Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 427 - 582 | 1.4e-28 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 647 - 744 | 1.2e-32 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 672 - 774 | 3.1e-36 | RNase H-like domain found in reverse transcriptase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1425 |
| Acc36I | ACCTGC | 3 cut(s) | 1198, 1841, 1896 |
| AccBSI | CCGCTC | 1 cut(s) | 973 |
| AccII | CGCG | 2 cut(s) | 97, 2685 |
| AccIII | TCCGGA | 2 cut(s) | 1444, 2437 |
| AclI | AACGTT | 2 cut(s) | 1535, 2080 |
| AclWI | GGATC | 7 cut(s) | 38, 578, 1344, 1458, 2418, 2579, 2619 |
| AcoI | YGGCCR | 2 cut(s) | 177, 2662 |
| AcsI | RAATTY | 5 cut(s) | 628, 1010, 2017, 2195, 2697 |
| AcvI | CACGTG | 1 cut(s) | 1274 |
| AcyI | GRCGYC | 1 cut(s) | 2043 |
| AfaI | GTAC | 7 cut(s) | 61, 187, 417, 1794, 2218, 2591, 3246 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1207, 1905 |
| AflII | CTTAAG | 2 cut(s) | 275, 425 |
| AflIII | ACRYGT | 5 cut(s) | 490, 503, 1271, 1273, 2098 |
| AjnI | CCWGG | 2 cut(s) | 691, 2664 |
| AleI | CACNNNNGTG | 2 cut(s) | 1238, 1817 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3030, 3062 |
| Alw21I | GWGCWC | 1 cut(s) | 479 |
| Alw26I | GTCTC | 3 cut(s) | 86, 765, 2737 |
| AlwI | GGATC | 7 cut(s) | 38, 578, 1344, 1458, 2418, 2579, 2619 |
| Aor13HI | TCCGGA | 2 cut(s) | 1444, 2437 |
| AoxI | GGCC | 4 cut(s) | 177, 572, 2074, 2662 |
| ApeKI | GCWGC | 4 cut(s) | 317, 2246, 2446, 2920 |
| ApoI | RAATTY | 5 cut(s) | 628, 1010, 2017, 2195, 2697 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 945, 2433 |
| AspLEI | GCGC | 2 cut(s) | 454, 3093 |
| AspS9I | GGNCC | 2 cut(s) | 2074, 3107 |
| AsuC2I | CCSGG | 1 cut(s) | 3081 |
| AsuII | TTCGAA | 2 cut(s) | 76, 949 |
| AvaII | GGWCC | 1 cut(s) | 3107 |
| BaeGI | GKGCMC | 1 cut(s) | 1743 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2208, 2241 |
| BalI | TGGCCA | 2 cut(s) | 179, 2664 |
| BanII | GRGCYC | 1 cut(s) | 1202 |
| BbrPI | CACGTG | 1 cut(s) | 1274 |
| BbsI | GAAGAC | 2 cut(s) | 177, 1257 |
| Bbv12I | GWGCWC | 1 cut(s) | 479 |
| BbvI | GCAGC | 4 cut(s) | 329, 2258, 2458, 2907 |
| BccI | CCATC | 7 cut(s) | 130, 254, 511, 517, 1114, 1184, 1403 |
| BceAI | ACGGC | 1 cut(s) | 120 |
| BciT130I | CCWGG | 2 cut(s) | 693, 2666 |
| BclI | TGATCA | 4 cut(s) | 619, 1360, 1720, 3012 |
| BcnI | CCSGG | 1 cut(s) | 3081 |
| BcoDI | GTCTC | 3 cut(s) | 86, 765, 2737 |
| BfaI | CTAG | 7 cut(s) | 53, 708, 860, 1154, 1262, 1755, 2721 |
| BfmI | CTRYAG | 3 cut(s) | 1858, 2154, 2921 |
| BfoI | RGCGCY | 1 cut(s) | 455 |
| BfrI | CTTAAG | 2 cut(s) | 275, 425 |
| BfuAI | ACCTGC | 3 cut(s) | 1198, 1841, 1896 |
| BglII | AGATCT | 3 cut(s) | 933, 1786, 3204 |
| BisI | GCNGC | 4 cut(s) | 318, 2247, 2447, 2921 |
| BlsI | GCNGC | 4 cut(s) | 319, 2248, 2448, 2922 |
| Bme1390I | CCNGG | 3 cut(s) | 693, 2666, 3081 |
| Bme18I | GGWCC | 1 cut(s) | 3107 |
| BmgT120I | GGNCC | 2 cut(s) | 2074, 3107 |
| BmiI | GGNNCC | 1 cut(s) | 2472 |
| BmrFI | CCNGG | 3 cut(s) | 693, 2666, 3081 |
| BmrI | ACTGGG | 2 cut(s) | 1196, 1293 |
| BmuI | ACTGGG | 2 cut(s) | 1196, 1293 |
| BpiI | GAAGAC | 2 cut(s) | 177, 1257 |
| BpmI | CTGGAG | 2 cut(s) | 1992, 2870 |
| Bpu10I | CCTNAGC | 1 cut(s) | 48 |
| Bpu14I | TTCGAA | 2 cut(s) | 76, 949 |
| BpuMI | CCSGG | 1 cut(s) | 3081 |
| BsaAI | YACGTR | 1 cut(s) | 1274 |
| BsaHI | GRCGYC | 1 cut(s) | 2043 |
| BsaJI | CCNNGG | 2 cut(s) | 2285, 2474 |
| BsaWI | WCCGGW | 4 cut(s) | 1444, 1497, 2437, 2839 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2462, 2492 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1207, 1905 |
| Bse118I | RCCGGY | 1 cut(s) | 3167 |
| Bse1I | ACTGG | 3 cut(s) | 1202, 1288, 3260 |
| BseAI | TCCGGA | 2 cut(s) | 1444, 2437 |
| BseBI | CCWGG | 2 cut(s) | 693, 2666 |
| BseDI | CCNNGG | 2 cut(s) | 2285, 2474 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1207, 1905 |
| BseMII | CTCAG | 4 cut(s) | 27, 39, 1194, 2150 |
| BseNI | ACTGG | 3 cut(s) | 1202, 1288, 3260 |
| BseRI | GAGGAG | 4 cut(s) | 723, 726, 1995, 2420 |
| BseSI | GKGCMC | 1 cut(s) | 1743 |
| BseXI | GCAGC | 4 cut(s) | 329, 2258, 2458, 2907 |
| BsgI | GTGCAG | 1 cut(s) | 1226 |
| Bsh1236I | CGCG | 2 cut(s) | 97, 2685 |
| BshFI | GGCC | 4 cut(s) | 179, 574, 2076, 2664 |
| BsiHKAI | GWGCWC | 1 cut(s) | 479 |
| BsiSI | CCGG | 6 cut(s) | 1445, 1498, 2438, 2840, 3080, 3168 |
| BslFI | GGGAC | 3 cut(s) | 501, 980, 1498 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1207, 1905 |
| BsmAI | GTCTC | 3 cut(s) | 86, 765, 2737 |
| BsmBI | CGTCTC | 1 cut(s) | 86 |
| BsmFI | GGGAC | 3 cut(s) | 501, 980, 1498 |
| BsmI | GAATGC | 3 cut(s) | 332, 1084, 1952 |
| BsnI | GGCC | 4 cut(s) | 179, 574, 2076, 2664 |
| Bsp119I | TTCGAA | 2 cut(s) | 76, 949 |
| Bsp1286I | GDGCHC | 3 cut(s) | 479, 1202, 1743 |
| Bsp13I | TCCGGA | 2 cut(s) | 1444, 2437 |
| BspANI | GGCC | 4 cut(s) | 179, 574, 2076, 2664 |
| BspCNI | CTCAG | 4 cut(s) | 28, 40, 1193, 2149 |
| BspEI | TCCGGA | 2 cut(s) | 1444, 2437 |
| BspFNI | CGCG | 2 cut(s) | 97, 2685 |
| BspHI | TCATGA | 3 cut(s) | 1116, 3001, 3253 |
| BspLI | GGNNCC | 1 cut(s) | 2472 |
| BspMAI | CTGCAG | 1 cut(s) | 2925 |
| BspMI | ACCTGC | 3 cut(s) | 1198, 1841, 1896 |
| BspPI | GGATC | 7 cut(s) | 38, 578, 1344, 1458, 2418, 2579, 2619 |
| BspT104I | TTCGAA | 2 cut(s) | 76, 949 |
| BspTI | CTTAAG | 2 cut(s) | 275, 425 |
| BsrBI | CCGCTC | 1 cut(s) | 973 |
| BsrFI | RCCGGY | 1 cut(s) | 3167 |
| BsrI | ACTGG | 3 cut(s) | 1202, 1288, 3260 |
| BssAI | RCCGGY | 1 cut(s) | 3167 |
| BssECI | CCNNGG | 2 cut(s) | 2285, 2474 |
| BssNI | GRCGYC | 1 cut(s) | 2043 |
| BssT1I | CCWWGG | 1 cut(s) | 2474 |
| Bst2UI | CCWGG | 2 cut(s) | 693, 2666 |
| Bst4CI | ACNGT | 7 cut(s) | 64, 85, 185, 420, 1063, 1237, 2713 |
| Bst6I | CTCTTC | 3 cut(s) | 144, 153, 3059 |
| BstACI | GRCGYC | 1 cut(s) | 2043 |
| BstAFI | CTTAAG | 2 cut(s) | 275, 425 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 474 |
| BstBAI | YACGTR | 1 cut(s) | 1274 |
| BstBI | TTCGAA | 2 cut(s) | 76, 949 |
| BstC8I | GCNNGC | 3 cut(s) | 99, 540, 2553 |
| BstDEI | CTNAG | 8 cut(s) | 36, 48, 976, 1180, 1639, 2136, 2458, 2556 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1903 |
| BstFNI | CGCG | 2 cut(s) | 97, 2685 |
| BstH2I | RGCGCY | 1 cut(s) | 455 |
| BstHHI | GCGC | 2 cut(s) | 454, 3093 |
| BstMAI | GTCTC | 3 cut(s) | 86, 765, 2737 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 474, 571, 785, 2561, 2762, 2867, 2917 |
| BstNI | CCWGG | 2 cut(s) | 693, 2666 |
| BstNSI | RCATGY | 3 cut(s) | 494, 507, 1850 |
| BstSCI | CCNGG | 3 cut(s) | 691, 2664, 3079 |
| BstSFI | CTRYAG | 3 cut(s) | 1858, 2154, 2921 |
| BstSLI | GKGCMC | 1 cut(s) | 1743 |
| BstUI | CGCG | 2 cut(s) | 97, 2685 |
| BstV1I | GCAGC | 4 cut(s) | 329, 2258, 2458, 2907 |
| BstV2I | GAAGAC | 2 cut(s) | 177, 1257 |
| BstX2I | RGATCY | 4 cut(s) | 933, 1786, 2410, 3204 |
| BstYI | RGATCY | 4 cut(s) | 933, 1786, 2410, 3204 |
| BsuRI | GGCC | 4 cut(s) | 179, 574, 2076, 2664 |
| BtgZI | GCGATG | 1 cut(s) | 2893 |
| BtsI | GCAGTG | 1 cut(s) | 475 |
| BtsIMutI | CAGTG | 3 cut(s) | 475, 1209, 3267 |
| BveI | ACCTGC | 3 cut(s) | 1198, 1841, 1896 |
| Cac8I | GCNNGC | 3 cut(s) | 99, 540, 2553 |
| CciI | TCATGA | 3 cut(s) | 1116, 3001, 3253 |
| CfoI | GCGC | 2 cut(s) | 454, 3093 |
| Cfr10I | RCCGGY | 1 cut(s) | 3167 |
| Cfr13I | GGNCC | 2 cut(s) | 2074, 3107 |
| CseI | GACGC | 4 cut(s) | 103, 421, 833, 2051 |
| Csp6I | GTAC | 7 cut(s) | 60, 186, 416, 1793, 2217, 2590, 3245 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 117, 152, 1268, 1303 |
| CviQI | GTAC | 7 cut(s) | 60, 186, 416, 1793, 2217, 2590, 3245 |
| DdeI | CTNAG | 8 cut(s) | 36, 48, 976, 1180, 1639, 2136, 2458, 2556 |
| DraI | TTTAAA | 2 cut(s) | 1692, 2085 |
| EaeI | YGGCCR | 2 cut(s) | 177, 2662 |
| Eam1104I | CTCTTC | 3 cut(s) | 144, 153, 3059 |
| EarI | CTCTTC | 3 cut(s) | 144, 153, 3059 |
| Eco130I | CCWWGG | 1 cut(s) | 2474 |
| Eco24I | GRGCYC | 1 cut(s) | 1202 |
| Eco32I | GATATC | 1 cut(s) | 2488 |
| Eco47I | GGWCC | 1 cut(s) | 3107 |
| Eco72I | CACGTG | 1 cut(s) | 1274 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1903 |
| EcoRII | CCWGG | 2 cut(s) | 691, 2664 |
| EcoRV | GATATC | 1 cut(s) | 2488 |
| EcoT14I | CCWWGG | 1 cut(s) | 2474 |
| EcoT22I | ATGCAT | 1 cut(s) | 2758 |
| EcoT38I | GRGCYC | 1 cut(s) | 1202 |
| ErhI | CCWWGG | 1 cut(s) | 2474 |
| Esp3I | CGTCTC | 1 cut(s) | 86 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 906, 938, 920, 952, 1325, 1357, 3010, 3042 |
| FaqI | GGGAC | 3 cut(s) | 501, 980, 1498 |
| FauI | CCCGC | 3 cut(s) | 692, 1284, 1353 |
| FbaI | TGATCA | 4 cut(s) | 619, 1360, 1720, 3012 |
| Fnu4HI | GCNGC | 4 cut(s) | 318, 2247, 2447, 2921 |
| FriOI | GRGCYC | 1 cut(s) | 1202 |
| Fsp4HI | GCNGC | 4 cut(s) | 318, 2247, 2447, 2921 |
| FspBI | CTAG | 7 cut(s) | 53, 708, 860, 1154, 1262, 1755, 2721 |
| GlaI | GCGC | 2 cut(s) | 453, 3092 |
| GluI | GCNGC | 4 cut(s) | 318, 2247, 2447, 2921 |
| GsuI | CTGGAG | 2 cut(s) | 1992, 2870 |
| HaeII | RGCGCY | 1 cut(s) | 455 |
| HaeIII | GGCC | 4 cut(s) | 179, 574, 2076, 2664 |
| HapII | CCGG | 6 cut(s) | 1445, 1498, 2438, 2840, 3080, 3168 |
| HgaI | GACGC | 4 cut(s) | 103, 421, 833, 2051 |
| HhaI | GCGC | 2 cut(s) | 454, 3093 |
| Hin1I | GRCGYC | 1 cut(s) | 2043 |
| Hin6I | GCGC | 2 cut(s) | 452, 3091 |
| HinP1I | GCGC | 2 cut(s) | 452, 3091 |
| HincII | GTYRAC | 3 cut(s) | 857, 1983, 2494 |
| HindII | GTYRAC | 3 cut(s) | 857, 1983, 2494 |
| HindIII | AAGCTT | 4 cut(s) | 1956, 2090, 2431, 2549 |
| HpaI | GTTAAC | 1 cut(s) | 1983 |
| HpaII | CCGG | 6 cut(s) | 1445, 1498, 2438, 2840, 3080, 3168 |
| Hpy166II | GTNNAC | 5 cut(s) | 857, 964, 1983, 2494, 3130 |
| Hpy8I | GTNNAC | 5 cut(s) | 857, 964, 1983, 2494, 3130 |
| Hpy99I | CGWCG | 1 cut(s) | 1104 |
| HpyCH4III | ACNGT | 7 cut(s) | 64, 85, 185, 420, 1063, 1237, 2713 |
| HpyCH4IV | ACGT | 8 cut(s) | 58, 1099, 1273, 1535, 1743, 1795, 2080, 2100 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 474, 571, 785, 2561, 2762, 2867, 2917 |
| HpyF3I | CTNAG | 8 cut(s) | 36, 48, 976, 1180, 1639, 2136, 2458, 2556 |
| HpySE526I | ACGT | 8 cut(s) | 58, 1099, 1273, 1535, 1743, 1795, 2080, 2100 |
| Hsp92I | GRCGYC | 1 cut(s) | 2043 |
| HspAI | GCGC | 2 cut(s) | 452, 3091 |
| Kpn2I | TCCGGA | 2 cut(s) | 1444, 2437 |
| Ksp22I | TGATCA | 4 cut(s) | 619, 1360, 1720, 3012 |
| KspAI | GTTAAC | 1 cut(s) | 1983 |
| Lsp1109I | GCAGC | 4 cut(s) | 329, 2258, 2458, 2907 |
| MaeI | CTAG | 7 cut(s) | 53, 708, 860, 1154, 1262, 1755, 2721 |
| MaeII | ACGT | 8 cut(s) | 58, 1099, 1273, 1535, 1743, 1795, 2080, 2100 |
| MaeIII | GTNAC | 7 cut(s) | 420, 1911, 2039, 2503, 2799, 2831, 3264 |
| MbiI | CCGCTC | 1 cut(s) | 973 |
| MfeI | CAATTG | 2 cut(s) | 2615, 2790 |
| MflI | RGATCY | 4 cut(s) | 933, 1786, 2410, 3204 |
| MhlI | GDGCHC | 3 cut(s) | 479, 1202, 1743 |
| MlsI | TGGCCA | 2 cut(s) | 179, 2664 |
| MluNI | TGGCCA | 2 cut(s) | 179, 2664 |
| MlyI | GAGTC | 5 cut(s) | 340, 862, 1509, 2116, 3192 |
| MmeI | TCCRAC | 2 cut(s) | 532, 2404 |
| Mox20I | TGGCCA | 2 cut(s) | 179, 2664 |
| Mph1103I | ATGCAT | 1 cut(s) | 2758 |
| MroI | TCCGGA | 2 cut(s) | 1444, 2437 |
| MroXI | GAANNNNTTC | 2 cut(s) | 945, 2433 |
| MscI | TGGCCA | 2 cut(s) | 179, 2664 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1238, 1817 |
| Msp20I | TGGCCA | 2 cut(s) | 179, 2664 |
| MspCI | CTTAAG | 2 cut(s) | 275, 425 |
| MspI | CCGG | 6 cut(s) | 1445, 1498, 2438, 2840, 3080, 3168 |
| MspR9I | CCNGG | 3 cut(s) | 693, 2666, 3081 |
| MssI | GTTTAAAC | 1 cut(s) | 2085 |
| MunI | CAATTG | 2 cut(s) | 2615, 2790 |
| Mva1269I | GAATGC | 3 cut(s) | 332, 1084, 1952 |
| MvaI | CCWGG | 2 cut(s) | 693, 2666 |
| MvnI | CGCG | 2 cut(s) | 97, 2685 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 474, 571, 785, 2561, 2762, 2867, 2917 |
| NciI | CCSGG | 1 cut(s) | 3081 |
| NlaIV | GGNNCC | 1 cut(s) | 2472 |
| NmuCI | GTSAC | 5 cut(s) | 420, 2039, 2799, 2831, 3264 |
| NsiI | ATGCAT | 1 cut(s) | 2758 |
| NspI | RCATGY | 3 cut(s) | 494, 507, 1850 |
| NspV | TTCGAA | 2 cut(s) | 76, 949 |
| OliI | CACNNNNGTG | 2 cut(s) | 1238, 1817 |
| PagI | TCATGA | 3 cut(s) | 1116, 3001, 3253 |
| PciI | ACATGT | 2 cut(s) | 490, 503 |
| PctI | GAATGC | 3 cut(s) | 332, 1084, 1952 |
| PdmI | GAANNNNTTC | 2 cut(s) | 945, 2433 |
| PfeI | GAWTC | 8 cut(s) | 267, 696, 835, 1108, 1622, 1866, 2716, 3151 |
| PkrI | GCNGC | 4 cut(s) | 319, 2248, 2448, 2922 |
| PleI | GAGTC | 5 cut(s) | 340, 861, 1509, 2116, 3192 |
| PmaCI | CACGTG | 1 cut(s) | 1274 |
| PmeI | GTTTAAAC | 1 cut(s) | 2085 |
| PmlI | CACGTG | 1 cut(s) | 1274 |
| PpsI | GAGTC | 5 cut(s) | 340, 861, 1509, 2116, 3192 |
| Ppu21I | YACGTR | 1 cut(s) | 1274 |
| PscI | ACATGT | 2 cut(s) | 490, 503 |
| PsiI | TTATAA | 1 cut(s) | 1425 |
| Psp1406I | AACGTT | 2 cut(s) | 1535, 2080 |
| Psp6I | CCWGG | 2 cut(s) | 691, 2664 |
| PspCI | CACGTG | 1 cut(s) | 1274 |
| PspGI | CCWGG | 2 cut(s) | 691, 2664 |
| PspN4I | GGNNCC | 1 cut(s) | 2472 |
| PspPI | GGNCC | 2 cut(s) | 2074, 3107 |
| PstI | CTGCAG | 1 cut(s) | 2925 |
| PsuI | RGATCY | 4 cut(s) | 933, 1786, 2410, 3204 |
| RsaI | GTAC | 7 cut(s) | 61, 187, 417, 1794, 2218, 2591, 3246 |
| RsaNI | GTAC | 7 cut(s) | 60, 186, 416, 1793, 2217, 2590, 3245 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1238, 1817 |
| SatI | GCNGC | 4 cut(s) | 318, 2247, 2447, 2921 |
| Sau96I | GGNCC | 2 cut(s) | 2074, 3107 |
| SchI | GAGTC | 5 cut(s) | 340, 862, 1509, 2116, 3192 |
| ScrFI | CCNGG | 3 cut(s) | 693, 2666, 3081 |
| SduI | GDGCHC | 3 cut(s) | 479, 1202, 1743 |
| SfcI | CTRYAG | 3 cut(s) | 1858, 2154, 2921 |
| SfuI | TTCGAA | 2 cut(s) | 76, 949 |
| SinI | GGWCC | 1 cut(s) | 3107 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1238, 1817 |
| SspMI | CTAG | 7 cut(s) | 53, 708, 860, 1154, 1262, 1755, 2721 |
| StyD4I | CCNGG | 3 cut(s) | 691, 2664, 3079 |
| StyI | CCWWGG | 1 cut(s) | 2474 |
| TaaI | ACNGT | 7 cut(s) | 64, 85, 185, 420, 1063, 1237, 2713 |
| TaiI | ACGT | 8 cut(s) | 61, 1102, 1276, 1538, 1746, 1798, 2083, 2103 |
| TatI | WGTACW | 1 cut(s) | 415 |
| TfiI | GAWTC | 8 cut(s) | 267, 696, 835, 1108, 1622, 1866, 2716, 3151 |
| TscAI | CASTG | 3 cut(s) | 475, 1209, 3267 |
| TseFI | GTSAC | 5 cut(s) | 420, 2039, 2799, 2831, 3264 |
| TseI | GCWGC | 4 cut(s) | 317, 2246, 2446, 2920 |
| Tsp45I | GTSAC | 5 cut(s) | 420, 2039, 2799, 2831, 3264 |
| TspGWI | ACGGA | 1 cut(s) | 2577 |
| TspRI | CASTG | 3 cut(s) | 475, 1209, 3267 |
| Vha464I | CTTAAG | 2 cut(s) | 275, 425 |
| VpaK11BI | GGWCC | 1 cut(s) | 3107 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1903 |
| XapI | RAATTY | 5 cut(s) | 628, 1010, 2017, 2195, 2697 |
| XceI | RCATGY | 3 cut(s) | 494, 507, 1850 |
| XmnI | GAANNNNTTC | 2 cut(s) | 945, 2433 |
| XspI | CTAG | 7 cut(s) | 53, 708, 860, 1154, 1262, 1755, 2721 |
| Zsp2I | ATGCAT | 1 cut(s) | 2758 |