transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| rve | PF00665 | 22 - 115 | 1.3e-17 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 863 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 325 |
| AcsI | RAATTY | 1 cut(s) | 199 |
| AdeI | CACNNNGTG | 1 cut(s) | 325 |
| AfaI | GTAC | 3 cut(s) | 308, 338, 741 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 325, 711, 715 |
| AgsI | TTSAA | 8 cut(s) | 37, 158, 199, 290, 545, 577, 784, 808 |
| AjnI | CCWGG | 1 cut(s) | 772 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 29, 61 |
| AluBI | AGCT | 7 cut(s) | 245, 521, 541, 613, 637, 688, 836 |
| AluI | AGCT | 7 cut(s) | 245, 521, 541, 613, 637, 688, 836 |
| Alw26I | GTCTC | 1 cut(s) | 757 |
| AoxI | GGCC | 2 cut(s) | 561, 702 |
| ApeKI | GCWGC | 2 cut(s) | 264, 885 |
| ApoI | RAATTY | 1 cut(s) | 199 |
| AspS9I | GGNCC | 3 cut(s) | 89, 561, 800 |
| AsuHPI | GGTGA | 1 cut(s) | 716 |
| AvaII | GGWCC | 2 cut(s) | 89, 800 |
| AxyI | CCTNAGG | 2 cut(s) | 352, 710 |
| BanI | GGYRCC | 1 cut(s) | 863 |
| BanII | GRGCYC | 1 cut(s) | 413 |
| BbsI | GAAGAC | 1 cut(s) | 407 |
| BbvI | GCAGC | 1 cut(s) | 276 |
| BccI | CCATC | 5 cut(s) | 106, 251, 348, 572, 713 |
| BciT130I | CCWGG | 1 cut(s) | 774 |
| BciVI | GTATCC | 1 cut(s) | 154 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcoDI | GTCTC | 1 cut(s) | 757 |
| BfaI | CTAG | 1 cut(s) | 789 |
| BfuI | GTATCC | 1 cut(s) | 154 |
| BisI | GCNGC | 2 cut(s) | 265, 886 |
| BlsI | GCNGC | 2 cut(s) | 266, 887 |
| BmcAI | AGTACT | 1 cut(s) | 741 |
| Bme1390I | CCNGG | 1 cut(s) | 774 |
| Bme18I | GGWCC | 2 cut(s) | 89, 800 |
| BmgT120I | GGNCC | 3 cut(s) | 89, 561, 800 |
| BmiI | GGNNCC | 4 cut(s) | 90, 235, 801, 865 |
| BmrFI | CCNGG | 1 cut(s) | 774 |
| BmsI | GCATC | 3 cut(s) | 18, 436, 583 |
| BpiI | GAAGAC | 1 cut(s) | 407 |
| Bsa29I | ATCGAT | 1 cut(s) | 78 |
| BsaAI | YACGTR | 1 cut(s) | 142 |
| BsaJI | CCNNGG | 2 cut(s) | 727, 829 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 325, 711, 715 |
| Bse21I | CCTNAGG | 2 cut(s) | 352, 710 |
| Bse3DI | GCAATG | 1 cut(s) | 162 |
| BseBI | CCWGG | 1 cut(s) | 774 |
| BseCI | ATCGAT | 1 cut(s) | 78 |
| BseDI | CCNNGG | 2 cut(s) | 727, 829 |
| BseGI | GGATG | 4 cut(s) | 98, 340, 598, 705 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 325, 711, 715 |
| BseMI | GCAATG | 1 cut(s) | 162 |
| BseMII | CTCAG | 1 cut(s) | 366 |
| BseXI | GCAGC | 1 cut(s) | 276 |
| BshFI | GGCC | 2 cut(s) | 563, 704 |
| BshNI | GGYRCC | 1 cut(s) | 863 |
| BshVI | ATCGAT | 1 cut(s) | 78 |
| BslFI | GGGAC | 2 cut(s) | 102, 813 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 325, 711, 715 |
| BsmAI | GTCTC | 1 cut(s) | 757 |
| BsmFI | GGGAC | 2 cut(s) | 102, 813 |
| BsmI | GAATGC | 1 cut(s) | 664 |
| BsnI | GGCC | 2 cut(s) | 563, 704 |
| Bsp1286I | GDGCHC | 1 cut(s) | 413 |
| Bsp143I | GATC | 2 cut(s) | 181, 381 |
| BspANI | GGCC | 2 cut(s) | 563, 704 |
| BspCNI | CTCAG | 1 cut(s) | 365 |
| BspDI | ATCGAT | 1 cut(s) | 78 |
| BspHI | TCATGA | 1 cut(s) | 694 |
| BspLI | GGNNCC | 4 cut(s) | 90, 235, 801, 865 |
| BspQI | GCTCTTC | 1 cut(s) | 627 |
| BspT107I | GGYRCC | 1 cut(s) | 863 |
| BsrDI | GCAATG | 1 cut(s) | 162 |
| BssECI | CCNNGG | 2 cut(s) | 727, 829 |
| BssMI | GATC | 2 cut(s) | 181, 381 |
| BssT1I | CCWWGG | 1 cut(s) | 727 |
| Bst2UI | CCWGG | 1 cut(s) | 774 |
| Bst4CI | ACNGT | 2 cut(s) | 406, 551 |
| Bst6I | CTCTTC | 1 cut(s) | 627 |
| BstBAI | YACGTR | 1 cut(s) | 142 |
| BstDEI | CTNAG | 4 cut(s) | 352, 638, 684, 710 |
| BstDSI | CCRYGG | 1 cut(s) | 829 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 713 |
| BstF5I | GGATG | 4 cut(s) | 98, 340, 598, 705 |
| BstKTI | GATC | 2 cut(s) | 184, 384 |
| BstMAI | GTCTC | 1 cut(s) | 757 |
| BstMBI | GATC | 2 cut(s) | 181, 381 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 273, 455, 538, 560, 602 |
| BstNI | CCWGG | 1 cut(s) | 774 |
| BstSCI | CCNGG | 1 cut(s) | 772 |
| BstSNI | TACGTA | 1 cut(s) | 142 |
| BstV1I | GCAGC | 1 cut(s) | 276 |
| BstV2I | GAAGAC | 1 cut(s) | 407 |
| Bsu15I | ATCGAT | 1 cut(s) | 78 |
| Bsu36I | CCTNAGG | 2 cut(s) | 352, 710 |
| BsuI | GTATCC | 1 cut(s) | 154 |
| BsuRI | GGCC | 2 cut(s) | 563, 704 |
| BsuTUI | ATCGAT | 1 cut(s) | 78 |
| BtgI | CCRYGG | 1 cut(s) | 829 |
| BtsCI | GGATG | 4 cut(s) | 98, 340, 598, 705 |
| BtsI | GCAGTG | 1 cut(s) | 138 |
| BtsIMutI | CAGTG | 1 cut(s) | 138 |
| CciI | TCATGA | 1 cut(s) | 694 |
| Cfr13I | GGNCC | 3 cut(s) | 89, 561, 800 |
| ClaI | ATCGAT | 1 cut(s) | 78 |
| Csp6I | GTAC | 3 cut(s) | 307, 337, 740 |
| CviAII | CATG | 4 cut(s) | 85, 490, 695, 853 |
| CviQI | GTAC | 3 cut(s) | 307, 337, 740 |
| DdeI | CTNAG | 4 cut(s) | 352, 638, 684, 710 |
| DpnI | GATC | 2 cut(s) | 183, 383 |
| DpnII | GATC | 2 cut(s) | 181, 381 |
| DraI | TTTAAA | 1 cut(s) | 873 |
| DraIII | CACNNNGTG | 1 cut(s) | 325 |
| Eam1104I | CTCTTC | 1 cut(s) | 627 |
| EarI | CTCTTC | 1 cut(s) | 627 |
| Eco105I | TACGTA | 1 cut(s) | 142 |
| Eco130I | CCWWGG | 1 cut(s) | 727 |
| Eco24I | GRGCYC | 1 cut(s) | 413 |
| Eco47I | GGWCC | 2 cut(s) | 89, 800 |
| Eco81I | CCTNAGG | 2 cut(s) | 352, 710 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 713 |
| EcoRII | CCWGG | 1 cut(s) | 772 |
| EcoT14I | CCWWGG | 1 cut(s) | 727 |
| EcoT38I | GRGCYC | 1 cut(s) | 413 |
| ErhI | CCWWGG | 1 cut(s) | 727 |
| FaeI | CATG | 4 cut(s) | 88, 493, 698, 856 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 563, 595 |
| FaqI | GGGAC | 2 cut(s) | 102, 813 |
| FatI | CATG | 4 cut(s) | 84, 489, 694, 852 |
| FauNDI | CATATG | 1 cut(s) | 652 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 2 cut(s) | 265, 886 |
| FokI | GGATG | 4 cut(s) | 85, 327, 605, 692 |
| FriOI | GRGCYC | 1 cut(s) | 413 |
| Fsp4HI | GCNGC | 2 cut(s) | 265, 886 |
| FspBI | CTAG | 1 cut(s) | 789 |
| GluI | GCNGC | 2 cut(s) | 265, 886 |
| HaeIII | GGCC | 2 cut(s) | 563, 704 |
| Hin1II | CATG | 4 cut(s) | 88, 493, 698, 856 |
| HindIII | AAGCTT | 1 cut(s) | 519 |
| HinfI | GANTC | 3 cut(s) | 75, 290, 493 |
| HphI | GGTGA | 1 cut(s) | 716 |
| Hpy188III | TCNNGA | 4 cut(s) | 354, 385, 568, 695 |
| HpyAV | CCTTC | 2 cut(s) | 415, 709 |
| HpyCH4III | ACNGT | 2 cut(s) | 406, 551 |
| HpyCH4IV | ACGT | 2 cut(s) | 141, 757 |
| HpyCH4V | TGCA | 3 cut(s) | 276, 449, 554 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 273, 455, 538, 560, 602 |
| HpyF3I | CTNAG | 4 cut(s) | 352, 638, 684, 710 |
| HpySE526I | ACGT | 2 cut(s) | 141, 757 |
| Hsp92II | CATG | 4 cut(s) | 88, 493, 698, 856 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| Kzo9I | GATC | 2 cut(s) | 181, 381 |
| LguI | GCTCTTC | 1 cut(s) | 627 |
| LmnI | GCTCC | 3 cut(s) | 538, 618, 833 |
| LpnPI | CCDG | 4 cut(s) | 339, 582, 759, 786 |
| Lsp1109I | GCAGC | 1 cut(s) | 276 |
| LweI | GCATC | 3 cut(s) | 18, 436, 583 |
| MaeI | CTAG | 1 cut(s) | 789 |
| MaeII | ACGT | 2 cut(s) | 141, 757 |
| MaeIII | GTNAC | 1 cut(s) | 813 |
| MalI | GATC | 2 cut(s) | 183, 383 |
| MboI | GATC | 2 cut(s) | 181, 381 |
| MboII | GAAGA | 4 cut(s) | 313, 412, 644, 868 |
| MhlI | GDGCHC | 1 cut(s) | 413 |
| MluCI | AATT | 2 cut(s) | 199, 779 |
| MlyI | GAGTC | 1 cut(s) | 502 |
| MmeI | TCCRAC | 2 cut(s) | 609, 640 |
| MnlI | CCTC | 6 cut(s) | 112, 354, 361, 429, 640, 877 |
| MseI | TTAA | 4 cut(s) | 207, 440, 621, 872 |
| MslI | CAYNNNNRTG | 4 cut(s) | 47, 125, 395, 488 |
| MspR9I | CCNGG | 1 cut(s) | 774 |
| Mva1269I | GAATGC | 1 cut(s) | 664 |
| MvaI | CCWGG | 1 cut(s) | 774 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 273, 455, 538, 560, 602 |
| NdeI | CATATG | 1 cut(s) | 652 |
| NdeII | GATC | 2 cut(s) | 181, 381 |
| NlaIII | CATG | 4 cut(s) | 88, 493, 698, 856 |
| NlaIV | GGNNCC | 4 cut(s) | 90, 235, 801, 865 |
| PagI | TCATGA | 1 cut(s) | 694 |
| PciSI | GCTCTTC | 1 cut(s) | 627 |
| PctI | GAATGC | 1 cut(s) | 664 |
| PfeI | GAWTC | 2 cut(s) | 75, 290 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 325 |
| PkrI | GCNGC | 2 cut(s) | 266, 887 |
| PleI | GAGTC | 1 cut(s) | 501 |
| PpsI | GAGTC | 1 cut(s) | 501 |
| Ppu21I | YACGTR | 1 cut(s) | 142 |
| Psp6I | CCWGG | 1 cut(s) | 772 |
| PspGI | CCWGG | 1 cut(s) | 772 |
| PspN4I | GGNNCC | 4 cut(s) | 90, 235, 801, 865 |
| PspPI | GGNCC | 3 cut(s) | 89, 561, 800 |
| RsaI | GTAC | 3 cut(s) | 308, 338, 741 |
| RsaNI | GTAC | 3 cut(s) | 307, 337, 740 |
| RseI | CAYNNNNRTG | 4 cut(s) | 47, 125, 395, 488 |
| SapI | GCTCTTC | 1 cut(s) | 627 |
| SaqAI | TTAA | 4 cut(s) | 207, 440, 621, 872 |
| SatI | GCNGC | 2 cut(s) | 265, 886 |
| Sau3AI | GATC | 2 cut(s) | 181, 381 |
| Sau96I | GGNCC | 3 cut(s) | 89, 561, 800 |
| ScaI | AGTACT | 1 cut(s) | 741 |
| SchI | GAGTC | 1 cut(s) | 502 |
| ScrFI | CCNGG | 1 cut(s) | 774 |
| SduI | GDGCHC | 1 cut(s) | 413 |
| SfaNI | GCATC | 3 cut(s) | 18, 436, 583 |
| SinI | GGWCC | 2 cut(s) | 89, 800 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 47, 125, 395, 488 |
| SnaBI | TACGTA | 1 cut(s) | 142 |
| Sse9I | AATT | 2 cut(s) | 199, 779 |
| SspMI | CTAG | 1 cut(s) | 789 |
| StyD4I | CCNGG | 1 cut(s) | 772 |
| StyI | CCWWGG | 1 cut(s) | 727 |
| TaaI | ACNGT | 2 cut(s) | 406, 551 |
| TaiI | ACGT | 2 cut(s) | 144, 760 |
| TaqI | TCGA | 1 cut(s) | 78 |
| TasI | AATT | 2 cut(s) | 199, 779 |
| TatI | WGTACW | 2 cut(s) | 306, 739 |
| TfiI | GAWTC | 2 cut(s) | 75, 290 |
| Tru1I | TTAA | 4 cut(s) | 207, 440, 621, 872 |
| Tru9I | TTAA | 4 cut(s) | 207, 440, 621, 872 |
| TscAI | CASTG | 1 cut(s) | 138 |
| TseI | GCWGC | 2 cut(s) | 264, 885 |
| TspDTI | ATGAA | 5 cut(s) | 73, 314, 413, 749, 869 |
| TspGWI | ACGGA | 2 cut(s) | 694, 846 |
| TspRI | CASTG | 1 cut(s) | 138 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 325 |
| VpaK11BI | GGWCC | 2 cut(s) | 89, 800 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 713 |
| XapI | RAATTY | 1 cut(s) | 199 |
| XspI | CTAG | 1 cut(s) | 789 |
| ZrmI | AGTACT | 1 cut(s) | 741 |