transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1279 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1376 |
| AciI | CCGC | 1 cut(s) | 494 |
| AclI | AACGTT | 1 cut(s) | 637 |
| AclWI | GGATC | 4 cut(s) | 68, 222, 524, 1103 |
| AcsI | RAATTY | 5 cut(s) | 45, 205, 986, 1228, 1382 |
| AcuI | CTGAAG | 1 cut(s) | 677 |
| AfaI | GTAC | 1 cut(s) | 1390 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1279, 1376 |
| AflIII | ACRYGT | 1 cut(s) | 268 |
| AjnI | CCWGG | 4 cut(s) | 57, 532, 825, 1198 |
| AluBI | AGCT | 6 cut(s) | 248, 317, 451, 655, 761, 917 |
| AluI | AGCT | 6 cut(s) | 248, 317, 451, 655, 761, 917 |
| Alw21I | GWGCWC | 1 cut(s) | 1344 |
| Alw26I | GTCTC | 2 cut(s) | 1243, 1263 |
| AlwI | GGATC | 4 cut(s) | 68, 222, 524, 1103 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 191, 200 |
| AoxI | GGCC | 3 cut(s) | 308, 814, 1270 |
| ApaI | GGGCCC | 1 cut(s) | 1274 |
| ApeKI | GCWGC | 2 cut(s) | 131, 214 |
| ApoI | RAATTY | 5 cut(s) | 45, 205, 986, 1228, 1382 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1220, 1252 |
| AseI | ATTAAT | 2 cut(s) | 369, 380 |
| AspS9I | GGNCC | 4 cut(s) | 814, 1126, 1270, 1271 |
| AsuC2I | CCSGG | 2 cut(s) | 838, 878 |
| AsuHPI | GGTGA | 2 cut(s) | 656, 1294 |
| AvaII | GGWCC | 1 cut(s) | 1126 |
| BaeGI | GKGCMC | 1 cut(s) | 1274 |
| BanII | GRGCYC | 1 cut(s) | 1274 |
| BbsI | GAAGAC | 1 cut(s) | 353 |
| Bbv12I | GWGCWC | 1 cut(s) | 1344 |
| BbvI | GCAGC | 2 cut(s) | 143, 226 |
| BccI | CCATC | 4 cut(s) | 412, 812, 962, 1117 |
| BceAI | ACGGC | 1 cut(s) | 801 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 221, 255 |
| BciT130I | CCWGG | 4 cut(s) | 59, 534, 827, 1200 |
| BcnI | CCSGG | 2 cut(s) | 838, 878 |
| BcoDI | GTCTC | 2 cut(s) | 1243, 1263 |
| BfaI | CTAG | 3 cut(s) | 603, 708, 1244 |
| BfmI | CTRYAG | 2 cut(s) | 192, 240 |
| BfuAI | ACCTGC | 1 cut(s) | 1279 |
| BisI | GCNGC | 2 cut(s) | 132, 215 |
| BlsI | GCNGC | 2 cut(s) | 133, 216 |
| Bme1390I | CCNGG | 6 cut(s) | 59, 534, 827, 838, 878, 1200 |
| Bme18I | GGWCC | 1 cut(s) | 1126 |
| BmgT120I | GGNCC | 4 cut(s) | 814, 1126, 1270, 1271 |
| BmiI | GGNNCC | 2 cut(s) | 1272, 1416 |
| BmrFI | CCNGG | 6 cut(s) | 59, 534, 827, 838, 878, 1200 |
| BmsI | GCATC | 2 cut(s) | 376, 949 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1255 |
| BpiI | GAAGAC | 1 cut(s) | 353 |
| BpmI | CTGGAG | 1 cut(s) | 652 |
| BpuEI | CTTGAG | 1 cut(s) | 1328 |
| BpuMI | CCSGG | 2 cut(s) | 838, 878 |
| Bsa29I | ATCGAT | 1 cut(s) | 72 |
| BsaJI | CCNNGG | 2 cut(s) | 57, 533 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1279, 1376 |
| Bse1I | ACTGG | 1 cut(s) | 1418 |
| BseBI | CCWGG | 4 cut(s) | 59, 534, 827, 1200 |
| BseCI | ATCGAT | 1 cut(s) | 72 |
| BseDI | CCNNGG | 2 cut(s) | 57, 533 |
| BseGI | GGATG | 2 cut(s) | 790, 925 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1279, 1376 |
| BseMII | CTCAG | 2 cut(s) | 288, 1386 |
| BseNI | ACTGG | 1 cut(s) | 1418 |
| BseRI | GAGGAG | 1 cut(s) | 726 |
| BseSI | GKGCMC | 1 cut(s) | 1274 |
| BseXI | GCAGC | 2 cut(s) | 143, 226 |
| BsgI | GTGCAG | 1 cut(s) | 508 |
| BshFI | GGCC | 3 cut(s) | 310, 816, 1272 |
| BshVI | ATCGAT | 1 cut(s) | 72 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1344 |
| BsiSI | CCGG | 3 cut(s) | 838, 861, 877 |
| BslFI | GGGAC | 1 cut(s) | 8 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1279, 1376 |
| BsmAI | GTCTC | 2 cut(s) | 1243, 1263 |
| BsmFI | GGGAC | 1 cut(s) | 8 |
| BsmI | GAATGC | 1 cut(s) | 950 |
| BsnI | GGCC | 3 cut(s) | 310, 816, 1272 |
| Bsp120I | GGGCCC | 1 cut(s) | 1270 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1274, 1344 |
| Bsp143I | GATC | 9 cut(s) | 69, 73, 227, 322, 529, 886, 998, 1108, 1422 |
| BspACI | CCGC | 1 cut(s) | 494 |
| BspANI | GGCC | 3 cut(s) | 310, 816, 1272 |
| BspCNI | CTCAG | 2 cut(s) | 289, 1387 |
| BspDI | ATCGAT | 1 cut(s) | 72 |
| BspLI | GGNNCC | 2 cut(s) | 1272, 1416 |
| BspMAI | CTGCAG | 2 cut(s) | 196, 244 |
| BspMI | ACCTGC | 1 cut(s) | 1279 |
| BspPI | GGATC | 4 cut(s) | 68, 222, 524, 1103 |
| BsrI | ACTGG | 1 cut(s) | 1418 |
| BssECI | CCNNGG | 2 cut(s) | 57, 533 |
| BssMI | GATC | 9 cut(s) | 69, 73, 227, 322, 529, 886, 998, 1108, 1422 |
| Bst2UI | CCWGG | 4 cut(s) | 59, 534, 827, 1200 |
| Bst4CI | ACNGT | 5 cut(s) | 330, 486, 692, 895, 1304 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 191, 200 |
| BstC8I | GCNNGC | 1 cut(s) | 950 |
| BstDEI | CTNAG | 3 cut(s) | 297, 595, 1395 |
| BstF5I | GGATG | 2 cut(s) | 790, 925 |
| BstKTI | GATC | 9 cut(s) | 72, 76, 230, 325, 532, 889, 1001, 1111, 1425 |
| BstMAI | GTCTC | 2 cut(s) | 1243, 1263 |
| BstMBI | GATC | 9 cut(s) | 69, 73, 227, 322, 529, 886, 998, 1108, 1422 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 191, 200, 286, 1090 |
| BstNI | CCWGG | 4 cut(s) | 59, 534, 827, 1200 |
| BstNSI | RCATGY | 2 cut(s) | 107, 952 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1255 |
| BstSCI | CCNGG | 6 cut(s) | 57, 532, 825, 836, 876, 1198 |
| BstSFI | CTRYAG | 2 cut(s) | 192, 240 |
| BstSLI | GKGCMC | 1 cut(s) | 1274 |
| BstV1I | GCAGC | 2 cut(s) | 143, 226 |
| BstV2I | GAAGAC | 1 cut(s) | 353 |
| BstX2I | RGATCY | 3 cut(s) | 227, 529, 1108 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 811 |
| BstYI | RGATCY | 3 cut(s) | 227, 529, 1108 |
| Bsu15I | ATCGAT | 1 cut(s) | 72 |
| BsuRI | GGCC | 3 cut(s) | 310, 816, 1272 |
| BsuTUI | ATCGAT | 1 cut(s) | 72 |
| BtsCI | GGATG | 2 cut(s) | 790, 925 |
| BtsI | GCAGTG | 1 cut(s) | 496 |
| BtsIMutI | CAGTG | 3 cut(s) | 491, 496, 1425 |
| BveI | ACCTGC | 1 cut(s) | 1279 |
| Cac8I | GCNNGC | 1 cut(s) | 950 |
| CaiI | CAGNNNCTG | 2 cut(s) | 191, 200 |
| Cfr13I | GGNCC | 4 cut(s) | 814, 1126, 1270, 1271 |
| ClaI | ATCGAT | 1 cut(s) | 72 |
| CseI | GACGC | 1 cut(s) | 10 |
| Csp6I | GTAC | 1 cut(s) | 1389 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 241, 276 |
| CviAII | CATG | 7 cut(s) | 104, 781, 930, 949, 980, 1169, 1371 |
| CviQI | GTAC | 1 cut(s) | 1389 |
| DdeI | CTNAG | 3 cut(s) | 297, 595, 1395 |
| DpnI | GATC | 9 cut(s) | 71, 75, 229, 324, 531, 888, 1000, 1110, 1424 |
| DpnII | GATC | 9 cut(s) | 69, 73, 227, 322, 529, 886, 998, 1108, 1422 |
| DraI | TTTAAA | 1 cut(s) | 634 |
| Eco147I | AGGCCT | 1 cut(s) | 310 |
| Eco24I | GRGCYC | 1 cut(s) | 1274 |
| Eco47I | GGWCC | 1 cut(s) | 1126 |
| Eco57I | CTGAAG | 1 cut(s) | 677 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1270, 1271 |
| EcoRII | CCWGG | 4 cut(s) | 57, 532, 825, 1198 |
| EcoT22I | ATGCAT | 4 cut(s) | 6, 950, 964, 1376 |
| EcoT38I | GRGCYC | 1 cut(s) | 1274 |
| FaeI | CATG | 7 cut(s) | 107, 784, 933, 952, 983, 1172, 1374 |
| FaqI | GGGAC | 1 cut(s) | 8 |
| FatI | CATG | 7 cut(s) | 103, 780, 929, 948, 979, 1168, 1370 |
| Fnu4HI | GCNGC | 2 cut(s) | 132, 215 |
| FokI | GGATG | 2 cut(s) | 797, 912 |
| FriOI | GRGCYC | 1 cut(s) | 1274 |
| Fsp4HI | GCNGC | 2 cut(s) | 132, 215 |
| FspBI | CTAG | 3 cut(s) | 603, 708, 1244 |
| GluI | GCNGC | 2 cut(s) | 132, 215 |
| GsuI | CTGGAG | 1 cut(s) | 652 |
| HaeIII | GGCC | 3 cut(s) | 310, 816, 1272 |
| HapII | CCGG | 3 cut(s) | 838, 861, 877 |
| HgaI | GACGC | 1 cut(s) | 10 |
| Hin1II | CATG | 7 cut(s) | 107, 784, 933, 952, 983, 1172, 1374 |
| HincII | GTYRAC | 2 cut(s) | 333, 742 |
| HindII | GTYRAC | 2 cut(s) | 333, 742 |
| HindIII | AAGCTT | 1 cut(s) | 449 |
| HpaII | CCGG | 3 cut(s) | 838, 861, 877 |
| HphI | GGTGA | 2 cut(s) | 656, 1294 |
| Hpy166II | GTNNAC | 4 cut(s) | 333, 610, 742, 1312 |
| Hpy188I | TCNGA | 5 cut(s) | 232, 366, 463, 1113, 1427 |
| Hpy188III | TCNNGA | 6 cut(s) | 156, 296, 394, 1043, 1147, 1351 |
| Hpy8I | GTNNAC | 4 cut(s) | 333, 610, 742, 1312 |
| HpyAV | CCTTC | 2 cut(s) | 641, 1261 |
| HpyCH4III | ACNGT | 5 cut(s) | 330, 486, 692, 895, 1304 |
| HpyCH4IV | ACGT | 3 cut(s) | 268, 637, 1308 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 191, 200, 286, 1090 |
| HpyF3I | CTNAG | 3 cut(s) | 297, 595, 1395 |
| HpySE526I | ACGT | 3 cut(s) | 268, 637, 1308 |
| Hsp92II | CATG | 7 cut(s) | 107, 784, 933, 952, 983, 1172, 1374 |
| Kzo9I | GATC | 9 cut(s) | 69, 73, 227, 322, 529, 886, 998, 1108, 1422 |
| Lsp1109I | GCAGC | 2 cut(s) | 143, 226 |
| LweI | GCATC | 2 cut(s) | 376, 949 |
| MaeI | CTAG | 3 cut(s) | 603, 708, 1244 |
| MaeII | ACGT | 3 cut(s) | 268, 637, 1308 |
| MaeIII | GTNAC | 3 cut(s) | 28, 991, 1304 |
| MalI | GATC | 9 cut(s) | 71, 75, 229, 324, 531, 888, 1000, 1110, 1424 |
| MboI | GATC | 9 cut(s) | 69, 73, 227, 322, 529, 886, 998, 1108, 1422 |
| MboII | GAAGA | 4 cut(s) | 358, 535, 734, 896 |
| MfeI | CAATTG | 3 cut(s) | 680, 1005, 1079 |
| MflI | RGATCY | 3 cut(s) | 227, 529, 1108 |
| MhlI | GDGCHC | 2 cut(s) | 1274, 1344 |
| MlyI | GAGTC | 6 cut(s) | 723, 835, 1021, 1265, 1399, 1406 |
| MmeI | TCCRAC | 2 cut(s) | 43, 756 |
| Mph1103I | ATGCAT | 4 cut(s) | 6, 950, 964, 1376 |
| MseI | TTAA | 9 cut(s) | 8, 369, 380, 587, 614, 633, 735, 1220, 1365 |
| MslI | CAYNNNNRTG | 3 cut(s) | 928, 930, 1140 |
| MspA1I | CMGCKG | 1 cut(s) | 761 |
| MspI | CCGG | 3 cut(s) | 838, 861, 877 |
| MspR9I | CCNGG | 6 cut(s) | 59, 534, 827, 838, 878, 1200 |
| MunI | CAATTG | 3 cut(s) | 680, 1005, 1079 |
| Mva1269I | GAATGC | 1 cut(s) | 950 |
| MvaI | CCWGG | 4 cut(s) | 59, 534, 827, 1200 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 191, 200, 286, 1090 |
| NciI | CCSGG | 2 cut(s) | 838, 878 |
| NdeII | GATC | 9 cut(s) | 69, 73, 227, 322, 529, 886, 998, 1108, 1422 |
| NlaIII | CATG | 7 cut(s) | 107, 784, 933, 952, 983, 1172, 1374 |
| NlaIV | GGNNCC | 2 cut(s) | 1272, 1416 |
| NmuCI | GTSAC | 1 cut(s) | 991 |
| NsiI | ATGCAT | 4 cut(s) | 6, 950, 964, 1376 |
| NspI | RCATGY | 2 cut(s) | 107, 952 |
| PaeI | GCATGC | 1 cut(s) | 952 |
| PceI | AGGCCT | 1 cut(s) | 310 |
| PctI | GAATGC | 1 cut(s) | 950 |
| PfeI | GAWTC | 6 cut(s) | 152, 188, 197, 458, 472, 1039 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1376 |
| PkrI | GCNGC | 2 cut(s) | 133, 216 |
| PleI | GAGTC | 6 cut(s) | 722, 835, 1021, 1264, 1399, 1405 |
| PpsI | GAGTC | 6 cut(s) | 722, 835, 1021, 1264, 1399, 1405 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1255 |
| PshBI | ATTAAT | 2 cut(s) | 369, 380 |
| Psp1406I | AACGTT | 1 cut(s) | 637 |
| Psp6I | CCWGG | 4 cut(s) | 57, 532, 825, 1198 |
| PspGI | CCWGG | 4 cut(s) | 57, 532, 825, 1198 |
| PspN4I | GGNNCC | 2 cut(s) | 1272, 1416 |
| PspOMI | GGGCCC | 1 cut(s) | 1270 |
| PspPI | GGNCC | 4 cut(s) | 814, 1126, 1270, 1271 |
| PstI | CTGCAG | 2 cut(s) | 196, 244 |
| PstNI | CAGNNNCTG | 2 cut(s) | 191, 200 |
| PsuI | RGATCY | 3 cut(s) | 227, 529, 1108 |
| PvuII | CAGCTG | 1 cut(s) | 761 |
| RsaI | GTAC | 1 cut(s) | 1390 |
| RsaNI | GTAC | 1 cut(s) | 1389 |
| RseI | CAYNNNNRTG | 3 cut(s) | 928, 930, 1140 |
| SaqAI | TTAA | 9 cut(s) | 8, 369, 380, 587, 614, 633, 735, 1220, 1365 |
| SatI | GCNGC | 2 cut(s) | 132, 215 |
| Sau3AI | GATC | 9 cut(s) | 69, 73, 227, 322, 529, 886, 998, 1108, 1422 |
| Sau96I | GGNCC | 4 cut(s) | 814, 1126, 1270, 1271 |
| SchI | GAGTC | 6 cut(s) | 723, 835, 1021, 1265, 1399, 1406 |
| ScrFI | CCNGG | 6 cut(s) | 59, 534, 827, 838, 878, 1200 |
| SduI | GDGCHC | 2 cut(s) | 1274, 1344 |
| SfaNI | GCATC | 2 cut(s) | 376, 949 |
| SfcI | CTRYAG | 2 cut(s) | 192, 240 |
| SinI | GGWCC | 1 cut(s) | 1126 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 928, 930, 1140 |
| SmlI | CTYRAG | 1 cut(s) | 1343 |
| SmoI | CTYRAG | 1 cut(s) | 1343 |
| SphI | GCATGC | 1 cut(s) | 952 |
| SseBI | AGGCCT | 1 cut(s) | 310 |
| SsiI | CCGC | 1 cut(s) | 494 |
| SspI | AATATT | 1 cut(s) | 178 |
| SspMI | CTAG | 3 cut(s) | 603, 708, 1244 |
| StuI | AGGCCT | 1 cut(s) | 310 |
| StyD4I | CCNGG | 6 cut(s) | 57, 532, 825, 836, 876, 1198 |
| TaaI | ACNGT | 5 cut(s) | 330, 486, 692, 895, 1304 |
| TaiI | ACGT | 3 cut(s) | 271, 640, 1311 |
| TaqI | TCGA | 2 cut(s) | 72, 325 |
| TaqII | GACCGA | 1 cut(s) | 1143 |
| TfiI | GAWTC | 6 cut(s) | 152, 188, 197, 458, 472, 1039 |
| Tru1I | TTAA | 9 cut(s) | 8, 369, 380, 587, 614, 633, 735, 1220, 1365 |
| Tru9I | TTAA | 9 cut(s) | 8, 369, 380, 587, 614, 633, 735, 1220, 1365 |
| TscAI | CASTG | 3 cut(s) | 491, 496, 1425 |
| TseFI | GTSAC | 1 cut(s) | 991 |
| TseI | GCWGC | 2 cut(s) | 131, 214 |
| Tsp45I | GTSAC | 1 cut(s) | 991 |
| TspDTI | ATGAA | 3 cut(s) | 114, 359, 1286 |
| TspRI | CASTG | 3 cut(s) | 491, 496, 1425 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1376 |
| VpaK11BI | GGWCC | 1 cut(s) | 1126 |
| VspI | ATTAAT | 2 cut(s) | 369, 380 |
| XapI | RAATTY | 5 cut(s) | 45, 205, 986, 1228, 1382 |
| XceI | RCATGY | 2 cut(s) | 107, 952 |
| XspI | CTAG | 3 cut(s) | 603, 708, 1244 |
| Zsp2I | ATGCAT | 4 cut(s) | 6, 950, 964, 1376 |