protein kinase activity
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1444, 1942 |
| Acc36I | ACCTGC | 4 cut(s) | 1153, 1444, 1713, 1942 |
| AccB1I | GGYRCC | 2 cut(s) | 529, 2413 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 198, 2568 |
| AccBSI | CCGCTC | 1 cut(s) | 1801 |
| AccII | CGCG | 2 cut(s) | 305, 1201 |
| AccIII | TCCGGA | 2 cut(s) | 658, 2789 |
| AciI | CCGC | 9 cut(s) | 227, 303, 305, 627, 731, 1199, 1625, 1799, 1976 |
| AclI | AACGTT | 1 cut(s) | 2090 |
| AclWI | GGATC | 2 cut(s) | 386, 1067 |
| AcoI | YGGCCR | 6 cut(s) | 270, 1899, 2511, 2559, 2577, 3093 |
| AcsI | RAATTY | 7 cut(s) | 329, 1117, 1403, 1675, 2102, 2147, 2207 |
| AcuI | CTGAAG | 1 cut(s) | 195 |
| AfaI | GTAC | 5 cut(s) | 371, 967, 2421, 2456, 3049 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 198, 708, 1169, 1469, 1530, 1605, 2568, 2586, 2892 |
| AflIII | ACRYGT | 1 cut(s) | 1560 |
| AgeI | ACCGGT | 1 cut(s) | 2764 |
| AjnI | CCWGG | 2 cut(s) | 1096, 1189 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2356, 2388 |
| AluBI | AGCT | 9 cut(s) | 69, 253, 348, 667, 1358, 1852, 2428, 2824, 2878 |
| AluI | AGCT | 9 cut(s) | 69, 253, 348, 667, 1358, 1852, 2428, 2824, 2878 |
| Alw21I | GWGCWC | 2 cut(s) | 793, 2553 |
| Alw26I | GTCTC | 9 cut(s) | 918, 983, 1101, 1375, 2463, 2471, 2500, 2672, 3388 |
| AlwI | GGATC | 2 cut(s) | 386, 1067 |
| Ama87I | CYCGRG | 2 cut(s) | 533, 2649 |
| Aor13HI | TCCGGA | 2 cut(s) | 658, 2789 |
| ApeKI | GCWGC | 5 cut(s) | 278, 308, 764, 1627, 2318 |
| ApoI | RAATTY | 7 cut(s) | 329, 1117, 1403, 1675, 2102, 2147, 2207 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 95, 127 |
| AseI | ATTAAT | 1 cut(s) | 1004 |
| AsiGI | ACCGGT | 1 cut(s) | 2764 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 584, 654, 3433 |
| AspLEI | GCGC | 4 cut(s) | 1297, 2203, 2664, 3007 |
| AspS9I | GGNCC | 6 cut(s) | 537, 691, 833, 1891, 2043, 2899 |
| AsuC2I | CCSGG | 2 cut(s) | 534, 535 |
| AsuHPI | GGTGA | 9 cut(s) | 119, 1378, 1468, 1621, 1966, 1998, 2754, 2815, 3194 |
| AsuII | TTCGAA | 2 cut(s) | 333, 1476 |
| AvaI | CYCGRG | 2 cut(s) | 533, 2649 |
| AvaII | GGWCC | 3 cut(s) | 537, 1891, 2899 |
| AxyI | CCTNAGG | 3 cut(s) | 262, 1662, 2154 |
| BaeGI | GKGCMC | 1 cut(s) | 1713 |
| BalI | TGGCCA | 1 cut(s) | 272 |
| BanI | GGYRCC | 2 cut(s) | 529, 2413 |
| BauI | CACGAG | 1 cut(s) | 908 |
| BbsI | GAAGAC | 2 cut(s) | 2060, 2452 |
| Bbv12I | GWGCWC | 2 cut(s) | 793, 2553 |
| BbvI | GCAGC | 5 cut(s) | 290, 295, 776, 1639, 2305 |
| BceAI | ACGGC | 7 cut(s) | 1519, 2267, 2526, 2574, 2649, 2899, 3365 |
| BciT130I | CCWGG | 2 cut(s) | 1098, 1191 |
| BciVI | GTATCC | 2 cut(s) | 2224, 2849 |
| BclI | TGATCA | 1 cut(s) | 2923 |
| BcnI | CCSGG | 2 cut(s) | 534, 535 |
| BcoDI | GTCTC | 9 cut(s) | 918, 983, 1101, 1375, 2463, 2471, 2500, 2672, 3388 |
| BfaI | CTAG | 5 cut(s) | 162, 1719, 2289, 2627, 3299 |
| BfoI | RGCGCY | 2 cut(s) | 2665, 3008 |
| BfuAI | ACCTGC | 4 cut(s) | 1153, 1444, 1713, 1942 |
| BfuI | GTATCC | 2 cut(s) | 2224, 2849 |
| BglII | AGATCT | 2 cut(s) | 1907, 3362 |
| BisI | GCNGC | 7 cut(s) | 279, 306, 309, 765, 1625, 1628, 2319 |
| BlpI | GCTNAGC | 1 cut(s) | 2658 |
| BlsI | GCNGC | 7 cut(s) | 280, 307, 310, 766, 1626, 1629, 2320 |
| Bme1390I | CCNGG | 4 cut(s) | 534, 535, 1098, 1191 |
| Bme18I | GGWCC | 3 cut(s) | 537, 1891, 2899 |
| BmeT110I | CYCGRG | 2 cut(s) | 533, 2649 |
| BmgT120I | GGNCC | 6 cut(s) | 537, 691, 833, 1891, 2043, 2899 |
| BmiI | GGNNCC | 4 cut(s) | 531, 538, 1522, 2415 |
| BmrFI | CCNGG | 4 cut(s) | 534, 535, 1098, 1191 |
| BmrI | ACTGGG | 1 cut(s) | 1397 |
| BmsI | GCATC | 6 cut(s) | 412, 712, 988, 1123, 1798, 2623 |
| BmuI | ACTGGG | 1 cut(s) | 1397 |
| BpiI | GAAGAC | 2 cut(s) | 2060, 2452 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 77, 109 |
| BpmI | CTGGAG | 1 cut(s) | 3373 |
| Bpu10I | CCTNAGC | 1 cut(s) | 507 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2658 |
| Bpu14I | TTCGAA | 2 cut(s) | 333, 1476 |
| BpuEI | CTTGAG | 6 cut(s) | 392, 631, 1251, 1344, 2345, 2444 |
| BpuMI | CCSGG | 2 cut(s) | 534, 535 |
| Bsa29I | ATCGAT | 1 cut(s) | 1071 |
| BsaAI | YACGTR | 2 cut(s) | 1987, 2607 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1024, 1477, 2127 |
| BsaI | GGTCTC | 1 cut(s) | 1101 |
| BsaJI | CCNNGG | 7 cut(s) | 192, 222, 303, 373, 384, 533, 1529 |
| BsaWI | WCCGGW | 3 cut(s) | 658, 2764, 2789 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2513, 2543, 2784, 2814 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 198, 708, 1169, 1469, 1530, 1605, 2568, 2586, 2892 |
| Bse118I | RCCGGY | 2 cut(s) | 2764, 2945 |
| Bse1I | ACTGG | 2 cut(s) | 1392, 1894 |
| Bse21I | CCTNAGG | 3 cut(s) | 262, 1662, 2154 |
| Bse3DI | GCAATG | 5 cut(s) | 2021, 2330, 2480, 2777, 3091 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1024, 1477, 2127 |
| BseAI | TCCGGA | 2 cut(s) | 658, 2789 |
| BseBI | CCWGG | 2 cut(s) | 1098, 1191 |
| BseCI | ATCGAT | 1 cut(s) | 1071 |
| BseDI | CCNNGG | 7 cut(s) | 192, 222, 303, 373, 384, 533, 1529 |
| BseGI | GGATG | 6 cut(s) | 979, 983, 1025, 2573, 3016, 3169 |
| BseJI | GATNNNNATC | 3 cut(s) | 1024, 1477, 2127 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 198, 708, 1169, 1469, 1530, 1605, 2568, 2586, 2892 |
| BseMI | GCAATG | 5 cut(s) | 2021, 2330, 2480, 2777, 3091 |
| BseMII | CTCAG | 6 cut(s) | 276, 929, 1257, 2415, 2672, 2805 |
| BseNI | ACTGG | 2 cut(s) | 1392, 1894 |
| BseRI | GAGGAG | 9 cut(s) | 677, 1592, 1760, 2488, 2534, 2537, 2645, 3376, 3433 |
| BseSI | GKGCMC | 1 cut(s) | 1713 |
| BseXI | GCAGC | 5 cut(s) | 290, 295, 776, 1639, 2305 |
| BseYI | CCCAGC | 1 cut(s) | 1972 |
| BsgI | GTGCAG | 4 cut(s) | 1143, 1367, 1970, 2304 |
| Bsh1236I | CGCG | 2 cut(s) | 305, 1201 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1071 |
| BshNI | GGYRCC | 2 cut(s) | 529, 2413 |
| BshTI | ACCGGT | 1 cut(s) | 2764 |
| BshVI | ATCGAT | 1 cut(s) | 1071 |
| BsiEI | CGRYCG | 1 cut(s) | 1071 |
| BsiHKAI | GWGCWC | 2 cut(s) | 793, 2553 |
| BsiHKCI | CYCGRG | 2 cut(s) | 533, 2649 |
| BsiSI | CCGG | 7 cut(s) | 534, 659, 2765, 2790, 2946, 3008, 3092 |
| BslFI | GGGAC | 5 cut(s) | 150, 550, 1216, 1404, 1808 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 198, 708, 1169, 1469, 1530, 1605, 2568, 2586, 2892 |
| BsmAI | GTCTC | 9 cut(s) | 918, 983, 1101, 1375, 2463, 2471, 2500, 2672, 3388 |
| BsmBI | CGTCTC | 2 cut(s) | 2672, 3388 |
| BsmFI | GGGAC | 5 cut(s) | 150, 550, 1216, 1404, 1808 |
| BsmI | GAATGC | 2 cut(s) | 291, 2815 |
| Bso31I | GGTCTC | 1 cut(s) | 1101 |
| BsoBI | CYCGRG | 2 cut(s) | 533, 2649 |
| Bsp119I | TTCGAA | 2 cut(s) | 333, 1476 |
| Bsp1286I | GDGCHC | 3 cut(s) | 793, 1713, 2553 |
| Bsp13I | TCCGGA | 2 cut(s) | 658, 2789 |
| Bsp1407I | TGTACA | 1 cut(s) | 965 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2658 |
| Bsp19I | CCATGG | 3 cut(s) | 222, 373, 384 |
| BspACI | CCGC | 9 cut(s) | 227, 303, 305, 627, 731, 1199, 1625, 1799, 1976 |
| BspCNI | CTCAG | 6 cut(s) | 275, 928, 1256, 2414, 2671, 2806 |
| BspDI | ATCGAT | 1 cut(s) | 1071 |
| BspEI | TCCGGA | 2 cut(s) | 658, 2789 |
| BspFNI | CGCG | 2 cut(s) | 305, 1201 |
| BspHI | TCATGA | 1 cut(s) | 2049 |
| BspLI | GGNNCC | 4 cut(s) | 531, 538, 1522, 2415 |
| BspMI | ACCTGC | 4 cut(s) | 1153, 1444, 1713, 1942 |
| BspPI | GGATC | 2 cut(s) | 386, 1067 |
| BspT104I | TTCGAA | 2 cut(s) | 333, 1476 |
| BspT107I | GGYRCC | 2 cut(s) | 529, 2413 |
| BspTNI | GGTCTC | 1 cut(s) | 1101 |
| BsrBI | CCGCTC | 1 cut(s) | 1801 |
| BsrDI | GCAATG | 5 cut(s) | 2021, 2330, 2480, 2777, 3091 |
| BsrFI | RCCGGY | 2 cut(s) | 2764, 2945 |
| BsrGI | TGTACA | 1 cut(s) | 965 |
| BsrI | ACTGG | 2 cut(s) | 1392, 1894 |
| BssAI | RCCGGY | 2 cut(s) | 2764, 2945 |
| BssECI | CCNNGG | 7 cut(s) | 192, 222, 303, 373, 384, 533, 1529 |
| BssSI | CACGAG | 1 cut(s) | 908 |
| BssT1I | CCWWGG | 4 cut(s) | 222, 373, 384, 1529 |
| Bst2BI | CACGAG | 1 cut(s) | 908 |
| Bst2UI | CCWGG | 2 cut(s) | 1098, 1191 |
| Bst4CI | ACNGT | 7 cut(s) | 107, 541, 788, 1650, 2345, 2436, 2800 |
| Bst6I | CTCTTC | 6 cut(s) | 177, 557, 1373, 1548, 1569, 1862 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 788 |
| BstAUI | TGTACA | 1 cut(s) | 965 |
| BstBAI | YACGTR | 2 cut(s) | 1987, 2607 |
| BstBI | TTCGAA | 2 cut(s) | 333, 1476 |
| BstC8I | GCNNGC | 2 cut(s) | 2612, 3068 |
| BstDSI | CCRYGG | 5 cut(s) | 192, 222, 303, 373, 384 |
| BstF5I | GGATG | 6 cut(s) | 979, 983, 1025, 2573, 3016, 3169 |
| BstFNI | CGCG | 2 cut(s) | 305, 1201 |
| BstH2I | RGCGCY | 2 cut(s) | 2665, 3008 |
| BstHHI | GCGC | 4 cut(s) | 1297, 2203, 2664, 3007 |
| BstMAI | GTCTC | 9 cut(s) | 918, 983, 1101, 1375, 2463, 2471, 2500, 2672, 3388 |
| BstMCI | CGRYCG | 1 cut(s) | 1071 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 278, 737, 761, 788, 797, 1595, 2616 |
| BstNI | CCWGG | 2 cut(s) | 1098, 1191 |
| BstNSI | RCATGY | 6 cut(s) | 996, 1327, 1564, 2614, 3039, 3070 |
| BstSCI | CCNGG | 4 cut(s) | 532, 533, 1096, 1189 |
| BstSLI | GKGCMC | 1 cut(s) | 1713 |
| BstUI | CGCG | 2 cut(s) | 305, 1201 |
| BstV1I | GCAGC | 5 cut(s) | 290, 295, 776, 1639, 2305 |
| BstV2I | GAAGAC | 2 cut(s) | 2060, 2452 |
| BstX2I | RGATCY | 3 cut(s) | 391, 1907, 3362 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 229, 956 |
| BstYI | RGATCY | 3 cut(s) | 391, 1907, 3362 |
| Bsu15I | ATCGAT | 1 cut(s) | 1071 |
| Bsu36I | CCTNAGG | 3 cut(s) | 262, 1662, 2154 |
| BsuI | GTATCC | 2 cut(s) | 2224, 2849 |
| BsuTUI | ATCGAT | 1 cut(s) | 1071 |
| BtgI | CCRYGG | 5 cut(s) | 192, 222, 303, 373, 384 |
| BtgZI | GCGATG | 1 cut(s) | 2600 |
| BtsCI | GGATG | 6 cut(s) | 979, 983, 1025, 2573, 3016, 3169 |
| BtsIMutI | CAGTG | 4 cut(s) | 2341, 2409, 2805, 3178 |
| BveI | ACCTGC | 4 cut(s) | 1153, 1444, 1713, 1942 |
| Cac8I | GCNNGC | 2 cut(s) | 2612, 3068 |
| CciI | TCATGA | 1 cut(s) | 2049 |
| CfoI | GCGC | 4 cut(s) | 1297, 2203, 2664, 3007 |
| Cfr10I | RCCGGY | 2 cut(s) | 2764, 2945 |
| Cfr13I | GGNCC | 6 cut(s) | 537, 691, 833, 1891, 2043, 2899 |
| Cfr42I | CCGCGG | 1 cut(s) | 306 |
| Cfr9I | CCCGGG | 1 cut(s) | 533 |
| ClaI | ATCGAT | 1 cut(s) | 1071 |
| Csp6I | GTAC | 5 cut(s) | 370, 966, 2420, 2455, 3048 |
| CspAI | ACCGGT | 1 cut(s) | 2764 |
| CviQI | GTAC | 5 cut(s) | 370, 966, 2420, 2455, 3048 |
| DraI | TTTAAA | 2 cut(s) | 2083, 2451 |
| EaeI | YGGCCR | 6 cut(s) | 270, 1899, 2511, 2559, 2577, 3093 |
| Eam1104I | CTCTTC | 6 cut(s) | 177, 557, 1373, 1548, 1569, 1862 |
| EarI | CTCTTC | 6 cut(s) | 177, 557, 1373, 1548, 1569, 1862 |
| Eco130I | CCWWGG | 4 cut(s) | 222, 373, 384, 1529 |
| Eco31I | GGTCTC | 1 cut(s) | 1101 |
| Eco47I | GGWCC | 3 cut(s) | 537, 1891, 2899 |
| Eco57I | CTGAAG | 1 cut(s) | 195 |
| Eco81I | CCTNAGG | 3 cut(s) | 262, 1662, 2154 |
| Eco88I | CYCGRG | 2 cut(s) | 533, 2649 |
| EcoO109I | RGGNCCY | 2 cut(s) | 691, 2043 |
| EcoRI | GAATTC | 2 cut(s) | 329, 1403 |
| EcoRII | CCWGG | 2 cut(s) | 1096, 1189 |
| EcoT14I | CCWWGG | 4 cut(s) | 222, 373, 384, 1529 |
| EcoT22I | ATGCAT | 1 cut(s) | 2616 |
| ErhI | CCWWGG | 4 cut(s) | 222, 373, 384, 1529 |
| Esp3I | CGTCTC | 2 cut(s) | 2672, 3388 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 332, 364, 554, 586, 2444, 2476, 2888, 2920 |
| FaqI | GGGAC | 5 cut(s) | 150, 550, 1216, 1404, 1808 |
| FauI | CCCGC | 3 cut(s) | 310, 724, 1206 |
| FbaI | TGATCA | 1 cut(s) | 2923 |
| Fnu4HI | GCNGC | 7 cut(s) | 279, 306, 309, 765, 1625, 1628, 2319 |
| FokI | GGATG | 6 cut(s) | 966, 970, 1032, 2580, 3023, 3176 |
| Fsp4HI | GCNGC | 7 cut(s) | 279, 306, 309, 765, 1625, 1628, 2319 |
| FspBI | CTAG | 5 cut(s) | 162, 1719, 2289, 2627, 3299 |
| GlaI | GCGC | 4 cut(s) | 1296, 2202, 2663, 3006 |
| GluI | GCNGC | 7 cut(s) | 279, 306, 309, 765, 1625, 1628, 2319 |
| GsaI | CCCAGC | 1 cut(s) | 1976 |
| GsuI | CTGGAG | 1 cut(s) | 3373 |
| HaeII | RGCGCY | 2 cut(s) | 2665, 3008 |
| HapII | CCGG | 7 cut(s) | 534, 659, 2765, 2790, 2946, 3008, 3092 |
| HhaI | GCGC | 4 cut(s) | 1297, 2203, 2664, 3007 |
| Hin6I | GCGC | 4 cut(s) | 1295, 2201, 2662, 3005 |
| HinP1I | GCGC | 4 cut(s) | 1295, 2201, 2662, 3005 |
| HincII | GTYRAC | 2 cut(s) | 1792, 2094 |
| HindII | GTYRAC | 2 cut(s) | 1792, 2094 |
| HindIII | AAGCTT | 1 cut(s) | 346 |
| HpaI | GTTAAC | 1 cut(s) | 2094 |
| HpaII | CCGG | 7 cut(s) | 534, 659, 2765, 2790, 2946, 3008, 3092 |
| HphI | GGTGA | 9 cut(s) | 119, 1378, 1468, 1621, 1966, 1998, 2754, 2815, 3194 |
| Hpy166II | GTNNAC | 4 cut(s) | 748, 966, 1792, 2094 |
| Hpy8I | GTNNAC | 4 cut(s) | 748, 966, 1792, 2094 |
| Hpy99I | CGWCG | 2 cut(s) | 1069, 3066 |
| HpyCH4III | ACNGT | 7 cut(s) | 107, 541, 788, 1650, 2345, 2436, 2800 |
| HpyCH4IV | ACGT | 6 cut(s) | 1707, 1986, 2090, 2457, 2606, 3098 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 278, 737, 761, 788, 797, 1595, 2616 |
| HpySE526I | ACGT | 6 cut(s) | 1707, 1986, 2090, 2457, 2606, 3098 |
| HspAI | GCGC | 4 cut(s) | 1295, 2201, 2662, 3005 |
| Kpn2I | TCCGGA | 2 cut(s) | 658, 2789 |
| Ksp22I | TGATCA | 1 cut(s) | 2923 |
| KspAI | GTTAAC | 1 cut(s) | 2094 |
| KspI | CCGCGG | 1 cut(s) | 306 |
| LmnI | GCTCC | 3 cut(s) | 664, 1806, 3094 |
| Lsp1109I | GCAGC | 5 cut(s) | 290, 295, 776, 1639, 2305 |
| LweI | GCATC | 6 cut(s) | 412, 712, 988, 1123, 1798, 2623 |
| MaeI | CTAG | 5 cut(s) | 162, 1719, 2289, 2627, 3299 |
| MaeII | ACGT | 6 cut(s) | 1707, 1986, 2090, 2457, 2606, 3098 |
| MaeIII | GTNAC | 7 cut(s) | 541, 882, 1437, 1456, 2760, 2794, 3269 |
| MbiI | CCGCTC | 1 cut(s) | 1801 |
| MfeI | CAATTG | 3 cut(s) | 887, 1277, 2247 |
| MflI | RGATCY | 3 cut(s) | 391, 1907, 3362 |
| MhlI | GDGCHC | 3 cut(s) | 793, 1713, 2553 |
| MlsI | TGGCCA | 1 cut(s) | 272 |
| MluNI | TGGCCA | 1 cut(s) | 272 |
| MlyI | GAGTC | 3 cut(s) | 158, 1453, 2336 |
| MmeI | TCCRAC | 7 cut(s) | 120, 658, 799, 1082, 1239, 1498, 1677 |
| Mox20I | TGGCCA | 1 cut(s) | 272 |
| Mph1103I | ATGCAT | 1 cut(s) | 2616 |
| MroI | TCCGGA | 2 cut(s) | 658, 2789 |
| MroXI | GAANNNNTTC | 3 cut(s) | 584, 654, 3433 |
| MscI | TGGCCA | 1 cut(s) | 272 |
| MslI | CAYNNNNRTG | 2 cut(s) | 227, 467 |
| Msp20I | TGGCCA | 1 cut(s) | 272 |
| MspA1I | CMGCKG | 2 cut(s) | 305, 1976 |
| MspI | CCGG | 7 cut(s) | 534, 659, 2765, 2790, 2946, 3008, 3092 |
| MspR9I | CCNGG | 4 cut(s) | 534, 535, 1098, 1191 |
| MunI | CAATTG | 3 cut(s) | 887, 1277, 2247 |
| Mva1269I | GAATGC | 2 cut(s) | 291, 2815 |
| MvaI | CCWGG | 2 cut(s) | 1098, 1191 |
| MvnI | CGCG | 2 cut(s) | 305, 1201 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 278, 737, 761, 788, 797, 1595, 2616 |
| NciI | CCSGG | 2 cut(s) | 534, 535 |
| NcoI | CCATGG | 3 cut(s) | 222, 373, 384 |
| NlaIV | GGNNCC | 4 cut(s) | 531, 538, 1522, 2415 |
| NmeAIII | GCCGAG | 1 cut(s) | 2332 |
| NmuCI | GTSAC | 5 cut(s) | 882, 1456, 2760, 2794, 3269 |
| NsiI | ATGCAT | 1 cut(s) | 2616 |
| NspI | RCATGY | 6 cut(s) | 996, 1327, 1564, 2614, 3039, 3070 |
| NspV | TTCGAA | 2 cut(s) | 333, 1476 |
| PaeI | GCATGC | 2 cut(s) | 2614, 3070 |
| PaeR7I | CTCGAG | 1 cut(s) | 2649 |
| PagI | TCATGA | 1 cut(s) | 2049 |
| PaqCI | CACCTGC | 2 cut(s) | 1444, 1942 |
| PciI | ACATGT | 1 cut(s) | 1560 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 111 |
| PctI | GAATGC | 2 cut(s) | 291, 2815 |
| PdmI | GAANNNNTTC | 3 cut(s) | 584, 654, 3433 |
| PflFI | GACNNNGTC | 1 cut(s) | 1684 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 198, 2568 |
| PinAI | ACCGGT | 1 cut(s) | 2764 |
| PkrI | GCNGC | 7 cut(s) | 280, 307, 310, 766, 1626, 1629, 2320 |
| Ple19I | CGATCG | 1 cut(s) | 1071 |
| PleI | GAGTC | 3 cut(s) | 157, 1453, 2335 |
| PpsI | GAGTC | 3 cut(s) | 157, 1453, 2335 |
| Ppu21I | YACGTR | 2 cut(s) | 1987, 2607 |
| PscI | ACATGT | 1 cut(s) | 1560 |
| PshBI | ATTAAT | 1 cut(s) | 1004 |
| Psp1406I | AACGTT | 1 cut(s) | 2090 |
| Psp6I | CCWGG | 2 cut(s) | 1096, 1189 |
| PspFI | CCCAGC | 1 cut(s) | 1972 |
| PspGI | CCWGG | 2 cut(s) | 1096, 1189 |
| PspN4I | GGNNCC | 4 cut(s) | 531, 538, 1522, 2415 |
| PspPI | GGNCC | 6 cut(s) | 537, 691, 833, 1891, 2043, 2899 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1823, 1855 |
| PsuI | RGATCY | 3 cut(s) | 391, 1907, 3362 |
| PsyI | GACNNNGTC | 1 cut(s) | 1684 |
| PvuI | CGATCG | 1 cut(s) | 1071 |
| RsaI | GTAC | 5 cut(s) | 371, 967, 2421, 2456, 3049 |
| RsaNI | GTAC | 5 cut(s) | 370, 966, 2420, 2455, 3048 |
| RseI | CAYNNNNRTG | 2 cut(s) | 227, 467 |
| SacII | CCGCGG | 1 cut(s) | 306 |
| SatI | GCNGC | 7 cut(s) | 279, 306, 309, 765, 1625, 1628, 2319 |
| Sau96I | GGNCC | 6 cut(s) | 537, 691, 833, 1891, 2043, 2899 |
| SchI | GAGTC | 3 cut(s) | 158, 1453, 2336 |
| ScrFI | CCNGG | 4 cut(s) | 534, 535, 1098, 1191 |
| SduI | GDGCHC | 3 cut(s) | 793, 1713, 2553 |
| SfaNI | GCATC | 6 cut(s) | 412, 712, 988, 1123, 1798, 2623 |
| Sfr274I | CTCGAG | 1 cut(s) | 2649 |
| Sfr303I | CCGCGG | 1 cut(s) | 306 |
| SfuI | TTCGAA | 2 cut(s) | 333, 1476 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2764 |
| SgrBI | CCGCGG | 1 cut(s) | 306 |
| SinI | GGWCC | 3 cut(s) | 537, 1891, 2899 |
| SlaI | CTCGAG | 1 cut(s) | 2649 |
| SmaI | CCCGGG | 1 cut(s) | 535 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 227, 467 |
| SmlI | CTYRAG | 7 cut(s) | 407, 610, 1266, 1359, 2324, 2423, 2649 |
| SmoI | CTYRAG | 7 cut(s) | 407, 610, 1266, 1359, 2324, 2423, 2649 |
| SphI | GCATGC | 2 cut(s) | 2614, 3070 |
| SsiI | CCGC | 9 cut(s) | 227, 303, 305, 627, 731, 1199, 1625, 1799, 1976 |
| SspMI | CTAG | 5 cut(s) | 162, 1719, 2289, 2627, 3299 |
| StyD4I | CCNGG | 4 cut(s) | 532, 533, 1096, 1189 |
| StyI | CCWWGG | 4 cut(s) | 222, 373, 384, 1529 |
| TaaI | ACNGT | 7 cut(s) | 107, 541, 788, 1650, 2345, 2436, 2800 |
| TaiI | ACGT | 6 cut(s) | 1710, 1989, 2093, 2460, 2609, 3101 |
| TaqII | GACCGA | 1 cut(s) | 338 |
| TatI | WGTACW | 1 cut(s) | 965 |
| TauI | GCSGC | 2 cut(s) | 308, 1627 |
| TscAI | CASTG | 4 cut(s) | 2348, 2409, 2805, 3178 |
| TseFI | GTSAC | 5 cut(s) | 882, 1456, 2760, 2794, 3269 |
| TseI | GCWGC | 5 cut(s) | 278, 308, 764, 1627, 2318 |
| Tsp45I | GTSAC | 5 cut(s) | 882, 1456, 2760, 2794, 3269 |
| TspGWI | ACGGA | 1 cut(s) | 209 |
| TspMI | CCCGGG | 1 cut(s) | 533 |
| TspRI | CASTG | 4 cut(s) | 2348, 2409, 2805, 3178 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1684 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 198, 2568 |
| VpaK11BI | GGWCC | 3 cut(s) | 537, 1891, 2899 |
| VspI | ATTAAT | 1 cut(s) | 1004 |
| XapI | RAATTY | 7 cut(s) | 329, 1117, 1403, 1675, 2102, 2147, 2207 |
| XbaI | TCTAGA | 1 cut(s) | 2626 |
| XceI | RCATGY | 6 cut(s) | 996, 1327, 1564, 2614, 3039, 3070 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1122 |
| XhoI | CTCGAG | 1 cut(s) | 2649 |
| XmaI | CCCGGG | 1 cut(s) | 533 |
| XmnI | GAANNNNTTC | 3 cut(s) | 584, 654, 3433 |
| XspI | CTAG | 5 cut(s) | 162, 1719, 2289, 2627, 3299 |
| Zsp2I | ATGCAT | 1 cut(s) | 2616 |