcuI | CTGAAG | 1 cut(s) | 1280 |
| AcvI | CACGTG | 1 cut(s) | 1370 |
| AcyI | GRCGYC | 2 cut(s) | 331, 862 |
| AfaI | GTAC | 1 cut(s) | 1021 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 100, 175, 573, 1029 |
| AflII | CTTAAG | 2 cut(s) | 340, 1388 |
| AgsI | TTSAA | 3 cut(s) | 70, 457, 776 |
| AhlI | ACTAGT | 1 cut(s) | 490 |
| AjnI | CCWGG | 2 cut(s) | 247, 1015 |
| AleI | CACNNNNGTG | 1 cut(s) | 806 |
| Alw21I | GWGCWC | 2 cut(s) | 1209, 1375 |
| Alw26I | GTCTC | 4 cut(s) | 208, 476, 677, 769 |
| AlwI | GGATC | 3 cut(s) | 239, 252, 806 |
| AoxI | GGCC | 2 cut(s) | 102, 853 |
| ApeKI | GCWGC | 1 cut(s) | 1282 |
| ApoI | RAATTY | 1 cut(s) | 225 |
| Asp718I | GGTACC | 1 cut(s) | 1019 |
| AspS9I | GGNCC | 1 cut(s) | 1056 |
| AsuHPI | GGTGA | 1 cut(s) | 820 |
| AvaII | GGWCC | 1 cut(s) | 1056 |
| BaeGI | GKGCMC | 2 cut(s) | 786, 837 |
| BamHI | GGATCC | 1 cut(s) | 244 |
| BanI | GGYRCC | 2 cut(s) | 832, 1019 |
| BanII | GRGCYC | 1 cut(s) | 1209 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 449, 481 |
| BbrPI | CACGTG | 1 cut(s) | 1370 |
| BbsI | GAAGAC | 1 cut(s) | 953 |
| Bbv12I | GWGCWC | 2 cut(s) | 1209, 1375 |
| BbvI | GCAGC | 1 cut(s) | 1294 |
| BccI | CCATC | 6 cut(s) | 113, 392, 567, 682, 890, 1151 |
| BciT130I | CCWGG | 2 cut(s) | 249, 1017 |
| BciVI | GTATCC | 2 cut(s) | 413, 618 |
| BclI | TGATCA | 1 cut(s) | 1447 |
| BcoDI | GTCTC | 4 cut(s) | 208, 476, 677, 769 |
| BcuI | ACTAGT | 1 cut(s) | 490 |
| BfaI | CTAG | 8 cut(s) | 98, 156, 351, 491, 632, 654, 866, 1344 |
| BfrI | CTTAAG | 2 cut(s) | 340, 1388 |
| BfuAI | ACCTGC | 1 cut(s) | 6 |
| BfuI | GTATCC | 2 cut(s) | 413, 618 |
| BisI | GCNGC | 1 cut(s) | 1283 |
| BlsI | GCNGC | 1 cut(s) | 1284 |
| Bme1390I | CCNGG | 2 cut(s) | 249, 1017 |
| Bme18I | GGWCC | 1 cut(s) | 1056 |
| BmgT120I | GGNCC | 1 cut(s) | 1056 |
| BmiI | GGNNCC | 3 cut(s) | 246, 834, 1021 |
| BmrFI | CCNGG | 2 cut(s) | 249, 1017 |
| BmrI | ACTGGG | 1 cut(s) | 764 |
| BmsI | GCATC | 2 cut(s) | 1072, 1162 |
| BmuI | ACTGGG | 1 cut(s) | 764 |
| BoxI | GACNNNNGTC | 1 cut(s) | 614 |
| BpiI | GAAGAC | 1 cut(s) | 953 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 188, 220, 298, 330 |
| BpmI | CTGGAG | 1 cut(s) | 999 |
| BpuEI | CTTGAG | 3 cut(s) | 449, 1141, 1276 |
| BsaAI | YACGTR | 1 cut(s) | 1370 |
| BsaHI | GRCGYC | 2 cut(s) | 331, 862 |
| BsaI | GGTCTC | 2 cut(s) | 476, 769 |
| BsaJI | CCNNGG | 1 cut(s) | 1310 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 100, 175, 573, 1029 |
| Bse1I | ACTGG | 2 cut(s) | 770, 834 |
| Bse3DI | GCAATG | 1 cut(s) | 317 |
| BseBI | CCWGG | 2 cut(s) | 249, 1017 |
| BseDI | CCNNGG | 1 cut(s) | 1310 |
| BseGI | GGATG | 4 cut(s) | 43, 578, 901, 1423 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 100, 175, 573, 1029 |
| BseMI | GCAATG | 1 cut(s) | 317 |
| BseMII | CTCAG | 2 cut(s) | 810, 918 |
| BseNI | ACTGG | 2 cut(s) | 770, 834 |
| BseRI | GAGGAG | 1 cut(s) | 650 |
| BseSI | GKGCMC | 2 cut(s) | 786, 837 |
| BseXI | GCAGC | 1 cut(s) | 1294 |
| BsgI | GTGCAG | 1 cut(s) | 492 |
| BshFI | GGCC | 2 cut(s) | 104, 855 |
| BshNI | GGYRCC | 2 cut(s) | 832, 1019 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1209, 1375 |
| BslFI | GGGAC | 4 cut(s) | 101, 342, 488, 985 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 100, 175, 573, 1029 |
| BsmAI | GTCTC | 4 cut(s) | 208, 476, 677, 769 |
| BsmBI | CGTCTC | 1 cut(s) | 677 |
| BsmFI | GGGAC | 4 cut(s) | 101, 342, 488, 985 |
| BsmI | GAATGC | 1 cut(s) | 820 |
| BsnI | GGCC | 2 cut(s) | 104, 855 |
| Bso31I | GGTCTC | 2 cut(s) | 476, 769 |
| Bsp1286I | GDGCHC | 4 cut(s) | 786, 837, 1209, 1375 |
| Bsp143I | GATC | 5 cut(s) | 244, 495, 798, 937, 1447 |
| Bsp19I | CCATGG | 1 cut(s) | 1310 |
| BspACI | CCGC | 2 cut(s) | 564, 584 |
| BspANI | GGCC | 2 cut(s) | 104, 855 |
| BspCNI | CTCAG | 2 cut(s) | 811, 917 |
| BspLI | GGNNCC | 3 cut(s) | 246, 834, 1021 |
| BspMI | ACCTGC | 1 cut(s) | 6 |
| BspPI | GGATC | 3 cut(s) | 239, 252, 806 |
| BspT107I | GGYRCC | 2 cut(s) | 832, 1019 |
| BspTI | CTTAAG | 2 cut(s) | 340, 1388 |
| BspTNI | GGTCTC | 2 cut(s) | 476, 769 |
| BsrDI | GCAATG | 1 cut(s) | 317 |
| BsrI | ACTGG | 2 cut(s) | 770, 834 |
| BssECI | CCNNGG | 1 cut(s) | 1310 |
| BssMI | GATC | 5 cut(s) | 244, 495, 798, 937, 1447 |
| BssNI | GRCGYC | 2 cut(s) | 331, 862 |
| BssT1I | CCWWGG | 1 cut(s) | 1310 |
| Bst2UI | CCWGG | 2 cut(s) | 249, 1017 |
| Bst4CI | ACNGT | 4 cut(s) | 170, 805, 847, 1399 |
| Bst6I | CTCTTC | 2 cut(s) | 447, 522 |
| BstACI | GRCGYC | 2 cut(s) | 331, 862 |
| BstAFI | CTTAAG | 2 cut(s) | 340, 1388 |
| BstBAI | YACGTR | 1 cut(s) | 1370 |
| BstC8I | GCNNGC | 1 cut(s) | 376 |
| BstDEI | CTNAG | 5 cut(s) | 30, 120, 469, 819, 904 |
| BstDSI | CCRYGG | 1 cut(s) | 1310 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 98, 1027 |
| BstF5I | GGATG | 4 cut(s) | 43, 578, 901, 1423 |
| BstKTI | GATC | 5 cut(s) | 247, 498, 801, 940, 1450 |
| BstMAI | GTCTC | 4 cut(s) | 208, 476, 677, 769 |
| BstMBI | GATC | 5 cut(s) | 244, 495, 798, 937, 1447 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 861, 906, 1103 |
| BstNI | CCWGG | 2 cut(s) | 249, 1017 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 614 |
| BstSCI | CCNGG | 2 cut(s) | 247, 1015 |
| BstSLI | GKGCMC | 2 cut(s) | 786, 837 |
| BstV1I | GCAGC | 1 cut(s) | 1294 |
| BstV2I | GAAGAC | 1 cut(s) | 953 |
| BstX2I | RGATCY | 1 cut(s) | 244 |
| BstYI | RGATCY | 1 cut(s) | 244 |
| BsuI | GTATCC | 2 cut(s) | 413, 618 |
| BsuRI | GGCC | 2 cut(s) | 104, 855 |
| BtgI | CCRYGG | 1 cut(s) | 1310 |
| BtsCI | GGATG | 4 cut(s) | 43, 578, 901, 1423 |
| BtsIMutI | CAGTG | 1 cut(s) | 801 |
| BveI | ACCTGC | 1 cut(s) | 6 |
| Cac8I | GCNNGC | 1 cut(s) | 376 |
| Cfr13I | GGNCC | 1 cut(s) | 1056 |
| CseI | GACGC | 2 cut(s) | 604, 870 |
| Csp6I | GTAC | 1 cut(s) | 1020 |
| CviAII | CATG | 3 cut(s) | 875, 1311, 1363 |
| CviQI | GTAC | 1 cut(s) | 1020 |
| DdeI | CTNAG | 5 cut(s) | 30, 120, 469, 819, 904 |
| DpnI | GATC | 5 cut(s) | 246, 497, 800, 939, 1449 |
| DpnII | GATC | 5 cut(s) | 244, 495, 798, 937, 1447 |
| Eam1104I | CTCTTC | 2 cut(s) | 447, 522 |
| EarI | CTCTTC | 2 cut(s) | 447, 522 |
| EciI | GGCGGA | 1 cut(s) | 599 |
| Ecl136II | GAGCTC | 1 cut(s) | 1207 |
| Eco130I | CCWWGG | 1 cut(s) | 1310 |
| Eco24I | GRGCYC | 1 cut(s) | 1209 |
| Eco31I | GGTCTC | 2 cut(s) | 476, 769 |
| Eco47I | GGWCC | 1 cut(s) | 1056 |
| Eco53kI | GAGCTC | 1 cut(s) | 1207 |
| Eco57I | CTGAAG | 1 cut(s) | 1280 |
| Eco72I | CACGTG | 1 cut(s) | 1370 |
| EcoICRI | GAGCTC | 1 cut(s) | 1207 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 98, 1027 |
| EcoRII | CCWGG | 2 cut(s) | 247, 1015 |
| EcoT14I | CCWWGG | 1 cut(s) | 1310 |
| EcoT38I | GRGCYC | 1 cut(s) | 1209 |
| ErhI | CCWWGG | 1 cut(s) | 1310 |
| Esp3I | CGTCTC | 1 cut(s) | 677 |
| FaeI | CATG | 3 cut(s) | 878, 1314, 1366 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 470, 502, 938, 970, 1194, 1226 |
| FaqI | GGGAC | 4 cut(s) | 101, 342, 488, 985 |
| FatI | CATG | 3 cut(s) | 874, 1310, 1362 |
| FbaI | TGATCA | 1 cut(s) | 1447 |
| FblI | GTMKAC | 1 cut(s) | 465 |
| Fnu4HI | GCNGC | 1 cut(s) | 1283 |
| FokI | GGATG | 4 cut(s) | 50, 585, 908, 1430 |
| FriOI | GRGCYC | 1 cut(s) | 1209 |
| Fsp4HI | GCNGC | 1 cut(s) | 1283 |
| FspBI | CTAG | 8 cut(s) | 98, 156, 351, 491, 632, 654, 866, 1344 |
| GluI | GCNGC | 1 cut(s) | 1283 |
| GsuI | CTGGAG | 1 cut(s) | 999 |
| HaeIII | GGCC | 2 cut(s) | 104, 855 |
| HgaI | GACGC | 2 cut(s) | 604, 870 |
| Hin1I | GRCGYC | 2 cut(s) | 331, 862 |
| Hin1II | CATG | 3 cut(s) | 878, 1314, 1366 |
| HincII | GTYRAC | 1 cut(s) | 1219 |
| HindII | GTYRAC | 1 cut(s) | 1219 |
| HindIII | AAGCTT | 1 cut(s) | 253 |
| HinfI | GANTC | 7 cut(s) | 214, 296, 517, 752, 1162, 1258, 1351 |
| HphI | GGTGA | 1 cut(s) | 820 |
| Hpy166II | GTNNAC | 5 cut(s) | 85, 166, 466, 1219, 1307 |
| Hpy188I | TCNGA | 7 cut(s) | 219, 271, 751, 1001, 1029, 1090, 1447 |
| Hpy188III | TCNNGA | 8 cut(s) | 70, 409, 446, 632, 941, 1274, 1344, 1355 |
| Hpy8I | GTNNAC | 5 cut(s) | 85, 166, 466, 1219, 1307 |
| Hpy99I | CGWCG | 2 cut(s) | 672, 990 |
| HpyAV | CCTTC | 7 cut(s) | 28, 67, 697, 964, 1006, 1117, 1219 |
| HpyCH4III | ACNGT | 4 cut(s) | 170, 805, 847, 1399 |
| HpyCH4IV | ACGT | 6 cut(s) | 331, 667, 974, 988, 1239, 1369 |
| HpyCH4V | TGCA | 9 cut(s) | 79, 150, 374, 509, 1008, 1097, 1175, 1214, 1319 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 861, 906, 1103 |
| HpyF3I | CTNAG | 5 cut(s) | 30, 120, 469, 819, 904 |
| HpySE526I | ACGT | 6 cut(s) | 331, 667, 974, 988, 1239, 1369 |
| Hsp92I | GRCGYC | 2 cut(s) | 331, 862 |
| Hsp92II | CATG | 3 cut(s) | 878, 1314, 1366 |
| KpnI | GGTACC | 1 cut(s) | 1023 |
| Ksp22I | TGATCA | 1 cut(s) | 1447 |
| Kzo9I | GATC | 5 cut(s) | 244, 495, 798, 937, 1447 |
| LmnI | GCTCC | 3 cut(s) | 1018, 1103, 1212 |
| Lsp1109I | GCAGC | 1 cut(s) | 1294 |
| LweI | GCATC | 2 cut(s) | 1072, 1162 |
| MaeI | CTAG | 8 cut(s) | 98, 156, 351, 491, 632, 654, 866, 1344 |
| MaeII | ACGT | 6 cut(s) | 331, 667, 974, 988, 1239, 1369 |
| MaeIII | GTNAC | 3 cut(s) | 44, 847, 1365 |
| MalI | GATC | 5 cut(s) | 246, 497, 800, 939, 1449 |
| MboI | GATC | 5 cut(s) | 244, 495, 798, 937, 1447 |
| MboII | GAAGA | 7 cut(s) | 370, 434, 539, 712, 823, 947, 958 |
| MflI | RGATCY | 1 cut(s) | 244 |
| MhlI | GDGCHC | 4 cut(s) | 786, 837, 1209, 1375 |
| MluCI | AATT | 4 cut(s) | 225, 918, 1330, 1455 |
| MlyI | GAGTC | 5 cut(s) | 290, 511, 746, 1156, 1267 |
| MmeI | TCCRAC | 1 cut(s) | 1081 |
| MseI | TTAA | 3 cut(s) | 341, 1389, 1401 |
| MslI | CAYNNNNRTG | 1 cut(s) | 806 |
| MspCI | CTTAAG | 2 cut(s) | 340, 1388 |
| MspR9I | CCNGG | 2 cut(s) | 249, 1017 |
| Mva1269I | GAATGC | 1 cut(s) | 820 |
| MvaI | CCWGG | 2 cut(s) | 249, 1017 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 861, 906, 1103 |
| NcoI | CCATGG | 1 cut(s) | 1310 |
| NdeII | GATC | 5 cut(s) | 244, 495, 798, 937, 1447 |
| NlaIII | CATG | 3 cut(s) | 878, 1314, 1366 |
| NlaIV | GGNNCC | 3 cut(s) | 246, 834, 1021 |
| NmuCI | GTSAC | 3 cut(s) | 44, 847, 1365 |
| OliI | CACNNNNGTG | 1 cut(s) | 806 |
| PctI | GAATGC | 1 cut(s) | 820 |
| PfeI | GAWTC | 2 cut(s) | 214, 1351 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 573 |
| PfoI | TCCNGGA | 1 cut(s) | 247 |
| PkrI | GCNGC | 1 cut(s) | 1284 |
| PleI | GAGTC | 5 cut(s) | 290, 511, 746, 1156, 1266 |
| PmaCI | CACGTG | 1 cut(s) | 1370 |
| PmlI | CACGTG | 1 cut(s) | 1370 |
| PpsI | GAGTC | 5 cut(s) | 290, 511, 746, 1156, 1266 |
| Ppu21I | YACGTR | 1 cut(s) | 1370 |
| PshAI | GACNNNNGTC | 1 cut(s) | 614 |
| Psp124BI | GAGCTC | 1 cut(s) | 1209 |
| Psp6I | CCWGG | 2 cut(s) | 247, 1015 |
| PspCI | CACGTG | 1 cut(s) | 1370 |
| PspGI | CCWGG | 2 cut(s) | 247, 1015 |
| PspN4I | GGNNCC | 3 cut(s) | 246, 834, 1021 |
| PspPI | GGNCC | 1 cut(s) | 1056 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 116, 148 |
| PsuI | RGATCY | 1 cut(s) | 244 |
| RsaI | GTAC | 1 cut(s) | 1021 |
| RsaNI | GTAC | 1 cut(s) | 1020 |
| RseI | CAYNNNNRTG | 1 cut(s) | 806 |
| SacI | GAGCTC | 1 cut(s) | 1209 |
| SaqAI | TTAA | 3 cut(s) | 341, 1389, 1401 |
| SatI | GCNGC | 1 cut(s) | 1283 |
| Sau3AI | GATC | 5 cut(s) | 244, 495, 798, 937, 1447 |
| Sau96I | GGNCC | 1 cut(s) | 1056 |
| SchI | GAGTC | 5 cut(s) | 290, 511, 746, 1156, 1267 |
| ScrFI | CCNGG | 2 cut(s) | 249, 1017 |
| SduI | GDGCHC | 4 cut(s) | 786, 837, 1209, 1375 |
| SfaNI | GCATC | 2 cut(s) | 1072, 1162 |
| SinI | GGWCC | 1 cut(s) | 1056 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 806 |
| SmlI | CTYRAG | 5 cut(s) | 340, 428, 1156, 1255, 1388 |
| SmoI | CTYRAG | 5 cut(s) | 340, 428, 1156, 1255, 1388 |
| SpeI | ACTAGT | 1 cut(s) | 490 |
| Sse9I | AATT | 4 cut(s) | 225, 918, 1330, 1455 |
| SsiI | CCGC | 2 cut(s) | 564, 584 |
| SspMI | CTAG | 8 cut(s) | 98, 156, 351, 491, 632, 654, 866, 1344 |
| SstI | GAGCTC | 1 cut(s) | 1209 |
| StyD4I | CCNGG | 2 cut(s) | 247, 1015 |
| StyI | CCWWGG | 1 cut(s) | 1310 |
| TaaI | ACNGT | 4 cut(s) | 170, 805, 847, 1399 |
| TaiI | ACGT | 6 cut(s) | 334, 670, 977, 991, 1242, 1372 |
| TaqI | TCGA | 1 cut(s) | 985 |
| TasI | AATT | 4 cut(s) | 225, 918, 1330, 1455 |
| TfiI | GAWTC | 2 cut(s) | 214, 1351 |
| Tru1I | TTAA | 3 cut(s) | 341, 1389, 1401 |
| Tru9I | TTAA | 3 cut(s) | 341, 1389, 1401 |
| TscAI | CASTG | 1 cut(s) | 808 |
| TseFI | GTSAC | 3 cut(s) | 44, 847, 1365 |
| TseI | GCWGC | 1 cut(s) | 1282 |
| Tsp45I | GTSAC | 3 cut(s) | 44, 847, 1365 |
| TspDTI | ATGAA | 5 cut(s) | 54, 428, 948, 1196, 1434 |
| TspGWI | ACGGA | 2 cut(s) | 255, 1211 |
| TspRI | CASTG | 1 cut(s) | 808 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 573 |
| Vha464I | CTTAAG | 2 cut(s) | 340, 1388 |
| VpaK11BI | GGWCC | 1 cut(s) | 1056 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 98, 1027 |
| XapI | RAATTY | 1 cut(s) | 225 |
| XbaI | TCTAGA | 2 cut(s) | 631, 1343 |
| XmiI | GTMKAC | 1 cut(s) | 465 |
| XspI | CTAG | 8 cut(s) | 98, 156, 351, 491, 632, 654, 866, 1344 |
| ZraI | GACGTC | 1 cut(s) | 332 |