transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 136 - 230 | 5.2e-20 | Retrotransposon gag protein |
| RVT_1 | PF00078 | 1008 - 1167 | 1.3e-31 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 1192 - 1287 | 4.1e-31 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 1214 - 1317 | 9.7e-36 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 1419 - 1476 | 2.5e-12 | Integrase zinc binding domain |
| rve | PF00665 | 1497 - 1590 | 4.2e-16 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3180 |
| AarI | CACCTGC | 2 cut(s) | 4239, 4441 |
| Acc36I | ACCTGC | 3 cut(s) | 2255, 4239, 4441 |
| Acc65I | GGTACC | 1 cut(s) | 5687 |
| AccB1I | GGYRCC | 4 cut(s) | 3239, 4453, 5381, 5687 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3469, 5427 |
| AccBSI | CCGCTC | 2 cut(s) | 604, 6109 |
| AccII | CGCG | 4 cut(s) | 224, 5321, 5360, 5369 |
| AccIII | TCCGGA | 1 cut(s) | 2981 |
| AclWI | GGATC | 8 cut(s) | 809, 822, 1940, 1953, 2432, 3654, 4202, 5474 |
| AcoI | YGGCCR | 5 cut(s) | 3139, 4367, 5491, 5530, 5859 |
| AcuI | CTGAAG | 5 cut(s) | 483, 2663, 2676, 4922, 6153 |
| AcyI | GRCGYC | 3 cut(s) | 2245, 2857, 5240 |
| AdeI | CACNNNGTG | 1 cut(s) | 1718 |
| AfeI | AGCGCT | 2 cut(s) | 1909, 5544 |
| AflII | CTTAAG | 2 cut(s) | 1516, 2734 |
| AflIII | ACRYGT | 1 cut(s) | 5134 |
| AgeI | ACCGGT | 2 cut(s) | 5286, 5883 |
| AjiI | CACGTC | 1 cut(s) | 1018 |
| AjnI | CCWGG | 8 cut(s) | 1069, 1948, 3083, 5078, 5095, 5861, 5922, 6157 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5665, 5697 |
| Alw21I | GWGCWC | 6 cut(s) | 541, 958, 3018, 3637, 5375, 6001 |
| AlwI | GGATC | 8 cut(s) | 809, 822, 1940, 1953, 2432, 3654, 4202, 5474 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 88 |
| Ama87I | CYCGRG | 2 cut(s) | 5438, 5775 |
| Aor13HI | TCCGGA | 1 cut(s) | 2981 |
| Aor51HI | AGCGCT | 2 cut(s) | 1909, 5544 |
| AoxI | GGCC | 8 cut(s) | 1357, 1410, 3139, 4367, 5491, 5530, 5766, 5859 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4453, 4485 |
| AseI | ATTAAT | 5 cut(s) | 1383, 1785, 3545, 4050, 4911 |
| AsiGI | ACCGGT | 2 cut(s) | 5286, 5883 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 585, 1034, 2414 |
| Asp718I | GGTACC | 1 cut(s) | 5687 |
| AspA2I | CCTAGG | 1 cut(s) | 182 |
| AspLEI | GCGC | 5 cut(s) | 189, 226, 439, 1910, 5545 |
| AsuC2I | CCSGG | 2 cut(s) | 5776, 5777 |
| AsuII | TTCGAA | 3 cut(s) | 1055, 3551, 4796 |
| AvaI | CYCGRG | 2 cut(s) | 5438, 5775 |
| AvrII | CCTAGG | 1 cut(s) | 182 |
| AxyI | CCTNAGG | 1 cut(s) | 5377 |
| BaeGI | GKGCMC | 2 cut(s) | 995, 2592 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2686, 2719, 3160, 3193 |
| BalI | TGGCCA | 3 cut(s) | 3141, 4369, 5493 |
| BamHI | GGATCC | 2 cut(s) | 814, 1945 |
| BanI | GGYRCC | 4 cut(s) | 3239, 4453, 5381, 5687 |
| BanII | GRGCYC | 1 cut(s) | 3018 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 650, 682 |
| BbsI | GAAGAC | 4 cut(s) | 1191, 3307, 5009, 5836 |
| Bbv12I | GWGCWC | 6 cut(s) | 541, 958, 3018, 3637, 5375, 6001 |
| BbvCI | CCTCAGC | 1 cut(s) | 4961 |
| BceAI | ACGGC | 3 cut(s) | 564, 1397, 5753 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2091, 2125 |
| BciT130I | CCWGG | 8 cut(s) | 1071, 1950, 3085, 5080, 5097, 5863, 5924, 6159 |
| BciVI | GTATCC | 3 cut(s) | 2130, 2197, 3161 |
| BclI | TGATCA | 6 cut(s) | 43, 139, 3115, 3868, 3997, 4606 |
| BcnI | CCSGG | 2 cut(s) | 5776, 5777 |
| BfmI | CTRYAG | 5 cut(s) | 2262, 2358, 3061, 4182, 5988 |
| BfoI | RGCGCY | 2 cut(s) | 1911, 5546 |
| BfrI | CTTAAG | 2 cut(s) | 1516, 2734 |
| BfuAI | ACCTGC | 3 cut(s) | 2255, 4239, 4441 |
| BfuI | GTATCC | 3 cut(s) | 2130, 2197, 3161 |
| BglII | AGATCT | 1 cut(s) | 487 |
| BlnI | CCTAGG | 1 cut(s) | 182 |
| BlpI | GCTNAGC | 1 cut(s) | 2832 |
| BmcAI | AGTACT | 3 cut(s) | 668, 2527, 4226 |
| BmeT110I | CYCGRG | 2 cut(s) | 5438, 5775 |
| BmgBI | CACGTC | 1 cut(s) | 1018 |
| BmrI | ACTGGG | 1 cut(s) | 98 |
| BmuI | ACTGGG | 1 cut(s) | 98 |
| BpiI | GAAGAC | 4 cut(s) | 1191, 3307, 5009, 5836 |
| BpmI | CTGGAG | 3 cut(s) | 729, 3267, 5602 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4961 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2832 |
| Bpu14I | TTCGAA | 3 cut(s) | 1055, 3551, 4796 |
| BpuMI | CCSGG | 2 cut(s) | 5776, 5777 |
| BsaAI | YACGTR | 1 cut(s) | 5898 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3645, 5471 |
| BsaHI | GRCGYC | 3 cut(s) | 2245, 2857, 5240 |
| BsaI | GGTCTC | 5 cut(s) | 1039, 2550, 2570, 2630, 2838 |
| BsaWI | WCCGGW | 5 cut(s) | 2981, 3173, 3637, 5286, 5883 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 3155, 3185, 5705, 5735 |
| Bse118I | RCCGGY | 4 cut(s) | 4141, 5286, 5793, 5883 |
| Bse21I | CCTNAGG | 1 cut(s) | 5377 |
| Bse3DI | GCAATG | 3 cut(s) | 632, 1793, 5252 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3645, 5471 |
| BseAI | TCCGGA | 1 cut(s) | 2981 |
| BseBI | CCWGG | 8 cut(s) | 1071, 1950, 3085, 5080, 5097, 5863, 5924, 6159 |
| BseJI | GATNNNNATC | 2 cut(s) | 3645, 5471 |
| BseMI | GCAATG | 3 cut(s) | 632, 1793, 5252 |
| BseRI | GAGGAG | 6 cut(s) | 864, 902, 2726, 2729, 3552, 6107 |
| BseSI | GKGCMC | 2 cut(s) | 995, 2592 |
| BseX3I | CGGCCG | 1 cut(s) | 5530 |
| BseYI | CCCAGC | 2 cut(s) | 994, 1603 |
| BsgI | GTGCAG | 3 cut(s) | 1799, 2414, 2910 |
| Bsh1236I | CGCG | 4 cut(s) | 224, 5321, 5360, 5369 |
| Bsh1285I | CGRYCG | 1 cut(s) | 5533 |
| BshFI | GGCC | 8 cut(s) | 1359, 1412, 3141, 4369, 5493, 5532, 5768, 5861 |
| BshNI | GGYRCC | 4 cut(s) | 3239, 4453, 5381, 5687 |
| BshTI | ACCGGT | 2 cut(s) | 5286, 5883 |
| BsiEI | CGRYCG | 1 cut(s) | 5533 |
| BsiHKAI | GWGCWC | 6 cut(s) | 541, 958, 3018, 3637, 5375, 6001 |
| BsiHKCI | CYCGRG | 2 cut(s) | 5438, 5775 |
| BsiWI | CGTACG | 1 cut(s) | 5898 |
| BslFI | GGGAC | 6 cut(s) | 1329, 3991, 5251, 5403, 5546, 5576 |
| BsmBI | CGTCTC | 1 cut(s) | 5339 |
| BsmFI | GGGAC | 6 cut(s) | 1329, 3991, 5251, 5403, 5546, 5576 |
| BsmI | GAATGC | 5 cut(s) | 1034, 1036, 3007, 3264, 4987 |
| BsnI | GGCC | 8 cut(s) | 1359, 1412, 3141, 4369, 5493, 5532, 5768, 5861 |
| Bso31I | GGTCTC | 5 cut(s) | 1039, 2550, 2570, 2630, 2838 |
| BsoBI | CYCGRG | 2 cut(s) | 5438, 5775 |
| Bsp119I | TTCGAA | 3 cut(s) | 1055, 3551, 4796 |
| Bsp1286I | GDGCHC | 8 cut(s) | 541, 958, 995, 2592, 3018, 3637, 5375, 6001 |
| Bsp13I | TCCGGA | 1 cut(s) | 2981 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2832 |
| Bsp19I | CCATGG | 2 cut(s) | 637, 1097 |
| BspANI | GGCC | 8 cut(s) | 1359, 1412, 3141, 4369, 5493, 5532, 5768, 5861 |
| BspEI | TCCGGA | 1 cut(s) | 2981 |
| BspFNI | CGCG | 4 cut(s) | 224, 5321, 5360, 5369 |
| BspHI | TCATGA | 3 cut(s) | 589, 976, 5017 |
| BspMAI | CTGCAG | 1 cut(s) | 2266 |
| BspMI | ACCTGC | 3 cut(s) | 2255, 4239, 4441 |
| BspPI | GGATC | 8 cut(s) | 809, 822, 1940, 1953, 2432, 3654, 4202, 5474 |
| BspQI | GCTCTTC | 1 cut(s) | 2232 |
| BspT104I | TTCGAA | 3 cut(s) | 1055, 3551, 4796 |
| BspT107I | GGYRCC | 4 cut(s) | 3239, 4453, 5381, 5687 |
| BspTI | CTTAAG | 2 cut(s) | 1516, 2734 |
| BspTNI | GGTCTC | 5 cut(s) | 1039, 2550, 2570, 2630, 2838 |
| BsrBI | CCGCTC | 2 cut(s) | 604, 6109 |
| BsrDI | GCAATG | 3 cut(s) | 632, 1793, 5252 |
| BsrFI | RCCGGY | 4 cut(s) | 4141, 5286, 5793, 5883 |
| BssAI | RCCGGY | 4 cut(s) | 4141, 5286, 5793, 5883 |
| BssNI | GRCGYC | 3 cut(s) | 2245, 2857, 5240 |
| BssT1I | CCWWGG | 7 cut(s) | 182, 637, 1097, 1407, 1530, 3490, 4097 |
| Bst2UI | CCWGG | 8 cut(s) | 1071, 1950, 3085, 5080, 5097, 5863, 5924, 6159 |
| Bst6I | CTCTTC | 7 cut(s) | 462, 1217, 1280, 2232, 2634, 4223, 5405 |
| BstACI | GRCGYC | 3 cut(s) | 2245, 2857, 5240 |
| BstAFI | CTTAAG | 2 cut(s) | 1516, 2734 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2968 |
| BstBAI | YACGTR | 1 cut(s) | 5898 |
| BstBI | TTCGAA | 3 cut(s) | 1055, 3551, 4796 |
| BstDSI | CCRYGG | 2 cut(s) | 637, 1097 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4411 |
| BstFNI | CGCG | 4 cut(s) | 224, 5321, 5360, 5369 |
| BstH2I | RGCGCY | 2 cut(s) | 1911, 5546 |
| BstHHI | GCGC | 5 cut(s) | 189, 226, 439, 1910, 5545 |
| BstMCI | CGRYCG | 1 cut(s) | 5533 |
| BstNI | CCWGG | 8 cut(s) | 1071, 1950, 3085, 5080, 5097, 5863, 5924, 6159 |
| BstNSI | RCATGY | 8 cut(s) | 338, 859, 1096, 1406, 2430, 2806, 3620, 5138 |
| BstSFI | CTRYAG | 5 cut(s) | 2262, 2358, 3061, 4182, 5988 |
| BstSLI | GKGCMC | 2 cut(s) | 995, 2592 |
| BstSNI | TACGTA | 1 cut(s) | 5898 |
| BstUI | CGCG | 4 cut(s) | 224, 5321, 5360, 5369 |
| BstV2I | GAAGAC | 4 cut(s) | 1191, 3307, 5009, 5836 |
| BstX2I | RGATCY | 5 cut(s) | 487, 814, 1945, 2437, 3646 |
| BstYI | RGATCY | 5 cut(s) | 487, 814, 1945, 2437, 3646 |
| BstZI | CGGCCG | 1 cut(s) | 5530 |
| Bsu36I | CCTNAGG | 1 cut(s) | 5377 |
| BsuI | GTATCC | 3 cut(s) | 2130, 2197, 3161 |
| BsuRI | GGCC | 8 cut(s) | 1359, 1412, 3141, 4369, 5493, 5532, 5768, 5861 |
| BtgI | CCRYGG | 2 cut(s) | 637, 1097 |
| BtgZI | GCGATG | 2 cut(s) | 3684, 4047 |
| BtrI | CACGTC | 1 cut(s) | 1018 |
| BtsI | GCAGTG | 2 cut(s) | 4586, 5160 |
| BveI | ACCTGC | 3 cut(s) | 2255, 4239, 4441 |
| CaiI | CAGNNNCTG | 1 cut(s) | 88 |
| CciI | TCATGA | 3 cut(s) | 589, 976, 5017 |
| CfoI | GCGC | 5 cut(s) | 189, 226, 439, 1910, 5545 |
| Cfr10I | RCCGGY | 4 cut(s) | 4141, 5286, 5793, 5883 |
| Cfr9I | CCCGGG | 1 cut(s) | 5775 |
| CseI | GACGC | 5 cut(s) | 2234, 2865, 3622, 5248, 5349 |
| CsiI | ACCWGGT | 1 cut(s) | 1069 |
| CspAI | ACCGGT | 2 cut(s) | 5286, 5883 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 217, 252 |
| DraIII | CACNNNGTG | 1 cut(s) | 1718 |
| EaeI | YGGCCR | 5 cut(s) | 3139, 4367, 5491, 5530, 5859 |
| EagI | CGGCCG | 1 cut(s) | 5530 |
| Eam1104I | CTCTTC | 7 cut(s) | 462, 1217, 1280, 2232, 2634, 4223, 5405 |
| EarI | CTCTTC | 7 cut(s) | 462, 1217, 1280, 2232, 2634, 4223, 5405 |
| EciI | GGCGGA | 1 cut(s) | 5353 |
| Ecl136II | GAGCTC | 1 cut(s) | 3016 |
| EclXI | CGGCCG | 1 cut(s) | 5530 |
| Eco105I | TACGTA | 1 cut(s) | 5898 |
| Eco130I | CCWWGG | 7 cut(s) | 182, 637, 1097, 1407, 1530, 3490, 4097 |
| Eco24I | GRGCYC | 1 cut(s) | 3018 |
| Eco31I | GGTCTC | 5 cut(s) | 1039, 2550, 2570, 2630, 2838 |
| Eco47III | AGCGCT | 2 cut(s) | 1909, 5544 |
| Eco52I | CGGCCG | 1 cut(s) | 5530 |
| Eco53kI | GAGCTC | 1 cut(s) | 3016 |
| Eco57I | CTGAAG | 5 cut(s) | 483, 2663, 2676, 4922, 6153 |
| Eco81I | CCTNAGG | 1 cut(s) | 5377 |
| Eco88I | CYCGRG | 2 cut(s) | 5438, 5775 |
| EcoICRI | GAGCTC | 1 cut(s) | 3016 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4411 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1999, 3750, 5417, 5590 |
| EcoRI | GAATTC | 1 cut(s) | 5744 |
| EcoRII | CCWGG | 8 cut(s) | 1069, 1948, 3083, 5078, 5095, 5861, 5922, 6157 |
| EcoT14I | CCWWGG | 7 cut(s) | 182, 637, 1097, 1407, 1530, 3490, 4097 |
| EcoT22I | ATGCAT | 5 cut(s) | 1036, 2347, 2653, 3305, 4390 |
| EcoT38I | GRGCYC | 1 cut(s) | 3018 |
| ErhI | CCWWGG | 7 cut(s) | 182, 637, 1097, 1407, 1530, 3490, 4097 |
| Esp3I | CGTCTC | 1 cut(s) | 5339 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 332, 364, 4181, 4213 |
| FaqI | GGGAC | 6 cut(s) | 1329, 3991, 5251, 5403, 5546, 5576 |
| FauI | CCCGC | 5 cut(s) | 2874, 5171, 5268, 5501, 5601 |
| FauNDI | CATATG | 1 cut(s) | 2871 |
| FbaI | TGATCA | 6 cut(s) | 43, 139, 3115, 3868, 3997, 4606 |
| FriOI | GRGCYC | 1 cut(s) | 3018 |
| GlaI | GCGC | 5 cut(s) | 188, 225, 438, 1909, 5544 |
| GsaI | CCCAGC | 2 cut(s) | 998, 1607 |
| GsuI | CTGGAG | 3 cut(s) | 729, 3267, 5602 |
| HaeII | RGCGCY | 2 cut(s) | 1911, 5546 |
| HaeIII | GGCC | 8 cut(s) | 1359, 1412, 3141, 4369, 5493, 5532, 5768, 5861 |
| HgaI | GACGC | 5 cut(s) | 2234, 2865, 3622, 5248, 5349 |
| HhaI | GCGC | 5 cut(s) | 189, 226, 439, 1910, 5545 |
| Hin1I | GRCGYC | 3 cut(s) | 2245, 2857, 5240 |
| Hin6I | GCGC | 5 cut(s) | 187, 224, 437, 1908, 5543 |
| HinP1I | GCGC | 5 cut(s) | 187, 224, 437, 1908, 5543 |
| HincII | GTYRAC | 8 cut(s) | 385, 1292, 1373, 2298, 3715, 4702, 5881, 5982 |
| HindII | GTYRAC | 8 cut(s) | 385, 1292, 1373, 2298, 3715, 4702, 5881, 5982 |
| HindIII | AAGCTT | 7 cut(s) | 727, 1298, 3554, 3719, 4934, 4971, 5025 |
| HpaI | GTTAAC | 2 cut(s) | 3715, 4702 |
| Hpy99I | CGWCG | 4 cut(s) | 4028, 5360, 5390, 6106 |
| HpyCH4IV | ACGT | 8 cut(s) | 1017, 1686, 1803, 3987, 5522, 5680, 5889, 5897 |
| HpySE526I | ACGT | 8 cut(s) | 1017, 1686, 1803, 3987, 5522, 5680, 5889, 5897 |
| Hsp92I | GRCGYC | 3 cut(s) | 2245, 2857, 5240 |
| HspAI | GCGC | 5 cut(s) | 187, 224, 437, 1908, 5543 |
| Kpn2I | TCCGGA | 1 cut(s) | 2981 |
| KpnI | GGTACC | 1 cut(s) | 5691 |
| Ksp22I | TGATCA | 6 cut(s) | 43, 139, 3115, 3868, 3997, 4606 |
| KspAI | GTTAAC | 2 cut(s) | 3715, 4702 |
| LguI | GCTCTTC | 1 cut(s) | 2232 |
| MabI | ACCWGGT | 1 cut(s) | 1069 |
| MaeII | ACGT | 8 cut(s) | 1017, 1686, 1803, 3987, 5522, 5680, 5889, 5897 |
| MbiI | CCGCTC | 2 cut(s) | 604, 6109 |
| MfeI | CAATTG | 2 cut(s) | 2766, 6117 |
| MflI | RGATCY | 5 cut(s) | 487, 814, 1945, 2437, 3646 |
| MhlI | GDGCHC | 8 cut(s) | 541, 958, 995, 2592, 3018, 3637, 5375, 6001 |
| MlsI | TGGCCA | 3 cut(s) | 3141, 4369, 5493 |
| MluNI | TGGCCA | 3 cut(s) | 3141, 4369, 5493 |
| MlyI | GAGTC | 7 cut(s) | 55, 913, 1297, 2739, 2962, 4843, 5568 |
| Mox20I | TGGCCA | 3 cut(s) | 3141, 4369, 5493 |
| Mph1103I | ATGCAT | 5 cut(s) | 1036, 2347, 2653, 3305, 4390 |
| MroI | TCCGGA | 1 cut(s) | 2981 |
| MroXI | GAANNNNTTC | 3 cut(s) | 585, 1034, 2414 |
| MscI | TGGCCA | 3 cut(s) | 3141, 4369, 5493 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1503, 4299 |
| Msp20I | TGGCCA | 3 cut(s) | 3141, 4369, 5493 |
| MspA1I | CMGCKG | 3 cut(s) | 1607, 4459, 5279 |
| MspCI | CTTAAG | 2 cut(s) | 1516, 2734 |
| MunI | CAATTG | 2 cut(s) | 2766, 6117 |
| Mva1269I | GAATGC | 5 cut(s) | 1034, 1036, 3007, 3264, 4987 |
| MvaI | CCWGG | 8 cut(s) | 1071, 1950, 3085, 5080, 5097, 5863, 5924, 6159 |
| MvnI | CGCG | 4 cut(s) | 224, 5321, 5360, 5369 |
| NciI | CCSGG | 2 cut(s) | 5776, 5777 |
| NcoI | CCATGG | 2 cut(s) | 637, 1097 |
| NdeI | CATATG | 1 cut(s) | 2871 |
| NmuCI | GTSAC | 7 cut(s) | 102, 3034, 3146, 3853, 4313, 4679, 5954 |
| NsiI | ATGCAT | 5 cut(s) | 1036, 2347, 2653, 3305, 4390 |
| NspI | RCATGY | 8 cut(s) | 338, 859, 1096, 1406, 2430, 2806, 3620, 5138 |
| NspV | TTCGAA | 3 cut(s) | 1055, 3551, 4796 |
| PaeI | GCATGC | 3 cut(s) | 1406, 2806, 3620 |
| PaeR7I | CTCGAG | 1 cut(s) | 5438 |
| PagI | TCATGA | 3 cut(s) | 589, 976, 5017 |
| PaqCI | CACCTGC | 2 cut(s) | 4239, 4441 |
| PciI | ACATGT | 1 cut(s) | 5134 |
| PciSI | GCTCTTC | 1 cut(s) | 2232 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 4029, 5445, 5454 |
| PctI | GAATGC | 5 cut(s) | 1034, 1036, 3007, 3264, 4987 |
| PdmI | GAANNNNTTC | 3 cut(s) | 585, 1034, 2414 |
| Pfl23II | CGTACG | 1 cut(s) | 5898 |
| PflFI | GACNNNGTC | 1 cut(s) | 5612 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3469, 5427 |
| PfoI | TCCNGGA | 1 cut(s) | 6157 |
| PinAI | ACCGGT | 2 cut(s) | 5286, 5883 |
| PleI | GAGTC | 7 cut(s) | 55, 913, 1296, 2738, 2961, 4842, 5567 |
| PpsI | GAGTC | 7 cut(s) | 55, 913, 1296, 2738, 2961, 4842, 5567 |
| Ppu21I | YACGTR | 1 cut(s) | 5898 |
| PpuMI | RGGWCCY | 4 cut(s) | 1999, 3750, 5417, 5590 |
| PscI | ACATGT | 1 cut(s) | 5134 |
| PshBI | ATTAAT | 5 cut(s) | 1383, 1785, 3545, 4050, 4911 |
| PsiI | TTATAA | 1 cut(s) | 3180 |
| Psp124BI | GAGCTC | 1 cut(s) | 3018 |
| Psp5II | RGGWCCY | 4 cut(s) | 1999, 3750, 5417, 5590 |
| Psp6I | CCWGG | 8 cut(s) | 1069, 1948, 3083, 5078, 5095, 5861, 5922, 6157 |
| PspFI | CCCAGC | 2 cut(s) | 994, 1603 |
| PspGI | CCWGG | 8 cut(s) | 1069, 1948, 3083, 5078, 5095, 5861, 5922, 6157 |
| PspLI | CGTACG | 1 cut(s) | 5898 |
| PspPPI | RGGWCCY | 4 cut(s) | 1999, 3750, 5417, 5590 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5699, 5731 |
| PstI | CTGCAG | 1 cut(s) | 2266 |
| PstNI | CAGNNNCTG | 1 cut(s) | 88 |
| PsuI | RGATCY | 5 cut(s) | 487, 814, 1945, 2437, 3646 |
| PsyI | GACNNNGTC | 1 cut(s) | 5612 |
| PvuII | CAGCTG | 2 cut(s) | 1607, 5279 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1503, 4299 |
| SacI | GAGCTC | 1 cut(s) | 3018 |
| SapI | GCTCTTC | 1 cut(s) | 2232 |
| ScaI | AGTACT | 3 cut(s) | 668, 2527, 4226 |
| SchI | GAGTC | 7 cut(s) | 55, 913, 1297, 2739, 2962, 4843, 5568 |
| SduI | GDGCHC | 8 cut(s) | 541, 958, 995, 2592, 3018, 3637, 5375, 6001 |
| SexAI | ACCWGGT | 1 cut(s) | 1069 |
| SfcI | CTRYAG | 5 cut(s) | 2262, 2358, 3061, 4182, 5988 |
| Sfr274I | CTCGAG | 1 cut(s) | 5438 |
| SfuI | TTCGAA | 3 cut(s) | 1055, 3551, 4796 |
| SlaI | CTCGAG | 1 cut(s) | 5438 |
| SmaI | CCCGGG | 1 cut(s) | 5777 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1503, 4299 |
| SnaBI | TACGTA | 1 cut(s) | 5898 |
| SphI | GCATGC | 3 cut(s) | 1406, 2806, 3620 |
| SspI | AATATT | 5 cut(s) | 1422, 2485, 4468, 5187, 6165 |
| SstI | GAGCTC | 1 cut(s) | 3018 |
| StyI | CCWWGG | 7 cut(s) | 182, 637, 1097, 1407, 1530, 3490, 4097 |
| TaiI | ACGT | 8 cut(s) | 1020, 1689, 1806, 3990, 5525, 5683, 5892, 5900 |
| TatI | WGTACW | 6 cut(s) | 216, 666, 2525, 4224, 5706, 6189 |
| TauI | GCSGC | 4 cut(s) | 4459, 5369, 5535, 5861 |
| TseFI | GTSAC | 7 cut(s) | 102, 3034, 3146, 3853, 4313, 4679, 5954 |
| Tsp45I | GTSAC | 7 cut(s) | 102, 3034, 3146, 3853, 4313, 4679, 5954 |
| TspGWI | ACGGA | 7 cut(s) | 315, 3180, 3587, 4698, 5344, 5363, 6119 |
| TspMI | CCCGGG | 1 cut(s) | 5775 |
| Tth111I | GACNNNGTC | 1 cut(s) | 5612 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3469, 5427 |
| Vha464I | CTTAAG | 2 cut(s) | 1516, 2734 |
| VspI | ATTAAT | 5 cut(s) | 1383, 1785, 3545, 4050, 4911 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4411 |
| XbaI | TCTAGA | 2 cut(s) | 1549, 4007 |
| XceI | RCATGY | 8 cut(s) | 338, 859, 1096, 1406, 2430, 2806, 3620, 5138 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1095 |
| XhoI | CTCGAG | 1 cut(s) | 5438 |
| XmaI | CCCGGG | 1 cut(s) | 5775 |
| XmaJI | CCTAGG | 1 cut(s) | 182 |
| XmnI | GAANNNNTTC | 3 cut(s) | 585, 1034, 2414 |
| ZrmI | AGTACT | 3 cut(s) | 668, 2527, 4226 |
| Zsp2I | ATGCAT | 5 cut(s) | 1036, 2347, 2653, 3305, 4390 |