transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 24, 99, 306 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 44 |
| AflII | CTTAAG | 1 cut(s) | 316 |
| AgsI | TTSAA | 4 cut(s) | 14, 247, 305, 337 |
| AjnI | CCWGG | 1 cut(s) | 235 |
| Alw26I | GTCTC | 3 cut(s) | 359, 365, 377 |
| ApoI | RAATTY | 3 cut(s) | 24, 99, 306 |
| AseI | ATTAAT | 1 cut(s) | 63 |
| AspLEI | GCGC | 1 cut(s) | 144 |
| AspS9I | GGNCC | 1 cut(s) | 263 |
| AsuHPI | GGTGA | 1 cut(s) | 352 |
| AvaII | GGWCC | 1 cut(s) | 263 |
| BccI | CCATC | 1 cut(s) | 253 |
| BciT130I | CCWGG | 1 cut(s) | 237 |
| BcoDI | GTCTC | 3 cut(s) | 359, 365, 377 |
| BfrI | CTTAAG | 1 cut(s) | 316 |
| Bme1390I | CCNGG | 1 cut(s) | 237 |
| Bme18I | GGWCC | 1 cut(s) | 263 |
| BmgT120I | GGNCC | 1 cut(s) | 263 |
| BmiI | GGNNCC | 1 cut(s) | 264 |
| BmrFI | CCNGG | 1 cut(s) | 237 |
| BmrI | ACTGGG | 1 cut(s) | 82 |
| BmuI | ACTGGG | 1 cut(s) | 82 |
| BpuEI | CTTGAG | 1 cut(s) | 341 |
| BsaI | GGTCTC | 1 cut(s) | 377 |
| BsaJI | CCNNGG | 1 cut(s) | 236 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 44 |
| Bse1I | ACTGG | 1 cut(s) | 77 |
| BseBI | CCWGG | 1 cut(s) | 237 |
| BseDI | CCNNGG | 1 cut(s) | 236 |
| BseGI | GGATG | 1 cut(s) | 264 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 44 |
| BseNI | ACTGG | 1 cut(s) | 77 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 44 |
| BsmAI | GTCTC | 3 cut(s) | 359, 365, 377 |
| BsmBI | CGTCTC | 1 cut(s) | 359 |
| BsmI | GAATGC | 1 cut(s) | 127 |
| Bso31I | GGTCTC | 1 cut(s) | 377 |
| Bsp143I | GATC | 2 cut(s) | 193, 412 |
| BspHI | TCATGA | 1 cut(s) | 157 |
| BspLI | GGNNCC | 1 cut(s) | 264 |
| BspTI | CTTAAG | 1 cut(s) | 316 |
| BspTNI | GGTCTC | 1 cut(s) | 377 |
| BsrI | ACTGG | 1 cut(s) | 77 |
| BssECI | CCNNGG | 1 cut(s) | 236 |
| BssMI | GATC | 2 cut(s) | 193, 412 |
| Bst2UI | CCWGG | 1 cut(s) | 237 |
| BstAFI | CTTAAG | 1 cut(s) | 316 |
| BstDEI | CTNAG | 1 cut(s) | 224 |
| BstF5I | GGATG | 1 cut(s) | 264 |
| BstHHI | GCGC | 1 cut(s) | 144 |
| BstKTI | GATC | 2 cut(s) | 196, 415 |
| BstMAI | GTCTC | 3 cut(s) | 359, 365, 377 |
| BstMBI | GATC | 2 cut(s) | 193, 412 |
| BstNI | CCWGG | 1 cut(s) | 237 |
| BstSCI | CCNGG | 1 cut(s) | 235 |
| BtsCI | GGATG | 1 cut(s) | 264 |
| BtsIMutI | CAGTG | 1 cut(s) | 408 |
| CciI | TCATGA | 1 cut(s) | 157 |
| CfoI | GCGC | 1 cut(s) | 144 |
| Cfr13I | GGNCC | 1 cut(s) | 263 |
| CviAII | CATG | 2 cut(s) | 158, 293 |
| CviJI | RGCY | 3 cut(s) | 34, 190, 361 |
| CviKI_1 | RGCY | 3 cut(s) | 34, 190, 361 |
| DdeI | CTNAG | 1 cut(s) | 224 |
| DpnI | GATC | 2 cut(s) | 195, 414 |
| DpnII | GATC | 2 cut(s) | 193, 412 |
| DraI | TTTAAA | 1 cut(s) | 30 |
| Eco31I | GGTCTC | 1 cut(s) | 377 |
| Eco47I | GGWCC | 1 cut(s) | 263 |
| EcoO109I | RGGNCCY | 1 cut(s) | 263 |
| EcoRII | CCWGG | 1 cut(s) | 235 |
| Esp3I | CGTCTC | 1 cut(s) | 359 |
| FaeI | CATG | 2 cut(s) | 161, 296 |
| FaiI | YATR | 8 cut(s) | 53, 55, 117, 159, 211, 213, 272, 294 |
| FatI | CATG | 2 cut(s) | 157, 292 |
| FokI | GGATG | 1 cut(s) | 271 |
| GlaI | GCGC | 1 cut(s) | 143 |
| HhaI | GCGC | 1 cut(s) | 144 |
| Hin1II | CATG | 2 cut(s) | 161, 296 |
| Hin6I | GCGC | 1 cut(s) | 142 |
| HinP1I | GCGC | 1 cut(s) | 142 |
| HincII | GTYRAC | 1 cut(s) | 350 |
| HindII | GTYRAC | 1 cut(s) | 350 |
| HinfI | GANTC | 2 cut(s) | 110, 228 |
| HphI | GGTGA | 1 cut(s) | 352 |
| Hpy166II | GTNNAC | 2 cut(s) | 350, 419 |
| Hpy188I | TCNGA | 1 cut(s) | 312 |
| Hpy188III | TCNNGA | 4 cut(s) | 38, 82, 158, 219 |
| Hpy8I | GTNNAC | 2 cut(s) | 350, 419 |
| HpyCH4IV | ACGT | 2 cut(s) | 352, 397 |
| HpyF3I | CTNAG | 1 cut(s) | 224 |
| HpySE526I | ACGT | 2 cut(s) | 352, 397 |
| Hsp92II | CATG | 2 cut(s) | 161, 296 |
| HspAI | GCGC | 1 cut(s) | 142 |
| Kzo9I | GATC | 2 cut(s) | 193, 412 |
| LmnI | GCTCC | 1 cut(s) | 139 |
| LpnPI | CCDG | 5 cut(s) | 51, 58, 204, 222, 249 |
| MaeII | ACGT | 2 cut(s) | 352, 397 |
| MaeIII | GTNAC | 2 cut(s) | 274, 285 |
| MalI | GATC | 2 cut(s) | 195, 414 |
| MboI | GATC | 2 cut(s) | 193, 412 |
| MluCI | AATT | 5 cut(s) | 24, 60, 64, 99, 306 |
| MlyI | GAGTC | 2 cut(s) | 119, 222 |
| MmeI | TCCRAC | 1 cut(s) | 25 |
| MnlI | CCTC | 4 cut(s) | 45, 88, 300, 414 |
| MseI | TTAA | 3 cut(s) | 29, 63, 317 |
| MslI | CAYNNNNRTG | 1 cut(s) | 424 |
| MspCI | CTTAAG | 1 cut(s) | 316 |
| MspR9I | CCNGG | 1 cut(s) | 237 |
| Mva1269I | GAATGC | 1 cut(s) | 127 |
| MvaI | CCWGG | 1 cut(s) | 237 |
| NdeII | GATC | 2 cut(s) | 193, 412 |
| NlaIII | CATG | 2 cut(s) | 161, 296 |
| NlaIV | GGNNCC | 1 cut(s) | 264 |
| PagI | TCATGA | 1 cut(s) | 157 |
| PctI | GAATGC | 1 cut(s) | 127 |
| PflFI | GACNNNGTC | 1 cut(s) | 164 |
| PleI | GAGTC | 2 cut(s) | 118, 222 |
| PpsI | GAGTC | 2 cut(s) | 118, 222 |
| PpuMI | RGGWCCY | 1 cut(s) | 263 |
| PshBI | ATTAAT | 1 cut(s) | 63 |
| Psp5II | RGGWCCY | 1 cut(s) | 263 |
| Psp6I | CCWGG | 1 cut(s) | 235 |
| PspGI | CCWGG | 1 cut(s) | 235 |
| PspN4I | GGNNCC | 1 cut(s) | 264 |
| PspPI | GGNCC | 1 cut(s) | 263 |
| PspPPI | RGGWCCY | 1 cut(s) | 263 |
| PsyI | GACNNNGTC | 1 cut(s) | 164 |
| RseI | CAYNNNNRTG | 1 cut(s) | 424 |
| SaqAI | TTAA | 3 cut(s) | 29, 63, 317 |
| Sau3AI | GATC | 2 cut(s) | 193, 412 |
| Sau96I | GGNCC | 1 cut(s) | 263 |
| SchI | GAGTC | 2 cut(s) | 119, 222 |
| ScrFI | CCNGG | 1 cut(s) | 237 |
| SetI | ASST | 7 cut(s) | 204, 257, 285, 292, 342, 355, 400 |
| SinI | GGWCC | 1 cut(s) | 263 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 424 |
| SmlI | CTYRAG | 2 cut(s) | 316, 356 |
| SmoI | CTYRAG | 2 cut(s) | 316, 356 |
| Sse9I | AATT | 5 cut(s) | 24, 60, 64, 99, 306 |
| SspI | AATATT | 1 cut(s) | 88 |
| StyD4I | CCNGG | 1 cut(s) | 235 |
| TaiI | ACGT | 2 cut(s) | 355, 400 |
| TaqI | TCGA | 1 cut(s) | 220 |
| TasI | AATT | 5 cut(s) | 24, 60, 64, 99, 306 |
| Tru1I | TTAA | 3 cut(s) | 29, 63, 317 |
| Tru9I | TTAA | 3 cut(s) | 29, 63, 317 |
| TscAI | CASTG | 1 cut(s) | 415 |
| TspDTI | ATGAA | 3 cut(s) | 17, 36, 146 |
| TspRI | CASTG | 1 cut(s) | 415 |
| Tth111I | GACNNNGTC | 1 cut(s) | 164 |
| Vha464I | CTTAAG | 1 cut(s) | 316 |
| VpaK11BI | GGWCC | 1 cut(s) | 263 |
| VspI | ATTAAT | 1 cut(s) | 63 |
| XapI | RAATTY | 3 cut(s) | 24, 99, 306 |