transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 35 - 197 | 2.4e-30 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 716 |
| AccI | GTMKAC | 1 cut(s) | 615 |
| AccIII | TCCGGA | 1 cut(s) | 569 |
| AciI | CCGC | 2 cut(s) | 4, 168 |
| AclWI | GGATC | 1 cut(s) | 685 |
| AcsI | RAATTY | 2 cut(s) | 210, 861 |
| AfaI | GTAC | 2 cut(s) | 60, 331 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 174 |
| AflIII | ACRYGT | 1 cut(s) | 317 |
| AgsI | TTSAA | 8 cut(s) | 281, 293, 386, 434, 611, 632, 809, 874 |
| AlwI | GGATC | 1 cut(s) | 685 |
| Ama87I | CYCGRG | 1 cut(s) | 262 |
| Aor13HI | TCCGGA | 1 cut(s) | 569 |
| AoxI | GGCC | 1 cut(s) | 229 |
| ApoI | RAATTY | 2 cut(s) | 210, 861 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 758, 790 |
| AseI | ATTAAT | 1 cut(s) | 815 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 108 |
| AspLEI | GCGC | 1 cut(s) | 138 |
| AspS9I | GGNCC | 1 cut(s) | 562 |
| AsuHPI | GGTGA | 2 cut(s) | 94, 476 |
| AvaI | CYCGRG | 1 cut(s) | 262 |
| AvaII | GGWCC | 1 cut(s) | 562 |
| BccI | CCATC | 2 cut(s) | 248, 856 |
| BclI | TGATCA | 2 cut(s) | 84, 205 |
| BfaI | CTAG | 7 cut(s) | 117, 129, 174, 251, 494, 738, 890 |
| BfmI | CTRYAG | 1 cut(s) | 151 |
| Bme18I | GGWCC | 1 cut(s) | 562 |
| BmeT110I | CYCGRG | 1 cut(s) | 262 |
| BmgT120I | GGNCC | 1 cut(s) | 562 |
| BmiI | GGNNCC | 2 cut(s) | 111, 564 |
| BmsI | GCATC | 3 cut(s) | 380, 778, 876 |
| Bsa29I | ATCGAT | 1 cut(s) | 854 |
| BsaWI | WCCGGW | 1 cut(s) | 569 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 820, 850 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 174 |
| Bse3DI | GCAATG | 1 cut(s) | 821 |
| BseAI | TCCGGA | 1 cut(s) | 569 |
| BseCI | ATCGAT | 1 cut(s) | 854 |
| BseGI | GGATG | 1 cut(s) | 451 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BseMI | GCAATG | 1 cut(s) | 821 |
| BshFI | GGCC | 1 cut(s) | 231 |
| BshVI | ATCGAT | 1 cut(s) | 854 |
| BsiHKCI | CYCGRG | 1 cut(s) | 262 |
| BsiSI | CCGG | 1 cut(s) | 570 |
| BslFI | GGGAC | 1 cut(s) | 548 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BsmFI | GGGAC | 1 cut(s) | 548 |
| BsmI | GAATGC | 2 cut(s) | 354, 485 |
| BsnI | GGCC | 1 cut(s) | 231 |
| BsoBI | CYCGRG | 1 cut(s) | 262 |
| Bsp13I | TCCGGA | 1 cut(s) | 569 |
| Bsp143I | GATC | 5 cut(s) | 84, 181, 205, 295, 677 |
| BspACI | CCGC | 2 cut(s) | 4, 168 |
| BspANI | GGCC | 1 cut(s) | 231 |
| BspDI | ATCGAT | 1 cut(s) | 854 |
| BspEI | TCCGGA | 1 cut(s) | 569 |
| BspLI | GGNNCC | 2 cut(s) | 111, 564 |
| BspPI | GGATC | 1 cut(s) | 685 |
| BsrDI | GCAATG | 1 cut(s) | 821 |
| BssMI | GATC | 5 cut(s) | 84, 181, 205, 295, 677 |
| Bst4CI | ACNGT | 1 cut(s) | 82 |
| Bst6I | CTCTTC | 1 cut(s) | 513 |
| BstC8I | GCNNGC | 1 cut(s) | 229 |
| BstDEI | CTNAG | 3 cut(s) | 63, 600, 624 |
| BstF5I | GGATG | 1 cut(s) | 451 |
| BstHHI | GCGC | 1 cut(s) | 138 |
| BstKTI | GATC | 5 cut(s) | 87, 184, 208, 298, 680 |
| BstMBI | GATC | 5 cut(s) | 84, 181, 205, 295, 677 |
| BstNSI | RCATGY | 3 cut(s) | 142, 321, 695 |
| BstSFI | CTRYAG | 1 cut(s) | 151 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 780 |
| Bsu15I | ATCGAT | 1 cut(s) | 854 |
| BsuRI | GGCC | 1 cut(s) | 231 |
| BsuTUI | ATCGAT | 1 cut(s) | 854 |
| BtsCI | GGATG | 1 cut(s) | 451 |
| BtsIMutI | CAGTG | 1 cut(s) | 733 |
| Cac8I | GCNNGC | 1 cut(s) | 229 |
| CfoI | GCGC | 1 cut(s) | 138 |
| Cfr13I | GGNCC | 1 cut(s) | 562 |
| ClaI | ATCGAT | 1 cut(s) | 854 |
| Csp6I | GTAC | 2 cut(s) | 59, 330 |
| CviAII | CATG | 7 cut(s) | 139, 233, 318, 394, 442, 559, 692 |
| CviJI | RGCY | 1 cut(s) | 231 |
| CviKI_1 | RGCY | 1 cut(s) | 231 |
| CviQI | GTAC | 2 cut(s) | 59, 330 |
| DdeI | CTNAG | 3 cut(s) | 63, 600, 624 |
| DpnI | GATC | 5 cut(s) | 86, 183, 207, 297, 679 |
| DpnII | GATC | 5 cut(s) | 84, 181, 205, 295, 677 |
| Eam1104I | CTCTTC | 1 cut(s) | 513 |
| EarI | CTCTTC | 1 cut(s) | 513 |
| Eco47I | GGWCC | 1 cut(s) | 562 |
| Eco88I | CYCGRG | 1 cut(s) | 262 |
| EcoT22I | ATGCAT | 1 cut(s) | 395 |
| FaeI | CATG | 7 cut(s) | 142, 236, 321, 397, 445, 562, 695 |
| FaqI | GGGAC | 1 cut(s) | 548 |
| FatI | CATG | 7 cut(s) | 138, 232, 317, 393, 441, 558, 691 |
| FbaI | TGATCA | 2 cut(s) | 84, 205 |
| FblI | GTMKAC | 1 cut(s) | 615 |
| FokI | GGATG | 1 cut(s) | 458 |
| FspBI | CTAG | 7 cut(s) | 117, 129, 174, 251, 494, 738, 890 |
| GlaI | GCGC | 1 cut(s) | 137 |
| HaeIII | GGCC | 1 cut(s) | 231 |
| HapII | CCGG | 1 cut(s) | 570 |
| HhaI | GCGC | 1 cut(s) | 138 |
| Hin1II | CATG | 7 cut(s) | 142, 236, 321, 397, 445, 562, 695 |
| Hin6I | GCGC | 1 cut(s) | 136 |
| HinP1I | GCGC | 1 cut(s) | 136 |
| HinfI | GANTC | 2 cut(s) | 467, 538 |
| HpaII | CCGG | 1 cut(s) | 570 |
| HphI | GGTGA | 2 cut(s) | 94, 476 |
| Hpy166II | GTNNAC | 1 cut(s) | 616 |
| Hpy188I | TCNGA | 1 cut(s) | 537 |
| Hpy188III | TCNNGA | 9 cut(s) | 72, 88, 251, 299, 431, 494, 542, 570, 738 |
| Hpy8I | GTNNAC | 1 cut(s) | 616 |
| HpyAV | CCTTC | 1 cut(s) | 576 |
| HpyCH4III | ACNGT | 1 cut(s) | 82 |
| HpyCH4IV | ACGT | 1 cut(s) | 332 |
| HpyCH4V | TGCA | 5 cut(s) | 144, 227, 393, 821, 901 |
| HpyF3I | CTNAG | 3 cut(s) | 63, 600, 624 |
| HpySE526I | ACGT | 1 cut(s) | 332 |
| Hsp92II | CATG | 7 cut(s) | 142, 236, 321, 397, 445, 562, 695 |
| HspAI | GCGC | 1 cut(s) | 136 |
| Kpn2I | TCCGGA | 1 cut(s) | 569 |
| Ksp22I | TGATCA | 2 cut(s) | 84, 205 |
| Kzo9I | GATC | 5 cut(s) | 84, 181, 205, 295, 677 |
| LpnPI | CCDG | 6 cut(s) | 57, 213, 387, 583, 663, 681 |
| LweI | GCATC | 3 cut(s) | 380, 778, 876 |
| MaeI | CTAG | 7 cut(s) | 117, 129, 174, 251, 494, 738, 890 |
| MaeII | ACGT | 1 cut(s) | 332 |
| MaeIII | GTNAC | 3 cut(s) | 257, 584, 892 |
| MalI | GATC | 5 cut(s) | 86, 183, 207, 297, 679 |
| MboI | GATC | 5 cut(s) | 84, 181, 205, 295, 677 |
| MboII | GAAGA | 4 cut(s) | 305, 530, 588, 825 |
| MmeI | TCCRAC | 1 cut(s) | 655 |
| Mph1103I | ATGCAT | 1 cut(s) | 395 |
| MroI | TCCGGA | 1 cut(s) | 569 |
| MroXI | GAANNNNTTC | 1 cut(s) | 108 |
| MseI | TTAA | 2 cut(s) | 162, 815 |
| MspI | CCGG | 1 cut(s) | 570 |
| Mva1269I | GAATGC | 2 cut(s) | 354, 485 |
| NdeII | GATC | 5 cut(s) | 84, 181, 205, 295, 677 |
| NlaIII | CATG | 7 cut(s) | 142, 236, 321, 397, 445, 562, 695 |
| NlaIV | GGNNCC | 2 cut(s) | 111, 564 |
| NmuCI | GTSAC | 2 cut(s) | 584, 892 |
| NsiI | ATGCAT | 1 cut(s) | 395 |
| NspI | RCATGY | 3 cut(s) | 142, 321, 695 |
| PciI | ACATGT | 1 cut(s) | 317 |
| PctI | GAATGC | 2 cut(s) | 354, 485 |
| PdmI | GAANNNNTTC | 1 cut(s) | 108 |
| PfeI | GAWTC | 2 cut(s) | 467, 538 |
| PscI | ACATGT | 1 cut(s) | 317 |
| PshBI | ATTAAT | 1 cut(s) | 815 |
| PsiI | TTATAA | 1 cut(s) | 716 |
| PspN4I | GGNNCC | 2 cut(s) | 111, 564 |
| PspPI | GGNCC | 1 cut(s) | 562 |
| RsaI | GTAC | 2 cut(s) | 60, 331 |
| RsaNI | GTAC | 2 cut(s) | 59, 330 |
| SaqAI | TTAA | 2 cut(s) | 162, 815 |
| Sau3AI | GATC | 5 cut(s) | 84, 181, 205, 295, 677 |
| Sau96I | GGNCC | 1 cut(s) | 562 |
| SetI | ASST | 5 cut(s) | 64, 199, 335, 652, 745 |
| SfaNI | GCATC | 3 cut(s) | 380, 778, 876 |
| SfcI | CTRYAG | 1 cut(s) | 151 |
| SinI | GGWCC | 1 cut(s) | 562 |
| SsiI | CCGC | 2 cut(s) | 4, 168 |
| SspMI | CTAG | 7 cut(s) | 117, 129, 174, 251, 494, 738, 890 |
| TaaI | ACNGT | 1 cut(s) | 82 |
| TaiI | ACGT | 1 cut(s) | 335 |
| TaqI | TCGA | 3 cut(s) | 25, 298, 854 |
| TfiI | GAWTC | 2 cut(s) | 467, 538 |
| Tru1I | TTAA | 2 cut(s) | 162, 815 |
| Tru9I | TTAA | 2 cut(s) | 162, 815 |
| TscAI | CASTG | 1 cut(s) | 733 |
| TseFI | GTSAC | 2 cut(s) | 584, 892 |
| Tsp45I | GTSAC | 2 cut(s) | 584, 892 |
| TspDTI | ATGAA | 6 cut(s) | 117, 190, 430, 459, 492, 547 |
| TspRI | CASTG | 1 cut(s) | 733 |
| VpaK11BI | GGWCC | 1 cut(s) | 562 |
| VspI | ATTAAT | 1 cut(s) | 815 |
| XapI | RAATTY | 2 cut(s) | 210, 861 |
| XbaI | TCTAGA | 3 cut(s) | 250, 493, 737 |
| XceI | RCATGY | 3 cut(s) | 142, 321, 695 |
| XmiI | GTMKAC | 1 cut(s) | 615 |
| XmnI | GAANNNNTTC | 1 cut(s) | 108 |
| XspI | CTAG | 7 cut(s) | 117, 129, 174, 251, 494, 738, 890 |
| Zsp2I | ATGCAT | 1 cut(s) | 395 |