Rroxscaffold_3G00239020

protein kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000013
Physical Location & Seq
Forward (+)
27812149 .. 27908249
96101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239020.1

Sequence Viewer

Length: 5577 bp
ATGTCCGGACCATCTGAGCCACCCAAGTACCCCAAGACACCCCTACACGTCATTCAAGAGCGAATTGAGAAGTTGAAAAAGAATTCTGATATCTTTGACGTCAACATCAACACTCCACTTCAAATTCGTGAGCTTCAAATAGATAGTGAAGGGAATAGAGTAGAAGGAGGTTCAGAAACTTCTGACACTTCAGTTGATCCATCACCACATCCACCACCACCAATGGCTCTCACCATCAGGCAACTTTCTACATCAGTCATCCCACCTGGTGGAGTTCCAACTTGCATAACCTACCCTGCTGCAGCTGAGGGAGCAACAGCTGATTTTGAGTTGAAGTCTGGATTGCTTCATCGTCTTCCTACCTTCCATGGACTCTCTATGGAAGATCCGAACCAACACTTGATGGAATTTCAGTTCATATGCACTAGCATGAAGCCTCAAGGAGCAGATGAGCAAATTTTGAAGTTGAAGGCCTTCCCATTTTCGTTGGCTGACAAAGCAAAGCAATGGCTCTATGAGTTGCCTAGTGGACGAATTGCATCTTGGGCAGACATGATGAAGGCGTTTCTTGAGAAGTATTTTCCTACATCTCGCATCATCATGTTAAGGAAGAAGATAAGTGGGATCCAGCAAGGGCAAGATGAGTCCTACGCTGAGTACTATGAAAGGTTCAAGTCTCTTGTCACCCAATGCCCTCAACATGGCATGAAGGATGAGACCTTGCTCACTTGCTTTTATGATGGGCTCATACCTTTGGAAAGAGACATGCTAGATGCAGCTTCTGGTGGATCATTTGTTGACAAGGAACCTGCGGCTGGAATGATTTTAATTGAGAATAGGGCCTTGAATCAACAACAATATGGAAGCTCTAGGCCCAAATCCACCACCACACGTGAAAGGGTCCATGAGGTAAGTACTTTAGCTCAATTGGAAGATAAAATTAACAAACTTACTTCTCTTGTGTCTCAGGGATCACATGGACAAGTCATGGTGTGTGGAGTTTGCTCAATGCAAGGGCATGTTTCTGATCAATGCCCTCAACTCATGGAAAGTGGAGGACTTGAAGGTGTCAACGCAATGGGGTTCCAACAAGGGTACCAACGTCCTAGGAATGATCCATTCTCAAACACCTATAATCCTGGATGGAGGGATCACCCTAACTTTCGTTGGAAGGACAATGAAAACGCTCAAAGTGCACCTCAAGGCTTCCAACAACAACGTCCTCAAGGCTTTTATCAAAAGCCTCAAGTCCCTAACCCTACTCCTTTTAATTCGAATTTCAATTCAAATTCTTCTTCTTCTTCTTCTTCTTCTTCTAATGATGAATTGATCCGAACTCTAACTAAATCTACTCAAGCTTTAATTGCAGGTCAAACTCATCATGGGAATCAAATCAATGCTATATCTACGGATGTCAATGAGATGAAGAAGCAAATGAGTCAAGTTGTGGAGTTCATGGGTAAGTTTCATGAGCAAGGAAAGCTACCAAGTGGTACCATCCCAAATCCTCACTTTGAGCAAGCCAAATTCATCACTACAAGGAGTGGTAAGACCCTTGTAGATCCTCCAAAGCCTCCTAAGAAGGTCTCAACGTCAATACTAGAGGAAGAAGAGGACCCTGCAACATCTAAGGCTCAAATGACGTCTCAACCTTCCAATGCAAAACCGAATTCTCAAGGTAATGTTTCTAACTCTTTTAATTCAGTTATTGCTAATCCATCTTCTTCTCCTTTGCCTTTCCCAAGCAGATATGCTAGATCCAAGAAGGATGAGGCCGAAAAGGCCATCTTGGAGACCTTCAAGAAAGTGCAAATCAATATCCCTCTCCTTGAGGCCATAAAGCAAATTCCTAAGTATGCCAAATTCTTAAAGGAGCTTTGCACCACAAGGAGACAAAACCGTGAAAAGGAGGTGGTGAAGGTAAGTGAGAATGTCTCAGCTGTGCTTCAGAGAAGAATGCCTGAAAAGTGTAAGGATCCAGGGAGTTTTTCTATCCCTTGTGTTATTGGAACCACTAGATTCGAAAATGCCATGCTAGACTTAGGTGCTTCTATAAATGTTATGCCATACTCTGTTTATGCATCTCTAGGTCTAGGTGAACTCAAACATGATAATGTTATTATTCAATTGGCAGATCGATCTAATGCATACCCTAAGGGGTTAGTTGAGGATGTACTTGTGCAGGTAGGAGAGCTTATTTTCCCAGCTGATTTCTACGTTCTAGAGATGGAGGAGCCATCTCCCAAGTCTACGCCATTATTGCTAGGCCGTCCCTTCATGAGGACGGCTAGGACCAAAATTGATGTGTATTCTGGCACCTTGACAATGGAATTTGATGGAGAAGTTGTTGGCTTCAATATTTTTGAAGCCATGAGGTATCCTTTAGTTGATTTTCAATCATGTTTTTCTATTGATATTCTTGATGAACTTGCGCAGAAATTCATGGAAATTATGGGGGAGGATGTCATGGTTTCAACCATTGCAAGTGGCGTTGGTTTTGAGGAAAATGGCGCCACCATACCTAAGGAAGAGCTCACGGATTTCTATAATACCATCCACCTTGAAAACGTTGCTCTTCTTGAGGCAACATCCTTTGTAGGTAAGTCATCTCCTTCTTTTTCACTCCCCATCTCTGCTAATAAACCTTTGCCTTCAGTGATTCAGGCACCTACTTTAGAGCTTAAGCAATTACCGGATCATTTGAAGTATGTATATTTGGGGGAGAAGGAGACGTTACCTGTCATCATCTCTTCATCATTGACGTTGACTCAAGAGGACAAGTTAGTGGAGATGCTCAAAAGACACAAGACTGCAATTGGATGGACTTTAGCAGATATCAAGGGAATTAGCCCTACCACTTGTGTCCATAGGATTTTGCTTGAGGAGGGAGCTAAACCAACCAGAGAGGCTCAAAGACGTTTGAACCCACCCATGATGGAAGTTGTGAAGAAAGAAGTAATCAAGCTTCTTGATTGTGGCGTCATTTACCCTATCTCAGATTCTAAGTGGGTTTCACCAGTTCAAGTTGTACCAAAGAAGTCTGGAATAACTGTTGTGAAGAATGCAGAGAATGAGTTGGTGCCTCAGAGAACTGTGACTGGACATCGAGTTTGTATTGATTATAGGAAGCTCAACGCCACTACTAGGAAGGACCACTTTCCCTTGCCATTCATTGATCAGATGCTTGAGAGGTTAGCTGGCTATGAGTTCTATTGCTTTCTCGATGGATATTCTGGTTACAACCAAATCGCCATTGCTAATGAGGATCAAGAGAAAACAACCTTCACTTGTCCTTTTGGAACGTTTGCCTACAGAAGAATGCCATTTGGACTATGCAACGCCCCAGGTACGTTTCAAAGGTGCATGGTAAGTATCTTTTCTGATTTTATTGAAAAAATTATTGAAGTTTTTATGGATGACTTTTCTGTCTTTGGTAAAGATTTCGAAAATTGCTTAAGTAACTTAGAATTGATACTTGAACGTTGTGAAGAAACTAACCTTGTTTTAAATTGGGAAAAATGTCACTTTATGGTTAAACAAGGCATAGTTTTAGGGCATATTGTTTCTAAACGTGGAATTGAAGTAGATAAAGCTAAAGTAGATCTTGTTAGATACTTACCATACCCCACAAGTGTGAGGGAGGTTCGTTCTTTTCTTGGACACGCAGGTTTCTACAGGCGCTTTATCAAGGACTTTTCCAAGATTTCTAGGCCCCTATGTCGTCTTCTCCAAAAGGATGTGGCGTTTGAGTTCAATGAGGATTGCAAGAAGGCATTCAACACTTTGAAGGAGCTTCTAACGTCTGCACCAATTATGCTTCCACCAGATTGGTCTCTTCCCTTTGAGATCATGTGTGACGCTTCAGATTATGCAGTTGGGGCCGTGCTAGGTCAAAGGAAGGACAAGAAGCCCTATGCCATCTACTACGCATCAAGAACCCTCAATGATGCTCAACTCAATTACTCTACAACTGAAAAAGAACTTTTAGCTGTTGTTTTTGCCTTAGAAAAATTTAGATCTTATTTATTGGGTACTAAAGTTATTGTTTATTCTGATCATGCAGCTTTAAGGTACCTAATGTCAAAGAAGGAGGCCAAACCTAGGCTAATTCGTTGGATACTCTTGCTTCAAGAGTTTGATGTGGAGATCAAGGATAAGAAGGGTTCAGAGAACGTTGTGGCTGACCATTTGAGTAGACTAGTGAGTGAGGAGGACGCCATACCCTTGGTGGAGATGTTTCCGGATGAACAACTCTTCGGAATCCAGGTAAGTGAGCCTTGGTATGCAGATATTGTTAATTATTTGGTATCTAAAACGTTCCCTAGTGATATGTTGCATGCTCAACGTGAAAGACTTAAGACTTTAGCTAGGCAATATGTTTGGGATGATCCTTATTTGTGGAAATATGGTTCTGATAAATTGATAAGGAGATGTGTGCCTGATAATGAACAAAAAGCTATACTTGAGTTTTGTCATGCTAGGCAATGTGGTGGTCACTTTGGCTCTGAAAGAACTGCTAGGAAAGTGTTGGAATCTGGTTTTTATTGGCCTACTTTGTTTAAGGATGCATATGAATTTTGTATGACATGTGATAGATGCCAAAGAACCGGTAATTTAGGACCTAAAGATCAAATGCCTTTGAATTCTATTGTGGTTGTCGAAATTTTTGATATTTGGGGCATTGATTTTATGGGACCCTTTCCTTCATCTAATGGTTTTCTTTATATTCTCTTGGCTGTTGATTATGTTTCTAAGTGGGTGGAAGCGAAAGCCACCAGGACTAATGATTCTAAGGTTGTTGCAGAGTTTATAAAGTCTAACATTTTTAGTAGGTTTGGCATGCCTAGAGCAATCATTAGTGATGGAGGTTCTCACTTCTGCAACAAGACCATTGAAGCTTTGCTTAGGAAGTATCATGTGACACATAAGGTTTCTACACCTTATCATCCTCAAACGAGTGGACAGGCAGAAGTTTCAAATAGGGAGATCAAGAGGATACTTGAGAAAACTGTAGGACCTTCAAGAAAGGATTGGAGCCAACGTTTGGAGGATGCATTGTGGGCATATAGGACGGCTTTCAAGACGCCAATTGGGATGTCTCCATTTCGTTTGGTGTATGGGAAGGCGTGCCACTTACCTGTGGAATTGGAACATAGAGCTTGGTGGGCAGTTAAGACGTTCAACATGGACTTGGATGAAGCTGGACTTCATAGGAAGTTGCAACTTAATGAGCTTGAGGAGATTCGAAATGAGGCCTATGATAGTGCACGGATTTACAAGGAAAAGACAAAGGCTTTTCATGATAAGATGATTCGCGGAAAGACCTTTGTAGTTGGTCAAAAAGTTCTTCTATTTCATTCTAGATTAAGACTTTTTCCTGGTAAGTTGCGTTCTAGATGGGTTGGTCCTTTTATTGTTACTAAAGTTTTTCCTCATGGTGCTATACAGATAAAGAGTCAAGCAACTGGCGCAGAATTTAAGGTGAATGGACATCGTCTTAAGCCTTACTATGAGGCGTTTGTGGAGCACAATGTGGAGGATGTACCCCTCCAAGAGGCGCCACAACCAGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

1858

Amino Acids

210.25

Weight (kDa)

7.36

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 158 - 249 4.2e-22 Retrotransposon gag protein
RVT_1 PF00078 1032 - 1187 2.7e-28 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 1251 - 1349 3.8e-34 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 1276 - 1379 1.9e-37 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 1479 - 1536 1.2e-12 Integrase zinc binding domain
rve PF00665 1557 - 1650 1.2e-15 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000013)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00750
fragaria_vesca FvH4_1g09710 FvH4_1g27931 FvH4_1g27951 FvH4_1g27952 FvH4_1g27956 FvH4_1g28083 FvH4_1g28442 FvH4_1g28532 FvH4_1g29491 FvH4_1g29492 FvH4_1g29493 FvH4_1g29494 FvH4_1g29682 FvH4_1g29685 FvH4_1g29771 FvH4_2g08113 FvH4_2g08114 FvH4_2g14571 FvH4_2g22452 FvH4_2g35543 FvH4_3g01281 FvH4_3g19211 FvH4_3g19212 FvH4_3g19232 FvH4_3g21342 FvH4_3g21381 FvH4_3g22811 FvH4_3g26051 FvH4_3g26316 FvH4_3g26555 FvH4_3g31201 FvH4_3g31892 FvH4_3g32071 FvH4_3g36983 FvH4_3g40761 FvH4_3g44964 FvH4_3g44965 FvH4_4g02082 FvH4_4g03221 FvH4_4g05351 FvH4_4g05352 FvH4_4g08761 FvH4_4g08973 FvH4_4g09161 FvH4_4g09241 FvH4_4g09322 FvH4_4g10092 FvH4_4g10251 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14302 FvH4_4g14401 FvH4_4g14402 FvH4_4g14403 FvH4_4g14569 FvH4_4g15806 FvH4_4g15807 FvH4_4g15808 FvH4_4g16144 FvH4_4g16145 FvH4_4g16146 FvH4_4g17204 FvH4_4g17205 FvH4_4g17206 FvH4_4g17207 FvH4_4g17692 FvH4_4g24603 FvH4_5g22912 FvH4_5g34661 FvH4_6g00252 FvH4_6g00253 FvH4_6g18062 FvH4_6g22851 FvH4_6g22852 FvH4_6g32641 FvH4_6g36491 FvH4_6g36492 FvH4_6g37921 FvH4_6g48511 FvH4_7g01732 FvH4_7g01733 FvH4_7g03471 FvH4_7g04071 FvH4_7g04231 FvH4_7g12351 FvH4_7g14381 FvH4_7g20371 FvH4_7g20372 FvH4_7g22571 FvH4_7g25271 FvH4_7g25272 FvH4_7g25273
malus_domestica MD00G1099500.v1.1 MD00G1134900.v1.1 MD00G1199900.v1.1 MD02G1203700.v1.1 MD02G1206700.v1.1 MD07G1097600.v1.1 MD08G1099400.v1.1 MD08G1149900.v1.1 MD08G1150000.v1.1 MD08G1150100.v1.1 MD10G1200800.v1.1 MD15G1306700.v1.1 MD15G1306800.v1.1 MD15G1321900.v1.1 MD16G1251200.v1.1 MD17G1170700.v1.1 MD17G1170900.v1.1
pyrus_communis pycom01g00440 pycom01g00890 pycom01g01140 pycom01g01590 pycom01g01620 pycom01g01640 pycom01g01740 pycom01g02310 pycom01g02760 pycom01g03670 pycom01g04180 pycom01g04200 pycom02g18120 pycom02g18300 pycom02g22040 pycom03g09950 pycom03g10150 pycom03g11910 pycom03g11940 pycom03g18650 pycom04g06630 pycom04g06990 pycom04g07610 pycom04g07750 pycom04g08190 pycom04g09650 pycom04g10380 pycom04g12350 pycom04g12360 pycom05g01490 pycom05g03640 pycom05g06240 pycom05g06610 pycom05g08950 pycom06g05580 pycom06g06900 pycom06g07080 pycom07g10140 pycom07g10970 pycom07g13410 pycom07g15510 pycom07g15520 pycom08g13910 pycom09g12650 pycom09g13010 pycom09g13630 pycom09g13780 pycom09g13860 pycom09g14280 pycom10g07230 pycom1125g00040 pycom1153g00020 pycom11g09720 pycom11g09730 pycom11g09740 pycom11g16740 pycom11g17060 pycom11g20170 pycom1217g00060 pycom12382g00040 pycom12405g00030 pycom12406g00010 pycom12406g00020 pycom12419g00290 pycom12420g00030 pycom12420g00060 pycom12420g00070 pycom12420g00080 pycom12420g00110 pycom12423g00120 pycom12424g00040 pycom12424g00050 pycom12426g00020 pycom12426g00150 pycom12426g00160 pycom12426g00320 pycom12426g00650 pycom12426g00730 pycom12429g00030 pycom12439g00060 pycom12463g00030 pycom12468g00010 pycom12526g00030 pycom12526g00050 pycom12534g00010 pycom12556g00050 pycom12561g00280 pycom12568g00070 pycom12569g00010 pycom1256g00080 pycom1256g00120 pycom1256g00270 pycom1256g00280 pycom12575g00020 pycom12575g00060 pycom12577g00010 pycom12578g00010 pycom12589g00010 pycom12594g00010 pycom12596g00020 pycom12613g00040 pycom12613g00050 pycom12621g00020 pycom12630g00030 pycom12630g00090 pycom12633g00030 pycom12658g00080 pycom12659g00130 pycom12659g00240 pycom12661g00180 pycom12674g00010 pycom12675g00080 pycom12698g00020 pycom12g05860 pycom12g09040 pycom12g09680 pycom12g11990 pycom12g12930 pycom12g12940 pycom12g14090 pycom13g09490 pycom13g17080 pycom13g21650 pycom13g21860 pycom13g22080 pycom13g22290 pycom13g22300 pycom13g23220 pycom13g24040 pycom13g24190 pycom13g24790 pycom13g25360 pycom13g25680 pycom13g25770 pycom13g25780 pycom13g25910 pycom13g26110 pycom13g26270 pycom13g26380 pycom13g26390 pycom13g26480 pycom13g26920 pycom13g27220 pycom13g28550 pycom13g29330 pycom14g07990 pycom14g08020 pycom14g08690 pycom14g08860 pycom14g10000 pycom1534g00030 pycom15g21840 pycom15g29900 pycom15g31990 pycom15g34410 pycom1604g00100 pycom1667g00020 pycom16g19300 pycom16g21890 pycom16g21940 pycom1729g00050 pycom1729g00170 pycom1735g00030 pycom1735g00060 pycom1735g00080 pycom17g11600 pycom17g11920 pycom17g12980 pycom17g15280 pycom17g16060 pycom17g16510 pycom17g17570 pycom17g17580 pycom17g17590 pycom17g17710 pycom17g17720 pycom17g17940 pycom17g18100 pycom17g18550 pycom17g18810 pycom1844g00050 pycom1844g00060 pycom1845g00030 pycom1845g00090 pycom1866g00040 pycom1867g00030 pycom1880g00080 pycom1903g00030 pycom1903g00050 pycom1903g00080 pycom2002g00080 pycom2177g00050 pycom2205g00030 pycom2217g00050 pycom2229g00020 pycom243g00100 pycom2596g00020 pycom2751g00010 pycom2821g00080 pycom2933g00010 pycom2989g00010 pycom323g00010 pycom420g00370 pycom420g00380 pycom420g00830 pycom436g00020 pycom436g00090 pycom436g00250 pycom436g00320 pycom505g00020 pycom505g00060 pycom505g00070 pycom510g00040 pycom5153684g00020 pycom5153684g00460 pycom531g00010 pycom531g00020 pycom556g00100 pycom608g00070 pycom808g00020 pycom808g00390 pycom808g00430 pycom808g00440 pycom808g00660 pycom808g00690 pycom889g00020 pycom889g00070 pycom920g00010 pycom992g00020 pycom992g00030
rosa_chinensis RchiOBHm_Chr0c01g0497691 RchiOBHm_Chr0c36g0502941 RchiOBHm_Chr1g0320831 RchiOBHm_Chr1g0320841 RchiOBHm_Chr1g0344611 RchiOBHm_Chr1g0358301 RchiOBHm_Chr1g0381281 RchiOBHm_Chr1g0381291 RchiOBHm_Chr2g0117701 RchiOBHm_Chr2g0130161 RchiOBHm_Chr2g0130421 RchiOBHm_Chr2g0132971 RchiOBHm_Chr2g0133871 RchiOBHm_Chr2g0154881 RchiOBHm_Chr2g0154911 RchiOBHm_Chr3g0450421 RchiOBHm_Chr3g0452811 RchiOBHm_Chr3g0469711 RchiOBHm_Chr3g0493781 RchiOBHm_Chr3g0495801 RchiOBHm_Chr4g0404441 RchiOBHm_Chr4g0405891 RchiOBHm_Chr4g0410431 RchiOBHm_Chr4g0415841 RchiOBHm_Chr4g0418061 RchiOBHm_Chr5g0043631 RchiOBHm_Chr6g0272771 RchiOBHm_Chr7g0180211 RchiOBHm_Chr7g0193951
rosa_multiflora Rmu_co8039452.1_g000001 Rmu_co8083434.1_g000001 Rmu_co8112738.1_g000001 Rmu_co8202386.1_g000001 Rmu_co8313305.1_g000001 Rmu_sc0000007.1_g000025 Rmu_sc0000083.1_g000007 Rmu_sc0000322.1_g000029 Rmu_sc0000516.1_g000040 Rmu_sc0000621.1_g000033 Rmu_sc0000914.1_g000005 Rmu_sc0001136.1_g000005 Rmu_sc0001306.1_g000046 Rmu_sc0001438.1_g000017 Rmu_sc0001438.1_g000018 Rmu_sc0001504.1_g000001 Rmu_sc0001675.1_g000001 Rmu_sc0001678.1_g000001 Rmu_sc0002082.1_g000080 Rmu_sc0002206.1_g000035 Rmu_sc0002457.1_g000001 Rmu_sc0003002.1_g000012 Rmu_sc0003232.1_g000021 Rmu_sc0003376.1_g000002 Rmu_sc0003432.1_g000001 Rmu_sc0003574.1_g000002 Rmu_sc0003753.1_g000023 Rmu_sc0004239.1_g000003 Rmu_sc0004866.1_g000020 Rmu_sc0004904.1_g000009 Rmu_sc0005470.1_g000003 Rmu_sc0005835.1_g000005 Rmu_sc0005925.1_g000002 Rmu_sc0006358.1_g000001 Rmu_sc0006366.1_g000022 Rmu_sc0006401.1_g000001 Rmu_sc0006489.1_g000001 Rmu_sc0006652.1_g000001 Rmu_sc0007038.1_g000014 Rmu_sc0007067.1_g000001 Rmu_sc0007480.1_g000005 Rmu_sc0008412.1_g000001 Rmu_sc0008719.1_g000001 Rmu_sc0009019.1_g000001 Rmu_sc0009438.1_g000008 Rmu_sc0009785.1_g000015 Rmu_sc0010170.1_g000002 Rmu_sc0012567.1_g000001 Rmu_sc0014039.1_g000002 Rmu_sc0014727.1_g000003 Rmu_sc0016222.1_g000001 Rmu_sc0017735.1_g000001 Rmu_sc0017868.1_g000001 Rmu_sc0017956.1_g000001 Rmu_sc0018810.1_g000001 Rmu_sc0019109.1_g000001 Rmu_sc0020243.1_g000001 Rmu_sc0020660.1_g000001 Rmu_sc0022433.1_g000001 Rmu_sc0022595.1_g000001 Rmu_sc0023258.1_g000001 Rmu_sc0024488.1_g000001 Rmu_sc0025858.1_g000001 Rmu_sc0026481.1_g000003 Rmu_sc0028000.1_g000001 Rmu_sc0031652.1_g000001 Rmu_sc0032644.1_g000001 Rmu_sc0033297.1_g000001 Rmu_sc0040410.1_g000001 Rmu_sc0042790.1_g000002 Rmu_ssc0000011.1_g000053 Rmu_ssc0000089.1_g000019 Rmu_ssc0000350.1_g000017
rosa_roxburghii Rroxscaffold_10G00433140 Rroxscaffold_1G00030920 Rroxscaffold_1G00030960 Rroxscaffold_1G00031010 Rroxscaffold_2G00085620 Rroxscaffold_2G00117570 Rroxscaffold_2G00117640 Rroxscaffold_3G00239020 Rroxscaffold_3G00245490 Rroxscaffold_4G00318740 Rroxscaffold_5G00333750 Rroxscaffold_5G00351140 Rroxscaffold_5G00351170 Rroxscaffold_6G00391220 Rroxscaffold_6G00391230 Rroxscaffold_7G00194870 Rroxscaffold_7G00196310 Rroxscaffold_7G00203910 Rroxscaffold_8G00436890 Rroxscaffold_9G00437900
rosa_rugosa Rorug04G0034000 Rorug04G0049300
rosa_samantha Rh2BG324800 Rh3CG286600 Rh4AG154200 Rh4BG060200 Rh5AG465000
rosa_wichuraiana Rw0G001700 Rw0G002220 Rw0G002610 Rw0G003900 Rw0G005180 Rw0G005190 Rw0G005330 Rw0G010320 Rw0G010460 Rw0G011800 Rw0G012250 Rw0G012750 Rw0G012760 Rw0G012770 Rw0G015330 Rw0G018210 Rw0G020550 Rw0G020700 Rw0G020810 Rw0G021790 Rw0G022660 Rw0G022910 Rw1G008700 Rw1G008870 Rw1G009360 Rw1G009610 Rw1G009750 Rw1G009760 Rw1G009910 Rw1G010630 Rw1G010650 Rw2G022280 Rw2G023370 Rw2G023960 Rw2G025190 Rw2G025550 Rw2G025590 Rw2G025620 Rw2G025720 Rw2G025730 Rw2G025790 Rw2G025810 Rw2G025880 Rw2G026750 Rw2G033860 Rw2G037040 Rw3G025490 Rw3G026360 Rw3G027500 Rw3G027510 Rw3G027820 Rw3G028390 Rw3G028500 Rw3G028640 Rw3G029070 Rw3G029140 Rw3G029220 Rw3G029610 Rw4G002830 Rw4G009210 Rw4G009560 Rw4G010400 Rw4G010860 Rw4G011150 Rw4G011260 Rw4G011700 Rw4G012670 Rw4G018460 Rw4G020770 Rw5G029790 Rw5G029800 Rw5G030040 Rw5G030860 Rw5G030940 Rw5G030950 Rw5G030970 Rw5G031090 Rw5G031230 Rw5G031240 Rw5G031290 Rw5G031330 Rw5G031340 Rw5G031350 Rw5G031360 Rw5G031420 Rw5G031430 Rw5G031470 Rw5G031530 Rw5G045200 Rw5G049340 Rw5G049830 Rw6G001320 Rw6G003070 Rw6G007640 Rw6G011560 Rw6G012460 Rw6G014020 Rw6G014530 Rw6G014590 Rw6G015150 Rw6G015160 Rw6G015200 Rw6G015210 Rw6G015220 Rw6G015270 Rw6G015280 Rw6G015310 Rw6G015330 Rw6G015400 Rw6G016140 Rw6G016410 Rw6G016860 Rw6G028980 Rw6G035110 Rw7G023030 Rw7G024040 Rw7G025740 Rw7G028390 Rw7G028530 Rw7G028600 Rw7G028610 Rw7G028620 Rw7G028630 Rw7G028640 Rw7G028920 Rw7G031450 Rw7G034150 Rw7G038570 Rw7G041520 Rw7G042470

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4811
AasI GACNNNNNNGTC 1 cut(s) 3425
AatII GACGTC 2 cut(s) 102, 1646
Acc16I TGCGCA 1 cut(s) 2433
Acc36I ACCTGC 4 cut(s) 817, 1358, 2173, 3656
Acc65I GGTACC 3 cut(s) 1095, 1493, 4071
AccB1I GGYRCC 8 cut(s) 1095, 1493, 2315, 2510, 2665, 3079, 4071, 5557
AccB7I CCANNNNNTGG 2 cut(s) 269, 5044
AccI GTMKAC 2 cut(s) 2249, 4195
AccII CGCG 1 cut(s) 5316
AccIII TCCGGA 2 cut(s) 5, 4240
AciI CCGC 2 cut(s) 812, 5316
AclI AACGTT 6 cut(s) 2568, 3302, 3481, 4173, 4316, 5041
AcuI CTGAAG 4 cut(s) 174, 1931, 2637, 3846
AcvI CACGTG 1 cut(s) 893
AcyI GRCGYC 7 cut(s) 99, 1643, 2511, 2979, 4215, 5084, 5558
AdeI CACNNNGTG 2 cut(s) 269, 5533
AfiI CCNNNNNNNGG 9 cut(s) 269, 701, 815, 1906, 2280, 3144, 4101, 5044, 5554
AflII CTTAAG 4 cut(s) 2681, 3454, 4355, 5498
AflIII ACRYGT 3 cut(s) 46, 890, 4586
AgeI ACCGGT 1 cut(s) 4607
AhlI ACTAGT 1 cut(s) 4198
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 7 cut(s) 265, 1138, 1978, 3343, 4263, 4775, 5377
AjuI GAANNNNNNNTTGG 2 cut(s) 526, 558
AleI CACNNNNGTG 1 cut(s) 3632
AloI GAACNNNNNNTCC 4 cut(s) 398, 430, 4393, 4425
Alw21I GWGCWC 4 cut(s) 1198, 2535, 5269, 5529
Alw44I GTGCAC 2 cut(s) 1194, 5265
AlwNI CAGNNNCTG 1 cut(s) 782
Aor13HI TCCGGA 2 cut(s) 5, 4240
ApaLI GTGCAC 2 cut(s) 1194, 5265
ApeKI GCWGC 4 cut(s) 299, 302, 776, 4061
ArsI GACNNNNNNTTYG 2 cut(s) 3093, 3125
AsiGI ACCGGT 1 cut(s) 4607
Asp700I GAANNNNTTC 2 cut(s) 473, 3773
Asp718I GGTACC 3 cut(s) 1095, 1493, 4071
AspA2I CCTAGG 2 cut(s) 1106, 4100
AspLEI GCGC 5 cut(s) 2434, 2513, 3681, 5471, 5560
AsuHPI GGTGA 8 cut(s) 195, 223, 676, 1145, 1927, 2108, 3006, 5494
AsuII TTCGAA 4 cut(s) 1274, 2022, 3444, 5245
AvaII GGWCC 9 cut(s) 8, 901, 1615, 2292, 3151, 4619, 4694, 5015, 5405
AvrII CCTAGG 2 cut(s) 1106, 4100
AxyI CCTNAGG 2 cut(s) 2154, 2523
BaeGI GKGCMC 2 cut(s) 1198, 5269
BaeI ACNNNNGTAYC 8 cut(s) 11, 44, 1079, 1087, 1112, 1120, 4023, 4056
BamHI GGATCC 2 cut(s) 624, 1975
BanI GGYRCC 8 cut(s) 1095, 1493, 2315, 2510, 2665, 3079, 4071, 5557
BanII GRGCYC 2 cut(s) 747, 2535
BarI GAAGNNNNNNTAC 2 cut(s) 2949, 2981
BbrPI CACGTG 1 cut(s) 893
BbsI GAAGAC 2 cut(s) 347, 3716
Bbv12I GWGCWC 4 cut(s) 1198, 2535, 5269, 5529
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 4 cut(s) 286, 314, 788, 4073
BceAI ACGGC 4 cut(s) 2253, 2301, 3866, 5088
BciT130I CCWGG 7 cut(s) 267, 1140, 1980, 3345, 4265, 4777, 5379
BciVI GTATCC 3 cut(s) 2388, 4110, 4989
BclI TGATCA 3 cut(s) 1027, 3175, 4054
BcuI ACTAGT 1 cut(s) 4198
BfmI CTRYAG 4 cut(s) 300, 3310, 3673, 5010
BfoI RGCGCY 3 cut(s) 2514, 3682, 5561
BfrI CTTAAG 4 cut(s) 2681, 3454, 4355, 5498
BfuAI ACCTGC 4 cut(s) 817, 1358, 2173, 3656
BfuI GTATCC 3 cut(s) 2388, 4110, 4989
BglI GCCNNNNNGGC 1 cut(s) 1781
BglII AGATCT 2 cut(s) 3601, 4016
BisI GCNGC 5 cut(s) 300, 303, 777, 813, 4062
BlnI CCTAGG 2 cut(s) 1106, 4100
BlsI GCNGC 5 cut(s) 301, 304, 778, 814, 4063
BmcAI AGTACT 2 cut(s) 659, 916
Bme1390I CCNGG 7 cut(s) 267, 1140, 1980, 3345, 4265, 4777, 5379
Bme18I GGWCC 9 cut(s) 8, 901, 1615, 2292, 3151, 4619, 4694, 5015, 5405
BmgBI CACGTC 1 cut(s) 49
BmrFI CCNGG 7 cut(s) 267, 1140, 1980, 3345, 4265, 4777, 5379
BpiI GAAGAC 2 cut(s) 347, 3716
BplI GAGNNNNNCTC 2 cut(s) 1919, 1951
Bpu10I CCTNAGC 2 cut(s) 306, 4904
Bpu14I TTCGAA 4 cut(s) 1274, 2022, 3444, 5245
Bsa29I ATCGAT 1 cut(s) 2137
BsaAI YACGTR 1 cut(s) 893
BsaHI GRCGYC 7 cut(s) 99, 1643, 2511, 2979, 4215, 5084, 5558
BsaI GGTCTC 4 cut(s) 710, 1591, 1787, 3837
BsaJI CCNNGG 7 cut(s) 367, 1106, 1979, 3343, 4100, 4224, 4277
BsaWI WCCGGW 4 cut(s) 5, 2692, 4240, 4607
BsaXI ACNNNNNCTCC 4 cut(s) 2331, 2361, 5026, 5056
Bsc4I CCNNNNNNNGG 9 cut(s) 269, 701, 815, 1906, 2280, 3144, 4101, 5044, 5554
Bse118I RCCGGY 1 cut(s) 4607
Bse1I ACTGG 3 cut(s) 3017, 3103, 5470
Bse21I CCTNAGG 2 cut(s) 2154, 2523
Bse3DI GCAATG 5 cut(s) 512, 1083, 2478, 3252, 4490
BseAI TCCGGA 2 cut(s) 5, 4240
BseBI CCWGG 7 cut(s) 267, 1140, 1980, 3345, 4265, 4777, 5379
BseCI ATCGAT 1 cut(s) 2137
BseDI CCNNGG 7 cut(s) 367, 1106, 1979, 3343, 4100, 4224, 4277
BseLI CCNNNNNNNGG 9 cut(s) 269, 701, 815, 1906, 2280, 3144, 4101, 5044, 5554
BseMI GCAATG 5 cut(s) 512, 1083, 2478, 3252, 4490
BseMII CTCAG 7 cut(s) 6, 297, 645, 980, 1950, 3009, 3098
BseNI ACTGG 3 cut(s) 3017, 3103, 5470
BseRI GAGGAG 4 cut(s) 2246, 2897, 4223, 5252
BseSI GKGCMC 2 cut(s) 1198, 5269
BseXI GCAGC 4 cut(s) 286, 314, 788, 4073
BseYI CCCAGC 1 cut(s) 2203
BsgI GTGCAG 2 cut(s) 2201, 3789
Bsh1236I CGCG 1 cut(s) 5316
BshNI GGYRCC 8 cut(s) 1095, 1493, 2315, 2510, 2665, 3079, 4071, 5557
BshTI ACCGGT 1 cut(s) 4607
BshVI ATCGAT 1 cut(s) 2137
BsiHKAI GWGCWC 4 cut(s) 1198, 2535, 5269, 5529
BsiSI CCGG 4 cut(s) 6, 2693, 4241, 4608
BslFI GGGAC 3 cut(s) 1235, 2256, 4707
BslI CCNNNNNNNGG 9 cut(s) 269, 701, 815, 1906, 2280, 3144, 4101, 5044, 5554
BsmBI CGTCTC 2 cut(s) 1650, 2723
BsmFI GGGAC 3 cut(s) 1235, 2256, 4707
BsmI GAATGC 4 cut(s) 1962, 3067, 3324, 3773
Bso31I GGTCTC 4 cut(s) 710, 1591, 1787, 3837
Bsp119I TTCGAA 4 cut(s) 1274, 2022, 3444, 5245
Bsp1286I GDGCHC 5 cut(s) 747, 1198, 2535, 5269, 5529
Bsp13I TCCGGA 2 cut(s) 5, 4240
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 2 cut(s) 812, 5316
BspCNI CTCAG 7 cut(s) 7, 298, 646, 979, 1949, 3008, 3097
BspDI ATCGAT 1 cut(s) 2137
BspEI TCCGGA 2 cut(s) 5, 4240
BspFNI CGCG 1 cut(s) 5316
BspHI TCATGA 3 cut(s) 1468, 2277, 5299
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 4 cut(s) 817, 1358, 2173, 3656
BspQI GCTCTTC 2 cut(s) 2523, 2580
BspT104I TTCGAA 4 cut(s) 1274, 2022, 3444, 5245
BspT107I GGYRCC 8 cut(s) 1095, 1493, 2315, 2510, 2665, 3079, 4071, 5557
BspTI CTTAAG 4 cut(s) 2681, 3454, 4355, 5498
BspTNI GGTCTC 4 cut(s) 710, 1591, 1787, 3837
BsrDI GCAATG 5 cut(s) 512, 1083, 2478, 3252, 4490
BsrFI RCCGGY 1 cut(s) 4607
BsrI ACTGG 3 cut(s) 3017, 3103, 5470
BssAI RCCGGY 1 cut(s) 4607
BssECI CCNNGG 7 cut(s) 367, 1106, 1979, 3343, 4100, 4224, 4277
BssNI GRCGYC 7 cut(s) 99, 1643, 2511, 2979, 4215, 5084, 5558
BssT1I CCWWGG 5 cut(s) 367, 1106, 4100, 4224, 4277
Bst2UI CCWGG 7 cut(s) 267, 1140, 1980, 3345, 4265, 4777, 5379
Bst4CI ACNGT 4 cut(s) 1901, 3052, 3094, 5011
Bst6I CTCTTC 6 cut(s) 1605, 2523, 2580, 2755, 3840, 4259
BstACI GRCGYC 7 cut(s) 99, 1643, 2511, 2979, 4215, 5084, 5558
BstAFI CTTAAG 4 cut(s) 2681, 3454, 4355, 5498
BstBAI YACGTR 1 cut(s) 893
BstBI TTCGAA 4 cut(s) 1274, 2022, 3444, 5245
BstC8I GCNNGC 5 cut(s) 1521, 3199, 4338, 4841, 5128
BstDSI CCRYGG 1 cut(s) 367
BstENI CCTNNNNNAGG 2 cut(s) 2278, 5552
BstFNI CGCG 1 cut(s) 5316
BstH2I RGCGCY 3 cut(s) 2514, 3682, 5561
BstHHI GCGC 5 cut(s) 2434, 2513, 3681, 5471, 5560
BstNI CCWGG 7 cut(s) 267, 1140, 1980, 3345, 4265, 4777, 5379
BstNSI RCATGY 5 cut(s) 769, 1022, 4340, 4590, 4843
BstSCI CCNGG 7 cut(s) 265, 1138, 1978, 3343, 4263, 4775, 5377
BstSFI CTRYAG 4 cut(s) 300, 3310, 3673, 5010
BstSLI GKGCMC 2 cut(s) 1198, 5269
BstUI CGCG 1 cut(s) 5316
BstV1I GCAGC 4 cut(s) 286, 314, 788, 4073
BstV2I GAAGAC 2 cut(s) 347, 3716
BstX2I RGATCY 7 cut(s) 385, 624, 1561, 1757, 1975, 3601, 4016
BstXI CCANNNNNNTGG 2 cut(s) 3828, 4225
BstYI RGATCY 7 cut(s) 385, 624, 1561, 1757, 1975, 3601, 4016
Bsu15I ATCGAT 1 cut(s) 2137
Bsu36I CCTNAGG 2 cut(s) 2154, 2523
BsuI GTATCC 3 cut(s) 2388, 4110, 4989
BsuTUI ATCGAT 1 cut(s) 2137
BtgI CCRYGG 1 cut(s) 367
BtrI CACGTC 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 2661
BveI ACCTGC 4 cut(s) 817, 1358, 2173, 3656
Cac8I GCNNGC 5 cut(s) 1521, 3199, 4338, 4841, 5128
CaiI CAGNNNCTG 1 cut(s) 782
CciI TCATGA 3 cut(s) 1468, 2277, 5299
CfoI GCGC 5 cut(s) 2434, 2513, 3681, 5471, 5560
Cfr10I RCCGGY 1 cut(s) 4607
ClaI ATCGAT 1 cut(s) 2137
CseI GACGC 4 cut(s) 2968, 3866, 4223, 5092
CsiI ACCWGGT 1 cut(s) 265
CspAI ACCGGT 1 cut(s) 4607
DinI GGCGCC 2 cut(s) 2512, 5559
DraI TTTAAA 1 cut(s) 3507
DraIII CACNNNGTG 2 cut(s) 269, 5533
DrdI GACNNNNNNGTC 1 cut(s) 3425
DseDI GACNNNNNNGTC 1 cut(s) 3425
Eam1104I CTCTTC 6 cut(s) 1605, 2523, 2580, 2755, 3840, 4259
EarI CTCTTC 6 cut(s) 1605, 2523, 2580, 2755, 3840, 4259
Ecl136II GAGCTC 1 cut(s) 2533
Eco130I CCWWGG 5 cut(s) 367, 1106, 4100, 4224, 4277
Eco147I AGGCCT 2 cut(s) 473, 5255
Eco24I GRGCYC 2 cut(s) 747, 2535
Eco31I GGTCTC 4 cut(s) 710, 1591, 1787, 3837
Eco32I GATATC 2 cut(s) 91, 2836
Eco47I GGWCC 9 cut(s) 8, 901, 1615, 2292, 3151, 4619, 4694, 5015, 5405
Eco53kI GAGCTC 1 cut(s) 2533
Eco57I CTGAAG 4 cut(s) 174, 1931, 2637, 3846
Eco72I CACGTG 1 cut(s) 893
Eco81I CCTNAGG 2 cut(s) 2154, 2523
EcoICRI GAGCTC 1 cut(s) 2533
EcoNI CCTNNNNNAGG 2 cut(s) 2278, 5552
EcoO109I RGGNCCY 6 cut(s) 840, 1615, 3711, 4619, 4694, 5015
EcoRI GAATTC 3 cut(s) 82, 1669, 4642
EcoRII CCWGG 7 cut(s) 265, 1138, 1978, 3343, 4263, 4775, 5377
EcoRV GATATC 2 cut(s) 91, 2836
EcoT14I CCWWGG 5 cut(s) 367, 1106, 4100, 4224, 4277
EcoT22I ATGCAT 4 cut(s) 2083, 2149, 4570, 5056
EcoT38I GRGCYC 2 cut(s) 747, 2535
EgeI GGCGCC 2 cut(s) 2512, 5559
EheI GGCGCC 2 cut(s) 2512, 5559
ErhI CCWWGG 5 cut(s) 367, 1106, 4100, 4224, 4277
Esp3I CGTCTC 2 cut(s) 1650, 2723
FaqI GGGAC 3 cut(s) 1235, 2256, 4707
FauNDI CATATG 2 cut(s) 419, 4570
FbaI TGATCA 3 cut(s) 1027, 3175, 4054
FblI GTMKAC 2 cut(s) 2249, 4195
Fnu4HI GCNGC 5 cut(s) 300, 303, 777, 813, 4062
FriOI GRGCYC 2 cut(s) 747, 2535
Fsp4HI GCNGC 5 cut(s) 300, 303, 777, 813, 4062
FspI TGCGCA 1 cut(s) 2433
GlaI GCGC 5 cut(s) 2433, 2512, 3680, 5470, 5559
GluI GCNGC 5 cut(s) 300, 303, 777, 813, 4062
GsaI CCCAGC 1 cut(s) 2207
HaeII RGCGCY 3 cut(s) 2514, 3682, 5561
HapII CCGG 4 cut(s) 6, 2693, 4241, 4608
HgaI GACGC 4 cut(s) 2968, 3866, 4223, 5092
HhaI GCGC 5 cut(s) 2434, 2513, 3681, 5471, 5560
Hin1I GRCGYC 7 cut(s) 99, 1643, 2511, 2979, 4215, 5084, 5558
Hin6I GCGC 5 cut(s) 2432, 2511, 3679, 5469, 5558
HinP1I GCGC 5 cut(s) 2432, 2511, 3679, 5469, 5558
HincII GTYRAC 4 cut(s) 103, 799, 1072, 2766
HindII GTYRAC 4 cut(s) 103, 799, 1072, 2766
HindIII AAGCTT 3 cut(s) 1356, 2963, 4896
HpaII CCGG 4 cut(s) 6, 2693, 4241, 4608
HphI GGTGA 8 cut(s) 195, 223, 676, 1145, 1927, 2108, 3006, 5494
HpyCH4III ACNGT 4 cut(s) 1901, 3052, 3094, 5011
Hsp92I GRCGYC 7 cut(s) 99, 1643, 2511, 2979, 4215, 5084, 5558
HspAI GCGC 5 cut(s) 2432, 2511, 3679, 5469, 5558
KasI GGCGCC 2 cut(s) 2510, 5557
KflI GGGWCCC 1 cut(s) 4694
Kpn2I TCCGGA 2 cut(s) 5, 4240
KpnI GGTACC 3 cut(s) 1099, 1497, 4075
Ksp22I TGATCA 3 cut(s) 1027, 3175, 4054
LguI GCTCTTC 2 cut(s) 2523, 2580
LmnI GCTCC 8 cut(s) 311, 443, 1873, 2233, 2888, 3790, 5034, 5524
Lsp1109I GCAGC 4 cut(s) 286, 314, 788, 4073
MabI ACCWGGT 1 cut(s) 265
MfeI CAATTG 4 cut(s) 926, 2126, 2814, 5088
MflI RGATCY 7 cut(s) 385, 624, 1561, 1757, 1975, 3601, 4016
MhlI GDGCHC 5 cut(s) 747, 1198, 2535, 5269, 5529
Mly113I GGCGCC 2 cut(s) 2511, 5558
MlyI GAGTC 5 cut(s) 366, 653, 1447, 2761, 5464
MmeI TCCRAC 6 cut(s) 302, 1111, 1148, 1234, 4094, 4509
Mph1103I ATGCAT 4 cut(s) 2083, 2149, 4570, 5056
MroI TCCGGA 2 cut(s) 5, 4240
MroXI GAANNNNTTC 2 cut(s) 473, 3773
MslI CAYNNNNRTG 4 cut(s) 428, 599, 2112, 3632
MspA1I CMGCKG 4 cut(s) 305, 320, 1940, 2207
MspCI CTTAAG 4 cut(s) 2681, 3454, 4355, 5498
MspI CCGG 4 cut(s) 6, 2693, 4241, 4608
MspR9I CCNGG 7 cut(s) 267, 1140, 1980, 3345, 4265, 4777, 5379
MunI CAATTG 4 cut(s) 926, 2126, 2814, 5088
Mva1269I GAATGC 4 cut(s) 1962, 3067, 3324, 3773
MvaI CCWGG 7 cut(s) 267, 1140, 1980, 3345, 4265, 4777, 5379
MvnI CGCG 1 cut(s) 5316
NarI GGCGCC 2 cut(s) 2511, 5558
NcoI CCATGG 1 cut(s) 367
NdeI CATATG 2 cut(s) 419, 4570
NmuCI GTSAC 6 cut(s) 682, 3094, 3521, 3854, 4493, 4918
NsbI TGCGCA 1 cut(s) 2433
NsiI ATGCAT 4 cut(s) 2083, 2149, 4570, 5056
NspI RCATGY 5 cut(s) 769, 1022, 4340, 4590, 4843
NspV TTCGAA 4 cut(s) 1274, 2022, 3444, 5245
OliI CACNNNNGTG 1 cut(s) 3632
PaeI GCATGC 2 cut(s) 4340, 4843
PagI TCATGA 3 cut(s) 1468, 2277, 5299
PceI AGGCCT 2 cut(s) 473, 5255
PciI ACATGT 1 cut(s) 4586
PciSI GCTCTTC 2 cut(s) 2523, 2580
PctI GAATGC 4 cut(s) 1962, 3067, 3324, 3773
PdmI GAANNNNTTC 2 cut(s) 473, 3773
PflFI GACNNNGTC 1 cut(s) 5493
PflMI CCANNNNNTGG 2 cut(s) 269, 5044
PfoI TCCNGGA 1 cut(s) 1138
PinAI ACCGGT 1 cut(s) 4607
PkrI GCNGC 5 cut(s) 301, 304, 778, 814, 4063
PleI GAGTC 5 cut(s) 366, 652, 1446, 2761, 5463
PluTI GGCGCC 2 cut(s) 2514, 5561
PmaCI CACGTG 1 cut(s) 893
PmlI CACGTG 1 cut(s) 893
PpsI GAGTC 5 cut(s) 366, 652, 1446, 2761, 5463
Ppu21I YACGTR 1 cut(s) 893
PpuMI RGGWCCY 4 cut(s) 1615, 4619, 4694, 5015
PscI ACATGT 1 cut(s) 4586
PsiI TTATAA 1 cut(s) 4811
Psp124BI GAGCTC 1 cut(s) 2535
Psp1406I AACGTT 6 cut(s) 2568, 3302, 3481, 4173, 4316, 5041
Psp5II RGGWCCY 4 cut(s) 1615, 4619, 4694, 5015
Psp6I CCWGG 7 cut(s) 265, 1138, 1978, 3343, 4263, 4775, 5377
PspCI CACGTG 1 cut(s) 893
PspFI CCCAGC 1 cut(s) 2203
PspGI CCWGG 7 cut(s) 265, 1138, 1978, 3343, 4263, 4775, 5377
PspPPI RGGWCCY 4 cut(s) 1615, 4619, 4694, 5015
PsrI GAACNNNNNNTAC 2 cut(s) 5374, 5406
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 782
PsuI RGATCY 7 cut(s) 385, 624, 1561, 1757, 1975, 3601, 4016
PsyI GACNNNGTC 1 cut(s) 5493
PvuII CAGCTG 4 cut(s) 305, 320, 1940, 2207
RseI CAYNNNNRTG 4 cut(s) 428, 599, 2112, 3632
SacI GAGCTC 1 cut(s) 2535
SapI GCTCTTC 2 cut(s) 2523, 2580
SatI GCNGC 5 cut(s) 300, 303, 777, 813, 4062
ScaI AGTACT 2 cut(s) 659, 916
SchI GAGTC 5 cut(s) 366, 653, 1447, 2761, 5464
ScrFI CCNGG 7 cut(s) 267, 1140, 1980, 3345, 4265, 4777, 5379
SduI GDGCHC 5 cut(s) 747, 1198, 2535, 5269, 5529
SexAI ACCWGGT 1 cut(s) 265
SfcI CTRYAG 4 cut(s) 300, 3310, 3673, 5010
SfiI GGCCNNNNNGGCC 1 cut(s) 1781
SfoI GGCGCC 2 cut(s) 2512, 5559
SfuI TTCGAA 4 cut(s) 1274, 2022, 3444, 5245
SinI GGWCC 9 cut(s) 8, 901, 1615, 2292, 3151, 4619, 4694, 5015, 5405
SmiMI CAYNNNNRTG 4 cut(s) 428, 599, 2112, 3632
SpeI ACTAGT 1 cut(s) 4198
SphI GCATGC 2 cut(s) 4340, 4843
SseBI AGGCCT 2 cut(s) 473, 5255
SsiI CCGC 2 cut(s) 812, 5316
SspDI GGCGCC 2 cut(s) 2510, 5557
SspI AATATT 1 cut(s) 2359
SstI GAGCTC 1 cut(s) 2535
StuI AGGCCT 2 cut(s) 473, 5255
StyD4I CCNGG 7 cut(s) 265, 1138, 1978, 3343, 4263, 4775, 5377
StyI CCWWGG 5 cut(s) 367, 1106, 4100, 4224, 4277
TaaI ACNGT 4 cut(s) 1901, 3052, 3094, 5011
TaqI TCGA 8 cut(s) 1274, 2022, 2137, 3106, 3222, 3444, 4659, 5245
TatI WGTACW 3 cut(s) 657, 914, 2173
TauI GCSGC 1 cut(s) 815
TscAI CASTG 1 cut(s) 2661
TseFI GTSAC 6 cut(s) 682, 3094, 3521, 3854, 4493, 4918
TseI GCWGC 4 cut(s) 299, 302, 776, 4061
Tsp45I GTSAC 6 cut(s) 682, 3094, 3521, 3854, 4493, 4918
TspGWI ACGGA 3 cut(s) 1424, 2552, 5284
TspRI CASTG 1 cut(s) 2661
Tth111I GACNNNGTC 1 cut(s) 5493
Van91I CCANNNNNTGG 2 cut(s) 269, 5044
Vha464I CTTAAG 4 cut(s) 2681, 3454, 4355, 5498
VneI GTGCAC 2 cut(s) 1194, 5265
VpaK11BI GGWCC 9 cut(s) 8, 901, 1615, 2292, 3151, 4619, 4694, 5015, 5405
XagI CCTNNNNNAGG 2 cut(s) 2278, 5552
XbaI TCTAGA 3 cut(s) 2221, 5360, 5393
XceI RCATGY 5 cut(s) 769, 1022, 4340, 4590, 4843
XcmI CCANNNNNNNNNTGG 1 cut(s) 4225
XmaJI CCTAGG 2 cut(s) 1106, 4100
XmiI GTMKAC 2 cut(s) 2249, 4195
XmnI GAANNNNTTC 2 cut(s) 473, 3773
ZraI GACGTC 2 cut(s) 100, 1644
ZrmI AGTACT 2 cut(s) 659, 916
Zsp2I ATGCAT 4 cut(s) 2083, 2149, 4570, 5056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.