RNA splicing
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RT_RNaseH_2 | PF17919 | 115 - 157 | 1.3e-10 | RNase H-like domain found in reverse transcriptase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 297 |
| Acc36I | ACCTGC | 1 cut(s) | 245 |
| AccB1I | GGYRCC | 1 cut(s) | 394 |
| AccI | GTMKAC | 1 cut(s) | 189 |
| AgsI | TTSAA | 5 cut(s) | 67, 80, 170, 320, 367 |
| AjnI | CCWGG | 1 cut(s) | 356 |
| ApeKI | GCWGC | 1 cut(s) | 298 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 46, 78 |
| AspLEI | GCGC | 1 cut(s) | 298 |
| AspS9I | GGNCC | 1 cut(s) | 420 |
| AsuHPI | GGTGA | 2 cut(s) | 35, 379 |
| AvaII | GGWCC | 1 cut(s) | 420 |
| BanI | GGYRCC | 1 cut(s) | 394 |
| BbvI | GCAGC | 1 cut(s) | 310 |
| BceAI | ACGGC | 1 cut(s) | 408 |
| BciT130I | CCWGG | 1 cut(s) | 358 |
| BclI | TGATCA | 1 cut(s) | 34 |
| BfaI | CTAG | 1 cut(s) | 140 |
| BfuAI | ACCTGC | 1 cut(s) | 245 |
| BisI | GCNGC | 1 cut(s) | 299 |
| BlsI | GCNGC | 1 cut(s) | 300 |
| Bme1390I | CCNGG | 1 cut(s) | 358 |
| Bme18I | GGWCC | 1 cut(s) | 420 |
| BmgT120I | GGNCC | 1 cut(s) | 420 |
| BmiI | GGNNCC | 1 cut(s) | 396 |
| BmrFI | CCNGG | 1 cut(s) | 358 |
| BmsI | GCATC | 3 cut(s) | 337, 436, 458 |
| BpmI | CTGGAG | 1 cut(s) | 340 |
| BsaJI | CCNNGG | 3 cut(s) | 357, 390, 463 |
| BseBI | CCWGG | 1 cut(s) | 358 |
| BseDI | CCNNGG | 3 cut(s) | 357, 390, 463 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseXI | GCAGC | 1 cut(s) | 310 |
| BshNI | GGYRCC | 1 cut(s) | 394 |
| BsmI | GAATGC | 1 cut(s) | 362 |
| Bsp143I | GATC | 1 cut(s) | 34 |
| BspLI | GGNNCC | 1 cut(s) | 396 |
| BspMI | ACCTGC | 1 cut(s) | 245 |
| BspT107I | GGYRCC | 1 cut(s) | 394 |
| BssECI | CCNNGG | 3 cut(s) | 357, 390, 463 |
| BssMI | GATC | 1 cut(s) | 34 |
| BssT1I | CCWWGG | 1 cut(s) | 463 |
| Bst2UI | CCWGG | 1 cut(s) | 358 |
| BstC8I | GCNNGC | 1 cut(s) | 352 |
| BstDEI | CTNAG | 1 cut(s) | 183 |
| BstDSI | CCRYGG | 1 cut(s) | 390 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstHHI | GCGC | 1 cut(s) | 298 |
| BstKTI | GATC | 1 cut(s) | 37 |
| BstMBI | GATC | 1 cut(s) | 34 |
| BstNI | CCWGG | 1 cut(s) | 358 |
| BstNSI | RCATGY | 1 cut(s) | 354 |
| BstSCI | CCNGG | 1 cut(s) | 356 |
| BstV1I | GCAGC | 1 cut(s) | 310 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 417 |
| BtgI | CCRYGG | 1 cut(s) | 390 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| BveI | ACCTGC | 1 cut(s) | 245 |
| Cac8I | GCNNGC | 1 cut(s) | 352 |
| CfoI | GCGC | 1 cut(s) | 298 |
| Cfr13I | GGNCC | 1 cut(s) | 420 |
| CviAII | CATG | 2 cut(s) | 118, 351 |
| CviJI | RGCY | 2 cut(s) | 301, 383 |
| CviKI_1 | RGCY | 2 cut(s) | 301, 383 |
| DdeI | CTNAG | 1 cut(s) | 183 |
| DpnI | GATC | 1 cut(s) | 36 |
| DpnII | GATC | 1 cut(s) | 34 |
| DraI | TTTAAA | 2 cut(s) | 45, 490 |
| Eco130I | CCWWGG | 1 cut(s) | 463 |
| Eco47I | GGWCC | 1 cut(s) | 420 |
| EcoRII | CCWGG | 1 cut(s) | 356 |
| EcoT14I | CCWWGG | 1 cut(s) | 463 |
| EcoT22I | ATGCAT | 2 cut(s) | 352, 451 |
| ErhI | CCWWGG | 1 cut(s) | 463 |
| FaeI | CATG | 2 cut(s) | 121, 354 |
| FaiI | YATR | 8 cut(s) | 119, 147, 264, 275, 307, 352, 459, 475 |
| FatI | CATG | 2 cut(s) | 117, 350 |
| FbaI | TGATCA | 1 cut(s) | 34 |
| FblI | GTMKAC | 1 cut(s) | 189 |
| Fnu4HI | GCNGC | 1 cut(s) | 299 |
| FokI | GGATG | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 1 cut(s) | 299 |
| FspBI | CTAG | 1 cut(s) | 140 |
| FspI | TGCGCA | 1 cut(s) | 297 |
| GlaI | GCGC | 1 cut(s) | 297 |
| GluI | GCNGC | 1 cut(s) | 299 |
| GsuI | CTGGAG | 1 cut(s) | 340 |
| HhaI | GCGC | 1 cut(s) | 298 |
| Hin1II | CATG | 2 cut(s) | 121, 354 |
| Hin6I | GCGC | 1 cut(s) | 296 |
| HinP1I | GCGC | 1 cut(s) | 296 |
| HinfI | GANTC | 1 cut(s) | 26 |
| HphI | GGTGA | 2 cut(s) | 35, 379 |
| Hpy166II | GTNNAC | 1 cut(s) | 190 |
| Hpy188I | TCNGA | 3 cut(s) | 54, 157, 454 |
| Hpy8I | GTNNAC | 1 cut(s) | 190 |
| HpyCH4V | TGCA | 2 cut(s) | 350, 449 |
| HpyF3I | CTNAG | 1 cut(s) | 183 |
| Hsp92II | CATG | 2 cut(s) | 121, 354 |
| HspAI | GCGC | 1 cut(s) | 296 |
| Ksp22I | TGATCA | 1 cut(s) | 34 |
| Kzo9I | GATC | 1 cut(s) | 34 |
| LmnI | GCTCC | 1 cut(s) | 359 |
| LpnPI | CCDG | 4 cut(s) | 240, 343, 370, 426 |
| Lsp1109I | GCAGC | 1 cut(s) | 310 |
| LweI | GCATC | 3 cut(s) | 337, 436, 458 |
| MaeI | CTAG | 1 cut(s) | 140 |
| MaeIII | GTNAC | 3 cut(s) | 110, 200, 248 |
| MalI | GATC | 1 cut(s) | 36 |
| MboI | GATC | 1 cut(s) | 34 |
| MluCI | AATT | 2 cut(s) | 60, 97 |
| MmeI | TCCRAC | 1 cut(s) | 239 |
| MnlI | CCTC | 4 cut(s) | 220, 223, 319, 373 |
| Mph1103I | ATGCAT | 2 cut(s) | 352, 451 |
| MseI | TTAA | 6 cut(s) | 44, 59, 96, 123, 374, 489 |
| MslI | CAYNNNNRTG | 1 cut(s) | 170 |
| MspR9I | CCNGG | 1 cut(s) | 358 |
| Mva1269I | GAATGC | 1 cut(s) | 362 |
| MvaI | CCWGG | 1 cut(s) | 358 |
| NdeII | GATC | 1 cut(s) | 34 |
| NlaIII | CATG | 2 cut(s) | 121, 354 |
| NlaIV | GGNNCC | 1 cut(s) | 396 |
| NmuCI | GTSAC | 3 cut(s) | 110, 200, 248 |
| NsbI | TGCGCA | 1 cut(s) | 297 |
| NsiI | ATGCAT | 2 cut(s) | 352, 451 |
| NspI | RCATGY | 1 cut(s) | 354 |
| PaeI | GCATGC | 1 cut(s) | 354 |
| PctI | GAATGC | 1 cut(s) | 362 |
| PfeI | GAWTC | 1 cut(s) | 26 |
| PkrI | GCNGC | 1 cut(s) | 300 |
| Psp6I | CCWGG | 1 cut(s) | 356 |
| PspGI | CCWGG | 1 cut(s) | 356 |
| PspN4I | GGNNCC | 1 cut(s) | 396 |
| PspPI | GGNCC | 1 cut(s) | 420 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 180, 212 |
| RseI | CAYNNNNRTG | 1 cut(s) | 170 |
| SaqAI | TTAA | 6 cut(s) | 44, 59, 96, 123, 374, 489 |
| SatI | GCNGC | 1 cut(s) | 299 |
| Sau3AI | GATC | 1 cut(s) | 34 |
| Sau96I | GGNCC | 1 cut(s) | 420 |
| ScrFI | CCNGG | 1 cut(s) | 358 |
| SetI | ASST | 7 cut(s) | 59, 133, 189, 195, 234, 259, 330 |
| SfaNI | GCATC | 3 cut(s) | 337, 436, 458 |
| SinI | GGWCC | 1 cut(s) | 420 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 170 |
| SphI | GCATGC | 1 cut(s) | 354 |
| Sse9I | AATT | 2 cut(s) | 60, 97 |
| SspMI | CTAG | 1 cut(s) | 140 |
| StyD4I | CCNGG | 1 cut(s) | 356 |
| StyI | CCWWGG | 1 cut(s) | 463 |
| TaqI | TCGA | 1 cut(s) | 336 |
| TasI | AATT | 2 cut(s) | 60, 97 |
| TfiI | GAWTC | 1 cut(s) | 26 |
| Tru1I | TTAA | 6 cut(s) | 44, 59, 96, 123, 374, 489 |
| Tru9I | TTAA | 6 cut(s) | 44, 59, 96, 123, 374, 489 |
| TseFI | GTSAC | 3 cut(s) | 110, 200, 248 |
| TseI | GCWGC | 1 cut(s) | 298 |
| Tsp45I | GTSAC | 3 cut(s) | 110, 200, 248 |
| TspDTI | ATGAA | 2 cut(s) | 106, 262 |
| VpaK11BI | GGWCC | 1 cut(s) | 420 |
| XceI | RCATGY | 1 cut(s) | 354 |
| XmiI | GTMKAC | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 140 |
| Zsp2I | ATGCAT | 2 cut(s) | 352, 451 |